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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065262 ID=TCONS_00065262|Name=TCONS_00065262|organism=Clytia hemisphaerica|type=transcript|length=2981bp
TCAAAATGTCATATCTTTGAAACCATAAAGTCAATACTAACGAAACTTTA
CAAACACATCCATATATAGTGAGAAATCATCTATAGAAAATCTTAAGAAG
TTTTACTGACCAagtggtattttacagaccagaaagctccaacttttgca
tatttttacgatttttctACGGAAACGCCTCCAAACTTGGCTAATGCTAA
TAATACCATTGTCTTCTTTCATTTACAGAAAGGATAATAATTGGAGTGCA
AAGGACTTCATTGTAGGTTTACTGAATAGCAATACAACTGTCAAAATCAC
TGGTTATAGCTTAAAATTACAGTATCTCGTTTGCTTAAATTAAAGCCTTA
TTGTATCGTTTCAGTgaataaaaatgagtaaaagaaagaaaaatgagttA
GAACTTGTGTGTATTTGCCACTACCCTGGTAACTCAAGTTATTCGAAAGA
AGTCAAAGAATTAACTGAAAACAACATAAGCCGGTTGATTCAAGCAAAGG
AAAAACGGAAAGAGTTGGGTGGTGATCATCTCCATGAGGAACAAATCAAG
CAGATTCCAGAAACTTTCGATTTGAAAAAGCACGGTGTTCATTCAAGGCC
ATGTTACAACTTGTTTACAAATGTTATCGGAGACAAACGCTATTCAACAG
AGGATGCAGACGAACCGTCGAGACGTAAGTCAGCCAGATTATCGAGTCCA
CCACCACCAACAGAATCTCGGATAGTTTATCCAAATGTCTGCCAGCTGTG
CGAAAAGTATAAAATgcaacataaaaacaaaacccaTTACCCGCATAAAA
TATTGACATACAACACTGCTGATGCAATTAAGGCATCTGCGAAGAATAAG
GATAAACGGTTGTATTGTGACATTGCATTTGTGGATATTGTTGCCAAAGA
ATTCCATGTGCATGACCCATGCTATAAAAGCTTTACTCTTGAATACTACC
GTGGAATCAACGAAAGCTCGAAAGCTTGCAGCAGTAGAACCACAGCTCAA
CAACAAGAAACACAACCGAGCTACTCGAAATCAAATTACGAAGAGGTAAA
ACAATACGTCAATGATTCCATCATTAAGGAAAAGAAACCcgcttcaatca
aacttttaCACGACATCTACGGAATAGGAATTGGTTGCACAAGCTACAGA
CAAAAACTTAAAGAACGCTTAAAAAGTGATTTCGGTGATAAGATATCATT
CCTTAGTCAAGAAAATAAGACATTGCCAGAAATCGTGATATCCAATGAAT
ACTTCACTGCCGACAAAGTTTTATACTCTGAAGAGCAGACGGTAAAGTAT
GCTGCAAAGATTTATGGGTGATAGAATTCAATCAAACAAAACACCGTTCC
ATGAACCTTTGACcaaacaaaaaccaaccttgttcaagcaacaacaaatt
aagaagaagaaTAAAGACCATGCAAAGGAAGTGATCAAAGTCAATCGGGA
TATCCTCGGAAAACTTTTGTCTATCTCAACGAAACTGCAGAGCCCAATCG
ATTTCAAAACCGTTTTATCCTATCCATTATGTCCAGTTCCACTTAGTTTG
GCATTTCCAGACGGAACAAAACGAGGCAACAAGAAAAGCCAGCTGATTGA
AATCATACTTCCTTCCGTTATTCCATCTTCTGGTGATCGCACCTGCAACA
CATTGATAGTTGATCTAATCGCTCATTACCGAATCACATCAAAGGGAAAG
GCAAAAACTTTCGCACAATTCATCACACGACTTCTTTCATCATTACCGAA
AGGCCACCGTCGAGTTGATCTGGTCGCAGACTGTTATCGCAAATTCAGCA
TCAAAGCAGGTGAAAGAGTCAAACGTGGAGCTTCCGATTCAGAAAAAGTC
TTAATCAGATCTGTCGATACATTGGTACCTAGTGATCTTAACCGTTTCTA
TTCCAATTCCGAAAACAAAACGCAACTGATTCAGCTGACATTCGACTTCA
TCAAAGCAAATCCCAAAAAGTGCCTCGACATCCTTAAATGTGACAGCATA
GTCATGTCTGGTGACCAATATTGTGAGAAGGTAACTCGTGACAATGTGTC
GAATGTGGAAAGTCTCGTTTCAGATCAAGAAGAAGCTGATACCAAACTTA
TTTTACATACTTTGGACGCCCTCAACAGTGACGGCAATGTATGTATTCGT
TCTTCATCGGGAGATACCGACGTTTTGGTCATTGCTATTGGTTTGCTTGG
TGGAAATTCCCGTGTTCTCGTTGACACAGGAAATGGCGACAGTAGGAAGA
AAGTCTGGCTTGATTCAATTTCGTTGACAAGTGAGCAGCAGAATGCACTT
ATTGGTTTCCATGCATTCACCGGAAACGACTATGTATCCTGCTTCTTTCG
AAAGAGTAAACAGATATGTTGGGGCAAAATGAATGACCAAGATAAGGATG
ATTGGACAGCCCTTTTTGGAAATCTTGGAGATTCGTGGGAGATTTCAGAG
GATCAAATATCGAACTTCGAAAAGTACATCTGTCACCTATACTCATCAAA
AAAGTCAAACATAAACGATGCAAGGtttcagattttcgaaaaaaagcatt
tgaaatcaaaacaagtagCTGACCTTTCCCTCCTTCCACCCTGCCGTAGA
ACTTCGTACAACACCTGAAAAGAGCAAATTACGTAGCAAAAATTTGGAAG
TCAGCTGGGACAGCTATGGTGGAACTACCCCCTCCCTCGCAGCACGGATG
GACTGATGATGGAGAGATCTTTTGGACGGACGGAATGTTTCCCGACAGCT
TGAATAACTTTGTCATTTCTGATGAAGATGAGGACGATGACGAGGATTTC
GAGGACGATATCGAAGGCGATGTTTTCGATGAATCAGACGAAGAAGATGA
TTTAAGTGATGACGAGGACAGTGTTGAAGAATGATCATTTACatagaatt
ttgaaatatttcgtaGTTTTTTTACAGTATAAATGTAaaactttaaagat
aaaattttcaatcaaaacggCTAGGGTTTGT Run BLAST on NCBI protein sequence of TCONS_00065262-protein >TCONS_00065262-protein ID=TCONS_00065262-protein|Name=TCONS_00065262-protein|organism=Clytia hemisphaerica|type=polypeptide|length=439bp
MLQRFMGDRIQSNKTPFHEPLTKQKPTLFKQQQIKKKNKDHAKEVIKVNR
DILGKLLSISTKLQSPIDFKTVLSYPLCPVPLSLAFPDGTKRGNKKSQLI
EIILPSVIPSSGDRTCNTLIVDLIAHYRITSKGKAKTFAQFITRLLSSLP
KGHRRVDLVADCYRKFSIKAGERVKRGASDSEKVLIRSVDTLVPSDLNRF
YSNSENKTQLIQLTFDFIKANPKKCLDILKCDSIVMSGDQYCEKVTRDNV
SNVESLVSDQEEADTKLILHTLDALNSDGNVCIRSSSGDTDVLVIAIGLL
GGNSRVLVDTGNGDSRKKVWLDSISLTSEQQNALIGFHAFTGNDYVSCFF
RKSKQICWGKMNDQDKDDWTALFGNLGDSWEISEDQISNFEKYICHLYSS
KKSNINDARFQIFEKKHLKSKQVADLSLLPPCRRTSYNT Run BLAST on NCBI transcript from alignment at scaffold_435:235640..238791+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065262 ID=TCONS_00065262|Name=TCONS_00065262|organism=Clytia hemisphaerica|type=transcript|length=3152bp|location=Sequence derived from alignment at scaffold_435:235640..238791+ (Clytia hemisphaerica)
TCAAAATGTCATATCTTTGAAACCATAAAGTCAATACTAACGAAACTTTA
CAAACACATCCATATATAGTGAGAAATCATCTATAGAAAATCTTAAGAAG
TTTTACTGACCAagtggtattttacagaccagaaagctccaacttttgca
tatttttacgatttttctACGGAAACGCCTCCAAACTTGGCTAATGCTAA
TAATACCATTGTCTTCTTTCATTTACAGAAAGGATAATAATTGGAGTGCA
AAGGACTTCATTGTAGGTTTACTGAATAGCAATACAACTGTCAAAATCAC
TGGTTATAGCTTAAAATTACAGTATCTCGTTTGCTTAAATTAAAGCCTTA
TTGTATCGTTTCAGTgaataaaaatgagtaaaagaaagaaaaatgagttA
GAACTTGTGTGTATTTGCCACTACCCTGGTAACTCAAGTTATTCGAAAGA
AGTCAAAGAATTAACTGAAAACAACATAAGCCGGTTGATTCAAGCAAAGG
AAAAACGGAAAGAGTTGGGTGGTGATCATCTCCATGAGGAACAAATCAAG
CAGATTCCAGAAACTTTCGATTTGAAAAAGCACGGTGTTCATTCAAGGCC
ATGTTACAACTTGTAAGTCATAATGttgattcttaatttttcatctattt
ACTCCATTCACTTTTTAGAATTTgtctctttaaaaaatattctagTGGGC
ATTTCTAATCACGAGCTTGAGTTGGTATGCATTTACTTTAGAGTGAGTCG
CTTATAATACATGTTAACATTTTCTGTTTTAAGGTTTACAAATGTTATCG
GAGACAAACGCTATTCAACAGAGGATGCAGACGAACCGTCGAGACGTAAG
TCAGCCAGATTATCGAGTCCACCACCACCAACAGAATCTCGGATAGTTTA
TCCAAATGTCTGCCAGCTGTGCGAAAAGTATAAAATgcaacataaaaaca
aaacccaTTACCCGCATAAAATATTGACATACAACACTGCTGATGCAATT
AAGGCATCTGCGAAGAATAAGGATAAACGGTTGTATTGTGACATTGCATT
TGTGGATATTGTTGCCAAAGAATTCCATGTGCATGACCCATGCTATAAAA
GCTTTACTCTTGAATACTACCGTGGAATCAACGAAAGCTCGAAAGCTTGC
AGCAGTAGAACCACAGCTCAACAACAAGAAACACAACCGAGCTACTCGAA
ATCAAATTACGAAGAGGTAAAACAATACGTCAATGATTCCATCATTAAGG
AAAAGAAACCcgcttcaatcaaacttttaCACGACATCTACGGAATAGGA
ATTGGTTGCACAAGCTACAGACAAAAACTTAAAGAACGCTTAAAAAGTGA
TTTCGGTGATAAGATATCATTCCTTAGTCAAGAAAATAAGACATTGCCAG
AAATCGTGATATCCAATGAATACTTCACTGCCGACAAAGTTTTATACTCT
GAAGAGCAGACGGTAAAGTATGCTGCAAAGATTTATGGGTGATAGAATTC
AATCAAACAAAACACCGTTCCATGAACCTTTGACcaaacaaaaaccaacc
ttgttcaagcaacaacaaattaagaagaagaaTAAAGACCATGCAAAGGA
AGTGATCAAAGTCAATCGGGATATCCTCGGAAAACTTTTGTCTATCTCAA
CGAAACTGCAGAGCCCAATCGATTTCAAAACCGTTTTATCCTATCCATTA
TGTCCAGTTCCACTTAGTTTGGCATTTCCAGACGGAACAAAACGAGGCAA
CAAGAAAAGCCAGCTGATTGAAATCATACTTCCTTCCGTTATTCCATCTT
CTGGTGATCGCACCTGCAACACATTGATAGTTGATCTAATCGCTCATTAC
CGAATCACATCAAAGGGAAAGGCAAAAACTTTCGCACAATTCATCACACG
ACTTCTTTCATCATTACCGAAAGGCCACCGTCGAGTTGATCTGGTCGCAG
ACTGTTATCGCAAATTCAGCATCAAAGCAGGTGAAAGAGTCAAACGTGGA
GCTTCCGATTCAGAAAAAGTCTTAATCAGATCTGTCGATACATTGGTACC
TAGTGATCTTAACCGTTTCTATTCCAATTCCGAAAACAAAACGCAACTGA
TTCAGCTGACATTCGACTTCATCAAAGCAAATCCCAAAAAGTGCCTCGAC
ATCCTTAAATGTGACAGCATAGTCATGTCTGGTGACCAATATTGTGAGAA
GGTAACTCGTGACAATGTGTCGAATGTGGAAAGTCTCGTTTCAGATCAAG
AAGAAGCTGATACCAAACTTATTTTACATACTTTGGACGCCCTCAACAGT
GACGGCAATGTATGTATTCGTTCTTCATCGGGAGATACCGACGTTTTGGT
CATTGCTATTGGTTTGCTTGGTGGAAATTCCCGTGTTCTCGTTGACACAG
GAAATGGCGACAGTAGGAAGAAAGTCTGGCTTGATTCAATTTCGTTGACA
AGTGAGCAGCAGAATGCACTTATTGGTTTCCATGCATTCACCGGAAACGA
CTATGTATCCTGCTTCTTTCGAAAGAGTAAACAGATATGTTGGGGCAAAA
TGAATGACCAAGATAAGGATGATTGGACAGCCCTTTTTGGAAATCTTGGA
GATTCGTGGGAGATTTCAGAGGATCAAATATCGAACTTCGAAAAGTACAT
CTGTCACCTATACTCATCAAAAAAGTCAAACATAAACGATGCAAGGtttc
agattttcgaaaaaaagcatttgaaatcaaaacaagtagCTGACCTTTCC
CTCCTTCCACCCTGCCGTAGAACTTCGTACAACACCTGAAAAGAGCAAAT
TACGTAGCAAAAATTTGGAAGTCAGCTGGGACAGCTATGGTGGAACTACC
CCCTCCCTCGCAGCACGGATGGACTGATGATGGAGAGATCTTTTGGACGG
ACGGAATGTTTCCCGACAGCTTGAATAACTTTGTCATTTCTGATGAAGAT
GAGGACGATGACGAGGATTTCGAGGACGATATCGAAGGCGATGTTTTCGA
TGAATCAGACGAAGAAGATGATTTAAGTGATGACGAGGACAGTGTTGAAG
AATGATCATTTACatagaattttgaaatatttcgtaGTTTTTTTACAGTA
TAAATGTAaaactttaaagataaaattttcaatcaaaacggCTAGGGTTT
GT Coding sequence (CDS) from alignment at scaffold_435:235640..238791+ >TCONS_00065262 ID=TCONS_00065262|Name=TCONS_00065262|organism=Clytia hemisphaerica|type=CDS|length=1320bp|location=Sequence derived from alignment at scaffold_435:235640..238791+ (Clytia hemisphaerica)
ATGCTGCAAAGATTTATGGGTGATAGAATTCAATCAAACAAAACACCGTT
CCATGAACCTTTGACcaaacaaaaaccaaccttgttcaagcaacaacaaa
ttaagaagaagaaTAAAGACCATGCAAAGGAAGTGATCAAAGTCAATCGG
GATATCCTCGGAAAACTTTTGTCTATCTCAACGAAACTGCAGAGCCCAAT
CGATTTCAAAACCGTTTTATCCTATCCATTATGTCCAGTTCCACTTAGTT
TGGCATTTCCAGACGGAACAAAACGAGGCAACAAGAAAAGCCAGCTGATT
GAAATCATACTTCCTTCCGTTATTCCATCTTCTGGTGATCGCACCTGCAA
CACATTGATAGTTGATCTAATCGCTCATTACCGAATCACATCAAAGGGAA
AGGCAAAAACTTTCGCACAATTCATCACACGACTTCTTTCATCATTACCG
AAAGGCCACCGTCGAGTTGATCTGGTCGCAGACTGTTATCGCAAATTCAG
CATCAAAGCAGGTGAAAGAGTCAAACGTGGAGCTTCCGATTCAGAAAAAG
TCTTAATCAGATCTGTCGATACATTGGTACCTAGTGATCTTAACCGTTTC
TATTCCAATTCCGAAAACAAAACGCAACTGATTCAGCTGACATTCGACTT
CATCAAAGCAAATCCCAAAAAGTGCCTCGACATCCTTAAATGTGACAGCA
TAGTCATGTCTGGTGACCAATATTGTGAGAAGGTAACTCGTGACAATGTG
TCGAATGTGGAAAGTCTCGTTTCAGATCAAGAAGAAGCTGATACCAAACT
TATTTTACATACTTTGGACGCCCTCAACAGTGACGGCAATGTATGTATTC
GTTCTTCATCGGGAGATACCGACGTTTTGGTCATTGCTATTGGTTTGCTT
GGTGGAAATTCCCGTGTTCTCGTTGACACAGGAAATGGCGACAGTAGGAA
GAAAGTCTGGCTTGATTCAATTTCGTTGACAAGTGAGCAGCAGAATGCAC
TTATTGGTTTCCATGCATTCACCGGAAACGACTATGTATCCTGCTTCTTT
CGAAAGAGTAAACAGATATGTTGGGGCAAAATGAATGACCAAGATAAGGA
TGATTGGACAGCCCTTTTTGGAAATCTTGGAGATTCGTGGGAGATTTCAG
AGGATCAAATATCGAACTTCGAAAAGTACATCTGTCACCTATACTCATCA
AAAAAGTCAAACATAAACGATGCAAGGtttcagattttcgaaaaaaagca
tttgaaatcaaaacaagtagCTGACCTTTCCCTCCTTCCACCCTGCCGTA
GAACTTCGTACAACACCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065262-exon-scaffold_435-1491911889:235640..236251 | TCONS_00065262-exon-scaffold_435-1491911889:235640..236251 | Clytia hemisphaerica | exon |
| TCONS_00065262-exon-scaffold_435-1510915933:235640..236251 | TCONS_00065262-exon-scaffold_435-1510915933:235640..236251 | Clytia hemisphaerica | exon |
| TCONS_00065262-exon-scaffold_435-1575043694:235640..236251 | TCONS_00065262-exon-scaffold_435-1575043694:235640..236251 | Clytia hemisphaerica | exon |
| TCONS_00065262-exon-scaffold_435-1491911889:236423..238791 | TCONS_00065262-exon-scaffold_435-1491911889:236423..238791 | Clytia hemisphaerica | exon |
| TCONS_00065262-exon-scaffold_435-1510915933:236423..238791 | TCONS_00065262-exon-scaffold_435-1510915933:236423..238791 | Clytia hemisphaerica | exon |
| TCONS_00065262-exon-scaffold_435-1575043694:236423..238791 | TCONS_00065262-exon-scaffold_435-1575043694:236423..238791 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_435 | supercontig | scaffold_435:235640..238791 + |
Blast
The following BLAST results are available for this feature:
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