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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065309 ID=TCONS_00065309|Name=TCONS_00065309|organism=Clytia hemisphaerica|type=transcript|length=1328bp
GTAGGTGACaaaataagcaaatcctcaaTAAGAAAACTTTGTTTAATACA
GAGTCGTATCAACCAGCGGAAGGGGCAGGACAAAGAGTGGAATGGAAACT
CAAGTatataatttttcaataaatttgaaaaaattctaacaGACTAACAA
CGGaatgtcaaaattttgatgatgatTTATTTATACATTTGCATCAAACA
TTTATGCATAACTTCCATATACCTAGAAAAGATTGCATCGTATTGTTTAA
CAAACTGTCTATAATTATATTCGGTAGTGTTAGTGTTAAAATCAGACCAA
GATTCCAACAACATTGTCAAGAAGAGTTCCATTTCTTTACGAGACCAATC
CAACTGTTTCATAAGCTCGATCAGCTTCTCAACACAATCAATAAAGAAAT
CACGGAGATCTTTGGAGTGTGTCAAAGAACCACCGAGCTGGAAAAGATTT
CTTGATATGGAACGAAAATTGGAATCAACACTTTTCTTGAAATGCAGTGT
TGTCACTTTCTTCTCTAAGCGTGTTGCCATGTACCCCTTATGGATATCTT
GGAATTCACGTTCAGTAATTGTATTTCGTAAATCTCGAAGATCCTGAACA
AAGTTACGGTCAATTTCGTCTGGGTCAGCATTTTTATACTGTGGCGTTCC
CTCTCCGCCACTCGTCCAACGCCCCAAAATATGATCAGCACAAATCATCA
GATcatcaaaattcaaataatttaaCTTCTTTTTGGTAATTTCAAATCGT
TCCAAAAACACAAAAACCAGAGGGTAATACTTCTCTACAAGAGCTTCAGA
AAAATGGAATTGATTCTTCAAAACATTGAGAAGGCTGTCCTCTACATCTT
CTAGcgttttaagaatgtttttgaCATTATCAAACTGTCGCCGGCAGCTA
TGCAAAGCAACTCCAGTCTTCTCGGAGACATCTTCCATATCTTTACGTAG
CTTAGCACTCATTTTCTTTCCAAGAATCTCCCTCATAACATCTTTATTGA
AAGCATAATAATGCTCCAGGAGGCTTTCTTTCTGTTCTGGAGAAATTGAT
GACGTAATTGGAGAATTCAGCAAAGGAGGGGATTGTAAAAAACGTTCCAA
ATAGTTAAATAAGGTGTATTGTTCAGCAACTTCAAGCTGCAAGAGGTTGA
ATGGAATATCTGTGACAGATGTTGGTACAAGACTGGCAAATCTTTTGGAT
GCTTCTTGTCTGGTGTGTCCATTGGTCCACATTGAAAATAAATCCATATC
AATGGTCATCGGATCCGAGAAACATATTGAAAAATCATCCATctctttta
tataattttttttttgcaaatttttcac Run BLAST on NCBI protein sequence of TCONS_00065309-protein >TCONS_00065309-protein ID=TCONS_00065309-protein|Name=TCONS_00065309-protein|organism=Clytia hemisphaerica|type=polypeptide|length=383bp
VKNLQKKNYIKEMDDFSICFSDPMTIDMDLFSMWTNGHTRQEASKRFASL
VPTSVTDIPFNLLQLEVAEQYTLFNYLERFLQSPPLLNSPITSSISPEQK
ESLLEHYYAFNKDVMREILGKKMSAKLRKDMEDVSEKTGVALHSCRRQFD
NVKNILKTLEDVEDSLLNVLKNQFHFSEALVEKYYPLVFVFLERFEITKK
KLNYLNFDDLMICADHILGRWTSGGEGTPQYKNADPDEIDRNFVQDLRDL
RNTITEREFQDIHKGYMATRLEKKVTTLHFKKSVDSNFRSISRNLFQLGG
SLTHSKDLRDFFIDCVEKLIELMKQLDWSRKEMELFLTMLLESWSDFNTN
TTEYNYRQFVKQYDAIFSRYMEVMHKCLMQMYK Run BLAST on NCBI transcript from alignment at scaffold_435:81717..83044 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065309 ID=TCONS_00065309|Name=TCONS_00065309|organism=Clytia hemisphaerica|type=transcript|length=1328bp|location=Sequence derived from alignment at scaffold_435:81717..83044 (Clytia hemisphaerica)
gtgaaaaatttgcaaaaaaaaaattatataaaagagATGGATGATTTTTC
AATATGTTTCTCGGATCCGATGACCATTGATATGGATTTATTTTCAATGT
GGACCAATGGACACACCAGACAAGAAGCATCCAAAAGATTTGCCAGTCTT
GTACCAACATCTGTCACAGATATTCCATTCAACCTCTTGCAGCTTGAAGT
TGCTGAACAATACACCTTATTTAACTATTTGGAACGTTTTTTACAATCCC
CTCCTTTGCTGAATTCTCCAATTACGTCATCAATTTCTCCAGAACAGAAA
GAAAGCCTCCTGGAGCATTATTATGCTTTCAATAAAGATGTTATGAGGGA
GATTCTTGGAAAGAAAATGAGTGCTAAGCTACGTAAAGATATGGAAGATG
TCTCCGAGAAGACTGGAGTTGCTTTGCATAGCTGCCGGCGACAGTTTGAT
AATGtcaaaaacattcttaaaacgCTAGAAGATGTAGAGGACAGCCTTCT
CAATGTTTTGAAGAATCAATTCCATTTTTCTGAAGCTCTTGTAGAGAAGT
ATTACCCTCTGGTTTTTGTGTTTTTGGAACGATTTGAAATTACCAAAAAG
AAGttaaattatttgaattttgatgATCTGATGATTTGTGCTGATCATAT
TTTGGGGCGTTGGACGAGTGGCGGAGAGGGAACGCCACAGTATAAAAATG
CTGACCCAGACGAAATTGACCGTAACTTTGTTCAGGATCTTCGAGATTTA
CGAAATACAATTACTGAACGTGAATTCCAAGATATCCATAAGGGGTACAT
GGCAACACGCTTAGAGAAGAAAGTGACAACACTGCATTTCAAGAAAAGTG
TTGATTCCAATTTTCGTTCCATATCAAGAAATCTTTTCCAGCTCGGTGGT
TCTTTGACACACTCCAAAGATCTCCGTGATTTCTTTATTGATTGTGTTGA
GAAGCTGATCGAGCTTATGAAACAGTTGGATTGGTCTCGTAAAGAAATGG
AACTCTTCTTGACAATGTTGTTGGAATCTTGGTCTGATTTTAACACTAAC
ACTACCGAATATAATTATAGACAGTTTGTTAAACAATACGATGCAATCTT
TTCTAGGTATATGGAAGTTATGCATAAATGTTTGATGCAAATGTATAAAT
AAatcatcatcaaaattttgacattCCGTTGTTAGTCtgttagaattttt
tcaaatttattgaaaaattatatACTTGAGTTTCCATTCCACTCTTTGTC
CTGCCCCTTCCGCTGGTTGATACGACTCTGTATTAAACAAAGTTTTCTTA
ttgaggatttgcttattttGTCACCTAC Coding sequence (CDS) from alignment at scaffold_435:81717..83044 >TCONS_00065309 ID=TCONS_00065309|Name=TCONS_00065309|organism=Clytia hemisphaerica|type=CDS|length=1152bp|location=Sequence derived from alignment at scaffold_435:81717..83044 (Clytia hemisphaerica)
gtgaaaaatttgcaaaaaaaaaattatataaaagagATGGATGATTTTTC
AATATGTTTCTCGGATCCGATGACCATTGATATGGATTTATTTTCAATGT
GGACCAATGGACACACCAGACAAGAAGCATCCAAAAGATTTGCCAGTCTT
GTACCAACATCTGTCACAGATATTCCATTCAACCTCTTGCAGCTTGAAGT
TGCTGAACAATACACCTTATTTAACTATTTGGAACGTTTTTTACAATCCC
CTCCTTTGCTGAATTCTCCAATTACGTCATCAATTTCTCCAGAACAGAAA
GAAAGCCTCCTGGAGCATTATTATGCTTTCAATAAAGATGTTATGAGGGA
GATTCTTGGAAAGAAAATGAGTGCTAAGCTACGTAAAGATATGGAAGATG
TCTCCGAGAAGACTGGAGTTGCTTTGCATAGCTGCCGGCGACAGTTTGAT
AATGtcaaaaacattcttaaaacgCTAGAAGATGTAGAGGACAGCCTTCT
CAATGTTTTGAAGAATCAATTCCATTTTTCTGAAGCTCTTGTAGAGAAGT
ATTACCCTCTGGTTTTTGTGTTTTTGGAACGATTTGAAATTACCAAAAAG
AAGttaaattatttgaattttgatgATCTGATGATTTGTGCTGATCATAT
TTTGGGGCGTTGGACGAGTGGCGGAGAGGGAACGCCACAGTATAAAAATG
CTGACCCAGACGAAATTGACCGTAACTTTGTTCAGGATCTTCGAGATTTA
CGAAATACAATTACTGAACGTGAATTCCAAGATATCCATAAGGGGTACAT
GGCAACACGCTTAGAGAAGAAAGTGACAACACTGCATTTCAAGAAAAGTG
TTGATTCCAATTTTCGTTCCATATCAAGAAATCTTTTCCAGCTCGGTGGT
TCTTTGACACACTCCAAAGATCTCCGTGATTTCTTTATTGATTGTGTTGA
GAAGCTGATCGAGCTTATGAAACAGTTGGATTGGTCTCGTAAAGAAATGG
AACTCTTCTTGACAATGTTGTTGGAATCTTGGTCTGATTTTAACACTAAC
ACTACCGAATATAATTATAGACAGTTTGTTAAACAATACGATGCAATCTT
TTCTAGGTATATGGAAGTTATGCATAAATGTTTGATGCAAATGTATAAAT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065309-exon-scaffold_435-1491911889:81717..83044 | TCONS_00065309-exon-scaffold_435-1491911889:81717..83044 | Clytia hemisphaerica | exon |
| TCONS_00065309-exon-scaffold_435-1510915933:81717..83044 | TCONS_00065309-exon-scaffold_435-1510915933:81717..83044 | Clytia hemisphaerica | exon |
| TCONS_00065309-exon-scaffold_435-1575043694:81717..83044 | TCONS_00065309-exon-scaffold_435-1575043694:81717..83044 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_435 | supercontig | scaffold_435:81717..83044 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008614 | FIBP |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0017134 | fibroblast growth factor binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0017134 |
fibroblast growth factor binding |
Blast
BLAST of TCONS_00065309 vs. Swiss-Prot (Human)
Match: FIBP (Acidic fibroblast growth factor intracellular-binding protein OS=Homo sapiens GN=FIBP PE=1 SV=3) HSP 1 Score: 220.705 bits (561), Expect = 9.342e-67 Identity = 123/376 (32.71%), Postives = 203/376 (53.99%), Query Frame = -1
Query: 183 DFSICFSDPMTIDMDLFSMWTNGHTRQEASK---RFASLVPTSVTDIPFNLLQLEVAEQYTLFNYLERFLQSPPLLNSPITSSISPEQKESLLEHYYAFNKDVMREILGKKMSAKLRKDMEDVSEKTGVALHSCRRQFDNVKNILKTLEDVEDSLLNVLKNQFHFSEALVEKYYPLVFVFLERFEITKKKLNYLNFDDLMICADHILGRWTSGGEGTP-----QYKNADPDEIDRNFVQDLRDLRNTITEREFQDIHKGYMATRLEKKVTTLHFKKSVDSNFRSISRNLFQLGGSLTHSKDLRDFFIDCVEKLIELMKQLDWSRKEMELFLTMLLESWSDFNTNTTEYNYRQFVKQYDAIFSRYMEVMHKCLMQMY 1286
+ I + ID D++ +W +G++ +A R L T T +LQ + + Y F+ LER L +PP L + I P ++ L+E YYAF++ +RE+LGKK+S +KD++D+S KTG+ L SCRRQFDN K + K +E++ SL++ ++ F S+ L Y +VF RFE KKKL YL+F D CA+ ++ WT G G + ++D+ F+QDL++L+ + +++ D+HK + T L K+ +++NF+++SR L + LTH+KD+RD F+D VEK +E + W ++ FL S + +R + A++ RYM + CL+++Y
Sbjct: 4 ELDIFVGNTTLIDEDVYRLWLDGYSVTDAVALRVRSGILEQTGATAA---VLQSDTMDHYRTFHMLERLLHAPPKLLHQLIFQIPPSRQALLIERYYAFDEAFVREVLGKKLSKGTKKDLDDISTKTGITLKSCRRQFDNFKRVFKVVEEMRGSLVDNIQQHFLLSDRLARDYAAIVFFANNRFETGKKKLQYLSFGDFAFCAELMIQNWTLGAVGEAPTDPDSQMDDMDMDLDKEFLQDLKELKVLVADKDLLDLHKSLVCTALRGKLGVF---SEMEANFKNLSRGLVNVAAKLTHNKDVRDLFVDLVEKFVEPCRSDHWPLSDVRFFLNQYSASVHSLD------GFR-----HQALWDRYMGTLRGCLLRLY 362
The following BLAST results are available for this feature:
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