|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065166 ID=TCONS_00065166|Name=TCONS_00065166|organism=Clytia hemisphaerica|type=transcript|length=6016bpRun BLAST on NCBI transcript from alignment at scaffold_433:133339..162574+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065166 ID=TCONS_00065166|Name=TCONS_00065166|organism=Clytia hemisphaerica|type=transcript|length=29236bp|location=Sequence derived from alignment at scaffold_433:133339..162574+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00065166 vs. Swiss-Prot (Human)
Match: CNTN4 (Contactin-4 OS=Homo sapiens GN=CNTN4 PE=1 SV=1) HSP 1 Score: 339.347 bits (869), Expect = 1.991e-96 Identity = 274/1045 (26.22%), Postives = 454/1045 (43.44%), Query Frame = 1
Query: 166 FVVLLQITCILSNDDYGPLPGFKQQPIDTLI----ESHNQSVVCSIRGEKPLTVTWRKENLVLDS-KKLKYLSVSKEGSLTLYNTQRGRDEGNWRCQVSNSYGTVLSRSAKVTFPYMNEFSEHDLR-ITIEEGQPALLACYAPDSYPDRYIHWLKLRNRGHFPLQLDTNSHFTTSLDGDLYFSYTTRSDEGVYYCSVENSKL-RRFERRTVSLKVTRKARQSNAPPKI-WEFSDRI-AMKDSNFVLECIAYGRPVPVMRFRNAKTGEELSGSQQIGNRLRYQFGRFGKQHEGEYLCEAENAYGEKANKTAYLKMESQPEIMEENEFHSIDRAIDSELILPCVANSIPQASYTWLFNAAPIDDTKNKDIEIHQGTLKISKLMKYHQGFYQCIAHNQHGEDLKTIYVTVVEYAPDFKKQSSIPPATSTQALIGGTAIINCVPNGAPVPKVYWKKLNTTLDVVTFDPRVRQTSTGSLEIRDIKKSDEGIYVCVATNKLGTDEAAGELKVNGGLAITEPLSDVSFVRTGNTITLTCKYNSNENVEIKFEWKFGXXXXXXXXXYNIKSSKFKR------QSILTIKNAVFKDTGLYTCKVVGTKQRSAEKTQRITVSDSXXXXXXXXXXXXVKTTTVPFLKTTRRTIRGPPDPPTHVTATDLSGLNIKISWSLGRENGAPTTKVYIQARTSFDLDVWHTIK-VSNKTEGYRFSE-IVEMSPWIEFRIRVISENKHGKSKPSEETSKWIRTPTAKPMKYPTNIHGKGTGPSELTVSFDPLDEIDQNAPGIEYIVHYREKGTSYGLIQRKVPKDQHSLKLSFINDDSY-YRPYEFQIQAKNKDGYGPMSPVHIAYTGERVPITVPTNLKVKLDDEMNAVALWDEVSKTRNAMRGKFQGYKFIYWK-EPKENYPVIERYEVTKAESIQVRLKAHSTYYFQVLAFNNVGDGPRSIRYGAXXXXXXXXXXXXNFKIIDASQGEVTLSWTE--PLHKNGVIEKYLLTYISMKTNKKQQGNLRSDERTFKLKNLAPNEPYLFKLAAVTGAGISEESE 3237
+VL L++D P F Q+P + E + C ++G + W+ +D+ +Y V EGSL + N + +D G ++C +NS+GT++SR AK+ F Y++ F +++ GQ +L C P + W+ +P D N F + G+LY + +SD G Y C V N+ + L + PKI +F + + K + LEC A G PVP + +R A +++ + + F ++ G Y C AEN+ G+ + L +QP ++ + + I A++ + C AN P+ +Y WL N P+ T+++ I+I QGTL I+ + G YQC+A N+HG ++V+ PDF + T +GG +I C P +P P WKK D++ + R+ + G+L I ++ KSD G Y C+ATN GT + G L V + P S + V G +I L C+ + +++I F W F ++ F+R L I+N K G Y C V + R + I +RGPP PP VT +++ ++SW G +N +P T IQART F + W + V +G F+ +V ++PW+E+ R ++ N G +PS + K RT A P P N+ G G SEL ++++ + E QN G Y+V +R G ++ D + + F N+ + + P+E ++ N G GP SP + Y+ E P P ++ + + W + RG+ QGY+ YW+ E KE R + + LK Y+ V A+N+ G GP S T PP N I ++S ++ L+W + L ++ Y + Y + N++ ++ +T +L +E Y+ ++ + G SE
Sbjct: 7 LLVLQSFILCLADDSTLHGPIFIQEPSPVMFPLDSEEKKVKLNCEVKGNPKPHIRWKLNGTDVDTGMDFRYSVV--EGSLLINNPNKTQDAGTYQCTATNSFGTIVSREAKLQFAYLDNFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWI----FNEYPSYQD-NRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPTAKGATVKLECFALGNPVPTIIWRRADGKPIARKARRHKSNGILEIPNFQQEDAGLYECVAENSRGKNVAR-GQLTFYAQPNWIQ--KINDIHVAMEENVFWECKANGRPKPTYKWLKNGEPL-LTRDR-IQIEQGTLNITIVNLSDAGMYQCLAENKHGVIFSNAELSVIAVGPDFSRTLL---KRVTLVKVGGEVVIECKPKASPKPVYTWKK---GRDILKENERITISEDGNLRIINVTKSDAGSYTCIATNHFGTASSTGNLVVKDPTRVMVPPSSMD-VTVGESIVLPCQVTHDHSLDIVFTWSFN----GHLIDFDRDGDHFERVGGQDSAGDLMIRNIQLKHAGKYVCMVQTSVDRLSAAADLI--------------------------------VRGPPGPPEAVTIDEITDTTAQLSWRPGPDNHSPITMYVIQARTPFSVG-WQAVSTVPELIDGKTFTATVVGLNPWVEYEFRTVAANVIGIGEPSRPSEK-RRTEEALPEVTPANVSGGGGSKSELVITWETVPEELQNGRGFGYVVAFRPYGKMIWMLTVLASAD--ASRYVFRNESVHPFSPFEVKVGVFNNKGEGPFSPTTVVYSAEEEPTKPPASIFARSLSATDIEVFW---ASPLEKNRGRIQGYEVKYWRHEDKEENARKIRTVGNQTSTKITNLKGSVLYHLAVKAYNSAGTGPSSATVNVTTRKPPPSQPPGNI-IWNSSDSKIILNWDQVKALDNESEVKGYKVLY---RWNRQSSTSVIETNKTSVELSLPFDEDYIIEIKPFSDGGDGSSSE 985 The following BLAST results are available for this feature:
BLAST of TCONS_00065166 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.