TCONS_00065561 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065561
Unique NameTCONS_00065561
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1119

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065561 ID=TCONS_00065561|Name=TCONS_00065561|organism=Clytia hemisphaerica|type=transcript|length=1119bp
GTCATGCAGCATTTCATTGAGCATGAAGCTTTCTTATCGCCAAAACAGGT
CAACAAACTAGAACCAGTGCTAAGAAGGCACTGTAATTTCAAAGACATTT
GTATTGGTTCGAAGTTGGGAAGTATAATTAGGACGTATAAAATCCACAAT
AGTGATTTagaagaaattttgaagaatgaaAGAAATCAATACATTGTTTC
ATTTGACCAAGGGAAAGTCTATGTTGCATTGCGCCATGGAGTTGACGATA
GTATTATCTTGCAAAGTAGCATAATGGCAATCCTGTTGGATATTGCTTTA
CGTAGTAGTGATATTAATTCCCAATATCTAAATAGTATCAGGAGCTGTAT
AGATAAAGGAAACCCACACTCAACATTTCAAAGATTAAAACCCTACGTTG
AAGATTTGAATGTCAAACTTGTGAAAGGTTTATCCGCAAACGGTTGGGAT
TTAACAAAATACCATTTAAATGCTGACGAATGGCGATATCAATGGCCTGA
TAAAGCTCTTTAGTCTTGTTTATGGTAGATTATTATTTAAAGTCTTTTAA
AAACGGTGAATGTAAAAgaatatttattattttctgttttctgtttttct
tagtattttaaTTAATGATTAATTTTGAGGTTTTCCTTCGAAAAGTAATT
GGGTTTTGAAGTCGGAAgatattttttagcattttggcaaatattttata
ctttttttagtATTCTCGCCAccaatatataaaattttagcatacagtat
atggcccccaaaacggaggttttcattaaaatgaagattctgacttgtag
atttatcagaattaaacgatttttgtttattttgaaagaatgatgaaatt
gattttgaaaaaataggcatgtttttgctggtttgagacggattcacaat
aacatatttgcgtctaaaggaaatactttaacaccaaaattagataaaaa
ttgcatataactcactctagctccttggatattgaaaataagttatgaaa
acggggtatagggaactttctacacctaatgccgttcagagaatgcaaat
acatctgtgactttagaggctagGTAAAAGATATACCGGGTGctccacaa
aaaagtttctctctttaaa
Run BLAST on NCBI

transcript from alignment at scaffold_440:347796..350687+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065561 ID=TCONS_00065561|Name=TCONS_00065561|organism=Clytia hemisphaerica|type=transcript|length=2892bp|location=Sequence derived from alignment at scaffold_440:347796..350687+ (Clytia hemisphaerica)
GTCATGCAGCATTTCATTGAGCATGAAGCTTTCTTATCGCCAAAACAGGT
CAACAAACTAGAACCAGTGCTAAGAAGTATGCTCTTTTTCACTTGCTTGC
TTGGTGTTCTGTAATCTCATAAAACGGTTTCAAAATGACCAATGACCAAA
CTTACTTTTGCTACAACTTTTATTTACCACAACGGGTTTtctgttttaaa
aatttctttgtttagttttcttgaaataaattGACCACATTACCCAGTAG
TGTATTTCCTATAGAGTAAAGGAATAATGGACTTTTTCAGGCCTGATTGA
ATATGATTTGCTATCACGCATTGTACTCCGCTTATACTATACCTTTTGAG
CCTGTATACTTATCAAAAAAGCCTTTTGCTTTGGGATATCTCTTTAATGA
TCTTACCGAATGACCCGTTAATTCAAGCCCTAAACAGCTTGGGCCAATGA
AATTTAGGAATTAGATATGCATAGTCTTAATTCAAAATTTaggtattact
ttttaaatttgactccttaatctttaaaaaatgtgaaaaactaattttct
tacATTCCTTTTGTTTCTCAGGGCACTGTAATTTCAAAGACATTTGTATT
GGTTCGAAGTTGGGAAGTATAATTAGGACGTTAGTAAAGTAGTTTTGTTT
ATAACAGAGCTGTAAGCTGTTGAGCTGTAAGCCTTAGGTCTATCTTAATT
CAGGAGCTACTGTGTAGTATTACAAGCATCAAGGTTGTAACAAGAATCCC
TTTTTTACTTTCTCTAATCAACAAAGTCAAGTATGATTTTCTATAGAATA
ATCCATTGATCCACTTTTTCGTTCTACCCGCATAGTATTGATTATTTTTA
TGCTATCCTTCTTTACAATATTCCTCCAATCCTACAATTCAGGTATAAAA
TCCACAATAGTGATTTagaagaaattttgaagaatgaaAGAAATCAATAC
ATTGTTTCATTTGACCAAGGTAAGCTTAACACATTGCCAAAATACTATAA
TTTGCATGTGTACTTCAAATATGAAAACAAAGTAGCCTAATAATATCATA
AGCATCTTATAGGCACATATTCTATTTTAATTAACACACTCACTGCATAG
GTGATATGACTTACTCTCCCTACATTTAAGTTTCTAAAGTTTATTAGATC
CTGGACCACTGTACCTTTCTATTGCCTTTCGGTGTTGAAGAGAAATTATC
TCTTTTTCTTGCAAATACCCTATTTGTAACTTTGGCACACTTTTAGATTA
TGTTCCCTTCAGGGAATTCGAATATAATTCTTTTGTATCTTAGGGAAAGT
CTATGTTGCATTGCGCCATGGAGTTGACGATAGTATTATCTTGCAAAGTA
GCATAATGGCAATCCTGTTGGATATTGCTTTACGTAGTAGTGATATTGTA
AGAAATCATACTTCTCAAATTGTAATTCATACTGTATTTCGTACGTTTAT
CTGACAGGTGACGGCTCATAGCATATACAAAGTACCAATAAAAGCTTGGC
ATTTAAGCTTTCAAGAGATTGGTTTTCGAGCATCTGTCACACTCCTAATG
ATCATTCTAAGGAAAAAAGAccgcttattaattttgaaaaaatttcaatc
gTCACAAGCTGAactgctctaaatagcctggtttTAGCTTATAATTACTT
TTTTTTCGGTAATTGCAGCTGTAATAGTTAAACCATTTTCTTTTAGAATT
CCCAATATCTAAATAGTATCAGGAGCTGTATAGGTAaggattttcatttt
tgcaAGTTCGGCCTCTAAGAGTTCCTAAGGAGCTTGTGCTCGAGTTTTTC
AGGGCTGAATGATAACTAGCAATATGTTTAGCAATATGTTACAGTcattt
taatgatatttttttcaatcattgaTCCCCTTTCTTACAGCTTTTGACGC
AAGAGCTAATTAGGTGTATTAAAGGACCaggaaatgagaaaattttatat
ttcttCATGATCAAAACCCTGATATGGTGATTACCCGTGATGCACTCTTC
TGTTAGTAGAGCACGGAGGTGCGTCGCTTTTTTCGCACTTACTTTTACCC
CAAAATACTATCTTTAAAATCAAGGAATTGCGTATTATGAAATGGTATTG
TTGATATGCTGATTTTCAATTGCAGATAAAGGAAACCCACACTCAACATT
TCAAAGATTAAAACCCTACGTTGAAGATTTGAATGTCAAACTTGTGAAAG
GTTTATCCGCAAACGGTTGGGATTTAACAAAATACCATTTAAATGCTGAC
GAATGGCGATATCAATGGCCTGATAAAGCTCTTTAGTCTTGTTTATGGTA
GATTATTATTTAAAGTCTTTTAAAAACGGTGAATGTAAAAgaatatttat
tattttctgttttctgtttttcttagtattttaaTTAATGATTAATTTTG
AGGTTTTCCTTCGAAAAGTAATTGGGTTTTGAAGTCGGAAgatatttttt
agcattttggcaaatattttatactttttttagtATTCTCGCCAccaata
tataaaattttagcatacagtatatggcccccaaaacggaggttttcatt
aaaatgaagattctgacttgtagatttatcagaattaaacgatttttgtt
tattttgaaagaatgatgaaattgattttgaaaaaataggcatgtttttg
ctggtttgagacggattcacaataacatatttgcgtctaaaggaaatact
ttaacaccaaaattagataaaaattgcatataactcactctagctccttg
gatattgaaaataagttatgaaaacggggtatagggaactttctacacct
aatgccgttcagagaatgcaaatacatctgtgactttagaggctagGTAA
AAGATATACCGGGTGctccacaaaaaagtttctctctttaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041087XLOC_041087Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065561-exon-scaffold_440-1491911889:347796..347871TCONS_00065561-exon-scaffold_440-1491911889:347796..347871Clytia hemisphaericaexon
TCONS_00065561-exon-scaffold_440-1510915933:347796..347871TCONS_00065561-exon-scaffold_440-1510915933:347796..347871Clytia hemisphaericaexon
TCONS_00065561-exon-scaffold_440-1575043694:347796..347871TCONS_00065561-exon-scaffold_440-1575043694:347796..347871Clytia hemisphaericaexon
TCONS_00065561-exon-scaffold_440-1491911889:348367..348424TCONS_00065561-exon-scaffold_440-1491911889:348367..348424Clytia hemisphaericaexon
TCONS_00065561-exon-scaffold_440-1510915933:348367..348424TCONS_00065561-exon-scaffold_440-1510915933:348367..348424Clytia hemisphaericaexon
TCONS_00065561-exon-scaffold_440-1575043694:348367..348424TCONS_00065561-exon-scaffold_440-1575043694:348367..348424Clytia hemisphaericaexon
TCONS_00065561-exon-scaffold_440-1491911889:348688..348764TCONS_00065561-exon-scaffold_440-1491911889:348688..348764Clytia hemisphaericaexon
TCONS_00065561-exon-scaffold_440-1510915933:348688..348764TCONS_00065561-exon-scaffold_440-1510915933:348688..348764Clytia hemisphaericaexon
TCONS_00065561-exon-scaffold_440-1575043694:348688..348764TCONS_00065561-exon-scaffold_440-1575043694:348688..348764Clytia hemisphaericaexon
TCONS_00065561-exon-scaffold_440-1491911889:349089..349192TCONS_00065561-exon-scaffold_440-1491911889:349089..349192Clytia hemisphaericaexon
TCONS_00065561-exon-scaffold_440-1510915933:349089..349192TCONS_00065561-exon-scaffold_440-1510915933:349089..349192Clytia hemisphaericaexon
TCONS_00065561-exon-scaffold_440-1575043694:349089..349192TCONS_00065561-exon-scaffold_440-1575043694:349089..349192Clytia hemisphaericaexon
TCONS_00065561-exon-scaffold_440-1491911889:349492..349528TCONS_00065561-exon-scaffold_440-1491911889:349492..349528Clytia hemisphaericaexon
TCONS_00065561-exon-scaffold_440-1510915933:349492..349528TCONS_00065561-exon-scaffold_440-1510915933:349492..349528Clytia hemisphaericaexon
TCONS_00065561-exon-scaffold_440-1575043694:349492..349528TCONS_00065561-exon-scaffold_440-1575043694:349492..349528Clytia hemisphaericaexon
TCONS_00065561-exon-scaffold_440-1491911889:349921..350687TCONS_00065561-exon-scaffold_440-1491911889:349921..350687Clytia hemisphaericaexon
TCONS_00065561-exon-scaffold_440-1510915933:349921..350687TCONS_00065561-exon-scaffold_440-1510915933:349921..350687Clytia hemisphaericaexon
TCONS_00065561-exon-scaffold_440-1575043694:349921..350687TCONS_00065561-exon-scaffold_440-1575043694:349921..350687Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_440supercontigscaffold_440:347796..350687 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.389273	0.317859	0.790528	0.299119	0.404295	0.215443	0	0	0	0	0.106076	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065561 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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