TCONS_00065453 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065453
Unique NameTCONS_00065453
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length386

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065453 ID=TCONS_00065453|Name=TCONS_00065453|organism=Clytia hemisphaerica|type=transcript|length=386bp
CTTGTCGGCAAGTAGCCTGCTTTGTTTTTTTCGGCAAATTTCCGGATGAC
ATACGGGGATAAGTGCTGGCAAAAGAtgtaatcaaattttctttgttgtc
GGCAAAGTGCTGGCTATTTTTCATTGTTGTCGGCATATTACTGAATAGTT
TTTTCATTGCCGGCAAACTGCCAGCTATTTTCCATAGTTACCGGCAGATT
GCTCGCAAAAATATCCCTTTAAACCAAattcttttctaaaaataggatTT
AAACAAATGTTGCAAGCAAACTGTCTAACAGCTTATTGCTGGCTGTAATT
AATGGATTGTCGGACTCAAAAAGAGTGTCACCGGCaagataactttttat
ttttaatgcctttttcatctactttttaaattgttg
Run BLAST on NCBI

transcript from alignment at scaffold_439:22870..23255

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065453 ID=TCONS_00065453|Name=TCONS_00065453|organism=Clytia hemisphaerica|type=transcript|length=386bp|location=Sequence derived from alignment at scaffold_439:22870..23255 (Clytia hemisphaerica)
caacaatttaaaaagtagatgaaaaaggcattaaaaataaaaagttatct
tGCCGGTGACACTCTTTTTGAGTCCGACAATCCATTAATTACAGCCAGCA
ATAAGCTGTTAGACAGTTTGCTTGCAACATTTGTTTAAatcctattttta
gaaaagaatTTGGTTTAAAGGGATATTTTTGCGAGCAATCTGCCGGTAAC
TATGGAAAATAGCTGGCAGTTTGCCGGCAATGAAAAAACTATTCAGTAAT
ATGCCGACAACAATGAAAAATAGCCAGCACTTTGCCgacaacaaagaaaa
tttgattacaTCTTTTGCCAGCACTTATCCCCGTATGTCATCCGGAAATT
TGCCGAAAAAAACAAAGCAGGCTACTTGCCGACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041015XLOC_041015Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065453-exon-scaffold_439-1491911889:22870..23255TCONS_00065453-exon-scaffold_439-1491911889:22870..23255Clytia hemisphaericaexon
TCONS_00065453-exon-scaffold_439-1510915933:22870..23255TCONS_00065453-exon-scaffold_439-1510915933:22870..23255Clytia hemisphaericaexon
TCONS_00065453-exon-scaffold_439-1575043694:22870..23255TCONS_00065453-exon-scaffold_439-1575043694:22870..23255Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_439supercontigscaffold_439:22870..23255 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.50917	1.48512	3.47437	4.35029	1.08121	0.213597	1.54618	1.02486	1.1098	1.04609	0.609215	1.4092	0.266612	0.789566	0.227632	0	0.300938	0.308452	0.213071	0	0.387592	0	0	0.208939	0.215203	0.57619	0	0.293319	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065453 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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