TCONS_00065405 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065405
Unique NameTCONS_00065405
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1231

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065405 ID=TCONS_00065405|Name=TCONS_00065405|organism=Clytia hemisphaerica|type=transcript|length=1231bp
ATGGTTTCTACGCACAGATcaatatcaagtaaacaatTGCAATTATTTCA
ATTTGAGTTGATAGAAACAATGTAGAATGTAATCATTTTATGGTTGAGTA
CGTTTACTGTTTTAAACACTAAAAAACACATTTTCAgcatgaaaattaat
ttttgaatgttcaatcatgcattgaaaaatattagttttggacttaataa
ttttttatcgtgcaatattttttttaacggAATATTGCTGCAGGGAGTTC
ATTTTTTTGGAAGTGAAAGatgaattttctgaaaatcgcCTTCGTGGCGC
TACTTATTGTAGCCCTGTGTTCGGCCAAAAAGCACAAGAAAAGACATGGT
TTGAAATCATTAGCTAAGAAATCCAAGAAAGCGCCACAGGCGGCTCCACA
AGAGCTACCACCCCCACCTCCACCACCTCCACCACCACCACCAGcCAAGG
CTGAaagtgatgatgatgatgaggaaGAAGATGGTTCCGCTGATGCTGAG
CCAGCACCAATCGTTGCCCCAAAGAAACAATCcaaaaagcaagaaaagaa
agtgaaaggaGGTAAGAAGAAATTGAGCGTCCGCTCCATCGTTAAGCGGG
CCGCTGAAGAAGCCGAAGAAGGAAGTGCTGAGCGAAAATCTGAAGTCGAA
GGATCTGCTGAACGCAAATCTACCGTGACCGAAGAGGAAGCCACCAAAAA
GAAATCTGAAGAAGGAGGcgatgatgaagatgaagatgacgAGGATGATG
ATGAATCCTCGGCTGCCCCACCACCAGTGGTcgcaccaccaccaccacca
ccgccACCATGTGACCCATCTGTTGATCCTAACTGCCCATacccaccacc
accaccacctccCGCAGGTCCACCATACCCACCACCACCAGGCCCACCAG
CACCACCACCGCCACCACCAGATGTGCCACCACCAGGCCCACCAGCTCCA
CAACCAGAACCAGCCCCAGTCCCAGAACCAGCACCACTTCCACCAccaga
gaaaaagaagaagggaAAGAAGACCTCCAACAAAAAGAAAGCCAAGAAAT
CCAAGAAAAGCAAAAAGCATAATTAAATTTCACTCGTCATATTTAGCTTC
ATATAAACTTTGACATTCAATCCTTTACATAAATATGCACTGTATACccg
atatatttttttgaaaagaataaaattatttattatccaaatttttacaa
ctcaaaatatatttatttaaaTTAACCAAAG
Run BLAST on NCBI

transcript from alignment at scaffold_439:202175..208749-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065405 ID=TCONS_00065405|Name=TCONS_00065405|organism=Clytia hemisphaerica|type=transcript|length=6575bp|location=Sequence derived from alignment at scaffold_439:202175..208749- (Clytia hemisphaerica)
ATGGTTTCTACGCACAGATCAATATCAAGTAAACAATTGCAATTATTTCA
ATTTGAGTTGATAGAAACAATGTAGAATGTAATCATTTTATGGTTGAGTA
CGTTTACTGTTTTAAACACTAAAAAACACATTTTCAGCATGAAAATTAAT
TTTTGAATGTTCAATCATGCATTGAAAAATATTAGTTTTGGACTTAATAA
TTTTTTATCGTGCAATATTTTTTTTAACGGAATATTGCTGCAGGGAGTTC
ATTTTTTTGGAAGTGAAAGATGAATTTTCTGAAAATCGCCTTCGTGGCGC
TACTTATTGTAGCCCTGTGTTCGGGTATGATATTATTTATTTTATTCTTC
CATTACATTAATGAGAAACAGAGTATTTCTTTATCAATATTTATAGTTTC
ATGCTCTTCACAATCATTAGTTGATTTGAAATTATTTATTTTATTCTTCC
ATGTCTTAACGAATTAACTTTAGAGATTTTTTTATTGGGAAATATTTTTG
TCAATTTTTGCTCGTGTTTTGTCTCGTTATTTTGTGTGGTTCCTAGCGTG
AGAACCTGATACGACTATTTGAATTTTTTATTTTGTTTCCACTTTTGGTT
TTATTATTCGCTCTGTGAAATTGAAGTTAAAAAGTATTCTCATTCAATTA
TTATATTTTCCTGATATATATGATTTTTTTAATGGTACCATTAATAATTT
TTATCTCAGCCAAAAAGCACAAGAAAAGACATGGTTTGAAATCATTAGCT
AAGGTAATTAACTAGATTTTTCTTAATTTGATAGTATACATACACTTTTT
TTTATAAGAACATCCAAAATTTTTGAAGCCTTGGAATGTTCTTAGCTTTT
TGGATTTTAAGCCTAAAAATCTTCTTAACATGTTCTTATTTTCGCTATTT
TTTGAGAATTTTTGTCCATTTTCCTAAGAAATCGGGTGTTTTAGAGTTCT
CAAAGCCTTAAAATGTTCTTAACTTGTTCATAATATTTTTGGCCATCAAA
GCCTCATCTTCTTATATAGTTTGTTCTTATAAAAAAACGTGTATACTACT
TTTGATTGAAAGCTTTGGCATCTCGCTCTTTTGATTTTTACACTGCACGT
TTTTTTACAAGAACAAACTATATAAGAATGTAAGGCTTCGGTTAGCAAAA
TTTTATTAAGAACAAGTTACAAGAACATTAAGGTTATCGTAAATGAAATT
ATTTTAAAGAGGTTTCACTAAATAAATATCACCGAATTCCGCTCATAATT
TGCTTCTTGTATTTTGACAGAAATCCAAGAAAGCGCCACAGGCGGCTCCA
CAAGAGCTACCACCCCCACCTCCACCACCTCCACCACCACCACCAGGCGC
ACCACCACCACCAGGCGCACCACCACGTAATATGATTCTTCTCATCTAAT
TCTTTCTTTACGACTAATATTATAGAAAAATAAGCAAGTGGTTAATGATG
GGATAGTTCATTCATAAAGCAACCGTCATCATTCAATCATATAAATGTCT
CTCTGTTTTGCTCTTACTCAAGGCTTGTTACGCTGATGTTATGCTATGTA
ATAAGGAGAGTGGCCTAATGCAAGCCCGGGGGGGGGGGGTACTTAGGCAA
ATATGGATGATGGGTATGTGCGGACGGTAAGGGTCGTTTTTTTCACCTTT
CTCAAAGTCTCTCTAAGGGTCGGAAAAATCAGAAAGTTTTAAATTAGTCT
CTCTAAGGGTCGGAAAATTCAGGATTTTTGGGAAATTTTTTGATTTCCAG
AGAAAAAATTGTAATAAAGTCTCTCTAAGGTTATGACTTTTTTCAAAAAT
CGAAAAAAAATTTTTAATAAAGTCTCTCTAATGTTATGACTTTTTTCAAA
AATCGAAAAAAAATGGTAATAAAGTCTCTCTAAGGGTATGGCTTTTTTCA
AAAATCGAAAAAAAATGGTAATAAAGTCTCTCTAAGGGTATGACTTTTTT
CAAAAATCGAAAAAGAAATTTCAAAAAGGCTCTCTAAGGGTCACCTTTTT
AGCAAACAATCAGTCTCTCTAAGGGTCGGTTTTCGGAGGTCCCGTCCGCA
CATACCCCTCATTCGCCAACCCTAGTACCCCCCGGGAATGCAAGTGACAA
AAATTCAGAGGAGTCCAGTCCAGTCTTTATCAATCAAAAAAAGGATTAAG
CCTGGGTACAAGGTTGTATAGCATAATATTTTATTATTTTTTTCTTGATT
TAATTCAGCTCTTCCACCTTGCGATCCAAACAAACCTGATACAGTAGTAG
GAAATAGGCCCGGTGTCGACTGTGGTAAGTTCAAAATTAATATTTAATAC
CCTTCATTATGCTGTTGCTAGTTTTTGGGCAAATTTTTCTTTTTTCTTCA
AAACATTTTTCACCTAGAATCTTTTGTTCTTTCTGTTCGAATTTACTTTA
CAGAAATTTTAGAAAAATACTGCACCACCGTCTCAGTGGCTCTATGAGCT
TTTTTAGCCGTTGGAGTGGAACGTATGTGAGGTGGAGAAGGCCTGTTTAA
TGGGTGTGGGATTTAAAATTATTATGTTTTTTTTGTGCCTTAAAAATGGG
GTTAGAAGTGAAGGGTGATGAGGGTCATTTTTCCAATTTTGATAATAGAC
AGGGATTATTACTGCAGAGGAGTGGAAATTATACTTCTAAATAACCTACC
TACCTATTATTAAGTATATACCAAATAAATACTATATAAAAAAATAGCTG
AAAGAATTTATTAATCATTAAACGACAGTCCTAATTTAAAGGTACTTTTC
ATAATAAAAACTATACAAAAGATTAAATAGCTCAGAACAACCCTTGCATT
AATATTGATAAACTCACTGTCGAACTAGTCTTAGAAAATCCGTAAAACTT
GACAGGGACTCGGTGTCATAAAAGTTTTGACTCTAATACATAAAGAATTT
TTGGTTTTGAAGAGCATTTCGAAGGAGTATTTAAAGTAAAGGGGCGTTTA
TAGTTTTAAACCAGCTTACTTTACTAAAGTGAATGAGAACCATATTTTAC
TTCTTCTTTATTCTTCTTCACTCATTTACATTTGAGGGGATAAAATTATT
ATCTCAGTCATCTATGAAATTTGAAATTTGAGGGGCCTTTATTCAAAGTG
ATAGGATGAATAAAATAAAAAATGAAACAATTCTCTCTTTTTTTTTAGTT
TTAAGTTTGACACTCATGAAAGCTAAATTTCGATAATAATTTGTAAATTT
TATTTTTGTAGAATTACCACCAGACGCACCACCACCTCCAGGACCACTAC
CACCACCACTAGACGCACCACCACCACCACCACTAGACGCACCACCACCA
CCACCACTAGAGCCAGCACCACCACCTCCACCACCTCCACCACCACCACC
AGCCAAGGCTGAAAGTGATGATGATGATGAGGAAGAAGATGGTTCCGCTG
ATGCTGAGCCAGGTATGACGTCAATTTATTTTTCCACTTTAAGAGAGTGG
TCAGAAAGTATCTACCTTAGGGTATAAATTATTTCGCGAGGGAAGATGTC
TCGCGAAAATTAGTTGCCGCGAAAAATAATTCCCTTAAGGTACTTGGGGT
GTCAAAATTTTTCCAAAAAATTCCATGTCTTTAGGTACATGCCTATATTA
GTAGGGGGTGCCCAAAATATATTGAAATTTGTTGAGGATATCAAGGGATG
ATGGAAATGTTTTTTGAATTTTTGAAAATATCCTCCACCCCACCCCAATA
GATACTTTCTGACCACCCCCTAATAATACAGTGTGTCCGGAAAAGATTAG
ACAGATTTTATATACATTCAGGCCCAATTCATCAAATGTCTCTTTGTTGG
TTTTATATAGTTTACCACCATCCGTAATTGAGCTTTCAAAAGATTTTCAA
AATCACTCGGACATTTATATGGTAGAATATACAGAGTCGGCTCCTCTTTT
GAAATGTCCATCATTAAATAAAATTCAATACTTATTAACTACACTTTGAC
AATTTTGAATTCAACTGGAAATTACATTGATATTGATATTTTCCATTATA
TAGAACCTGCTATATTTTTTCCGAACACATTTTACGTTTTGATAAATAGA
TTTGAAACTGTGAGGAGGCTGACATACTGGGTAGTAAACTGACTGTAGAA
TGAAAAATCTTGGATAAAATCTTAACTTAAAACTAGGGGAATAAGATTTT
TAAAAGTCCTATAATTTCATATAATAGAACTGCAAGCATAGTAGTCGTTT
ATCCGCTGTAATTTGAATAGCATTTGACAGTCGTTGGAAATTGTATTTTA
TTCGATATTCAAGTCCTTTTTGAGTCTTCAATAGTCGACCTATTATCCTG
GATACACGCTTTTTTTATACAAGAATACACTTTATAAGAATGTCCATGAT
GAAAACGGCCAAAGAATTAAGAATATAGTAAGAATATCACCATCATGGAA
TTTAGCAACTGAACCTAAGAATGCCATTTTTAATGCATTTTAACCTACAG
ATTGCCAATTTCGATCTTAACCTGAGAATACCGTAAGAATATTTTTGGAT
GATTTTCGCCAAAAAGTTAAGAATATCCATGATGAAATGAAAAAACACCA
TTCTTATAAAAAAAAGCGTGTAGTTGATTTGAGTTTACAACGACTACACG
AAGTTTGTTTAGAACCCAGTCTCCTCACAGAGTAACTACATTTGTCTGCT
TGATGACACCAAGTCCCTGTAAAATACAGTGTTCAAATGAAAAAAAATAT
TACAGTTAATTTCACGGAGAGCGGCATTCAGTCAATATAAAGTCTTTTAA
AAGGCGGTGCTTATACACTACAAAATTTCGATACTTGGTAAAATTCAATT
CCTTAACCACGCAACTTAAAACATCCAAACCATTCATACATTACATTATA
TAATTAAAAAAAAAAACTTTCATGCTTTCATGCTTACACGTAAAATTTCG
TGCACTATTGATACTTGTAATTTTTTGAAATCATGTCTTCTCTTAACACA
CTTAACACAAAATAGTCGGTGAACTTTTCCAGTATAAAACTTTTATGATG
AAAAACTTTCACCCTAAAATTTGACGGATTTCATTATTCCACGAAAAAGA
ACAAGCCATCCATACAAAAAACAATCTCATCCAAAAACATAAATACACAG
GCAAAAATGAAAAAACCAAAACTTATTTTTCCTTTTTTTCTCTCTGCCTT
AGAAATACCCGCCACTCAGCCTAAAAATGTCAAGTCAAAATCAGAGTCAA
AATCCGTCAAAGCGAAAGGGCAGAAACGTAACCGGACTGTTCTCAATCAT
TCAGTCACGTCGATAAGTCAAACCAAAAATGCACCACAGCACGCAAAATC
GGTTCACACTACAACATCGCATGTTAAGAATCATTTGTAACAGTATCACA
ATATATTTTTGATGTTTTGGATAGCGTTTAATAAAAAATAAATGAACATG
TACTGTTCTACGAGCAAATGAAATAAATAAGATCTTAAACAAAAAACATC
GTCTCATTTATTGTCTTCATAAACACAACCAAATCCACTAGAGTACAATA
TTCAAAATACACAAGTGTTTCCTACTTCAGATGCTTGATGCCTTTTGGTC
TAAAACTAGGATAAAGGGTCTATTAAGAATACTAAATTCCGTGATCAATT
TGAGAGAGCTTTTCTTTGCTCTTCTCTTTACTAGAAGACGTGGTACAAGT
ATCAAAGAAGCCCAAGAAAAATTCCAAAAAGCAAAAAGCAGGATCGCATC
GGTCAACCGTCGTTACTAGTACAACAAACACAATACAACAACCCAAAAAT
TCTCATGTCAAAGCTAAATCCACTACTAAATTTGATAACAAAATCACAAA
GTCGAATTGATTTGATTTAGTGACTTTTTTTCTTTCTTGTAAAAACAGCA
CCAATCGTTGCCCCAAAGAAACAATCCAAAAAGCAAGAAAAGAAAGTGAA
AGGAGGTAAGAAGAAATTGAGCGTCCGCTCCATCGTTAAGCGGGCCGCTG
AAGAAGCCGAAGAAGGAAGTGCTGAGCGAAAATCTGAAGTCGAAGGATCT
GCTGAACGCAAATCTACCGTGACCGAAGAGGAAGCCACCAAAAAGAAATC
TGAAGAAGGAGGCGATGATGAAGATGAAGATGACGAGGATGATGATGAAT
CCTCGGCTGCCCCACCACCAGTGGTCGCACCACCACCACCACCACCGCCA
CCATGTGACCCATCTGTTGATCCTAACTGCCCATACCCACCACCACCACC
ACCTCCCGCAGGTCCACCATACCCACCACCACCAGGCCCACCAGCACCAC
CACCGCCACCACCAGATGTGCCACCACCAGGCCCACCAGCTCCACAACCA
GAACCAGCCCCAGTCCCAGAACCAGCACCACTTCCACCACCAGAGAAAAA
GAAGAAGGGAAAGAAGACCTCCAACAAAAAGAAAGCCAAGAAATCCAAGA
AAAGCAAAAAGCATAATTAAATTTCACTCGTCATATTTAGCTTCATATAA
ACTTTGACATTCAATCCTTTACATAAATATGCACTGTATACCCGATATAT
TTTTTTGAAAAGAATAAAATTATTTATTATCCAAATTTTTACAACTCAAA
ATATATTTATTTAAATTAACCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040994XLOC_040994Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065405-exon-scaffold_439-1575043694:208426..208749TCONS_00065405-exon-scaffold_439-1575043694:208426..208749Clytia hemisphaericaexon
TCONS_00065405-exon-scaffold_439-1575043694:207997..208040TCONS_00065405-exon-scaffold_439-1575043694:207997..208040Clytia hemisphaericaexon
TCONS_00065405-exon-scaffold_439-1575043694:207404..207479TCONS_00065405-exon-scaffold_439-1575043694:207404..207479Clytia hemisphaericaexon
TCONS_00065405-exon-scaffold_439-1575043694:205338..205397TCONS_00065405-exon-scaffold_439-1575043694:205338..205397Clytia hemisphaericaexon
TCONS_00065405-exon-scaffold_439-1575043694:202175..202901TCONS_00065405-exon-scaffold_439-1575043694:202175..202901Clytia hemisphaericaexon
TCONS_00065405-exon-scaffold_439-1510915933:208426..208749TCONS_00065405-exon-scaffold_439-1510915933:208426..208749Clytia hemisphaericaexon
TCONS_00065405-exon-scaffold_439-1510915933:207997..208040TCONS_00065405-exon-scaffold_439-1510915933:207997..208040Clytia hemisphaericaexon
TCONS_00065405-exon-scaffold_439-1510915933:207404..207479TCONS_00065405-exon-scaffold_439-1510915933:207404..207479Clytia hemisphaericaexon
TCONS_00065405-exon-scaffold_439-1510915933:205338..205397TCONS_00065405-exon-scaffold_439-1510915933:205338..205397Clytia hemisphaericaexon
TCONS_00065405-exon-scaffold_439-1510915933:202175..202901TCONS_00065405-exon-scaffold_439-1510915933:202175..202901Clytia hemisphaericaexon
TCONS_00065405-exon-scaffold_439-1491911889:208426..208749TCONS_00065405-exon-scaffold_439-1491911889:208426..208749Clytia hemisphaericaexon
TCONS_00065405-exon-scaffold_439-1491911889:207997..208040TCONS_00065405-exon-scaffold_439-1491911889:207997..208040Clytia hemisphaericaexon
TCONS_00065405-exon-scaffold_439-1491911889:207404..207479TCONS_00065405-exon-scaffold_439-1491911889:207404..207479Clytia hemisphaericaexon
TCONS_00065405-exon-scaffold_439-1491911889:205338..205397TCONS_00065405-exon-scaffold_439-1491911889:205338..205397Clytia hemisphaericaexon
TCONS_00065405-exon-scaffold_439-1491911889:202175..202901TCONS_00065405-exon-scaffold_439-1491911889:202175..202901Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_439supercontigscaffold_439:202175..208749 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.44206	3.1213	1.26198	2.56926	6.28031	6.31271	235.603	272.119	73.6714	96.2016	164.061	86.984	197.331	210.361	165.443	542.868	215.124	216.956	2.31605	1.46091	105.124	120.599	109.875	88.8216	197.258	222.728	23.921	9.16133	2.88791	2.93561
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065405 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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