TCONS_00065133 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065133
Unique NameTCONS_00065133
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length367

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065133 ID=TCONS_00065133|Name=TCONS_00065133|organism=Clytia hemisphaerica|type=transcript|length=367bp
ccggtgtccaaaattccctgtatgcaacaccggactgacatcggacttat
tgcgtccggtgtagcgaaaggatactttttgccaccggacaaatacaccg
gacagtccggtgcatCGGCAGGGTCCTCGAACAACAGACTGTTGATGTCA
CTGGTGGTCTAGAACCTGAACATGATGATGGTGATGCTCTTCAGCAAGAT
ACAGAgAATGTTTGATGATCAAATGTACTCTACAACATTGGGGAAAGCAT
TAAGCACAGTCATCTGTGAGTATAACCTTTTTAAACTGAAATTCTATTAC
TACACATTTTAATGGAACTGCTGTAAACAATGTCACTTGTCAGAGCtaaa
tgaatttaaattttttt
Run BLAST on NCBI

transcript from alignment at scaffold_431:35875..39090-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065133 ID=TCONS_00065133|Name=TCONS_00065133|organism=Clytia hemisphaerica|type=transcript|length=3216bp|location=Sequence derived from alignment at scaffold_431:35875..39090- (Clytia hemisphaerica)
CCGGTGTCCAAAATTCCCTGTATGCAACACCGGACTGACATCGGACTTAT
TGCGTCCGGTGTAGCGAAAGGATACTTTTTGCCACCGGACAAATACACCG
GACAGTCCGGTGCATCGGCAGGGTCCTCGAACAACAGACTGTTGATGTCA
CTGGTGGTCTAGAACCTGAACATGATGATGGTGATGCTCTTCAGCAAGAT
ACAGAGTGAGTGATTATTATAAATCCCTAAATTGCAGTAGCAATTTTTAC
TGCAATTGCGGTATAAAAAATCACCTATACTTCGAGCGCTGTTGTTAATA
TAGGGTTTCGTGGAAATAGGGTTTTCTGTGGCTATGGGGTCTCTGAAAAA
AACTGCGAAGGAGAGTAGTTCGTATTTTTACAAGGGGGTTTGCTTCATTT
TTTACGAAATATATCATGTTATATATACCCCCGTCTTCCCCTTATCTTAG
AAATCAACACACGAAGGAGTGTTGTTTACAGAACACATCTGTGAAAAATT
AATATCTTCTCTCTTTTCTCTTTAACTTTCTTTTCTATTATCTATGGGAC
CGCATATCCACGAGAGACCCTATTTTAAAGAAAAACCCTATTTTAAAAAC
AGTGCTCGAATGAACTCTCTAAAAAATCCCTTTTAAATTTTTCACATACC
CAGGCAGTGAGTGTCAATAGACCTTTTTTTAATGAGGCCACCCTGTTGAA
TAATTATGTAGTCCAGCCATAAAAACAATGATAGAGCCATGCATAATTAC
TGTATCATGCATATTGTAATAATTATGCATGGTTTTATCATTGTTTTTCT
GCTGGACTACATAATTATTCAACAGGGTGGCCTCTTTGAAAAAAGGTCTA
TCGAACATCAATTGAACGCAATCAAATATCAATCAAATCTGAAATTGCGG
TAATATTCGATTGATTCGATTGCGTTCGACAATCGAATTTCAATTGATTC
GATTGCTTTCGACAATGGCATTTCGGTCGATTGCGTTCTCGATTCGGTTC
GACTGGTTCGATCGTCGATTCCATTCGATTGAGATCGTCTGGCCGTGGTG
AAATTCCCTTAGAAAGTATGCGAAACATATGCAAAAAGGAAGTATTAATA
TAAAACTTACATGCATAATTCGCATTATATTAAAGTAATCTTGTTGAAGA
AAGATTAAAAATTTGCTTCTCTTGAAATCTAAAATTTTAAAACGGCAATT
CGGCCACCATTTCACCGAACCTCCAAAGTCATTTGATTTGAGTTAAGGAA
TGGCGTATTTAAAAATACACGATTTCACTTTCAATTTTAAAGTAAGTGAA
AATACAGACCAGATATGCAACAGTCCCATATTTCGACCAATCGTCCCAAG
TTAGAGCAGTCGACGGTACCCAAATCAAAACAACATTTTACACGAAAAGA
ATTTTTTAGTAGACCTTTTTCCTGCGAACTGAAAATAATAAAAAGAACCC
AGTTTCCTTTTGAATCTAATGTGACCAACATACTGGCCGTCACGGCGTGC
AGCCTCTTAGCGGCTAGAGCGTGTGTTTTTAATAAATAAAGAAGGGGAAA
CCAGGCAAAGTGCGCAAATTATTTTTATCACGTGACTTGAAGCGTAATAA
AGTTGTAAAATTTTAATGATGGATGTTGTAAAATTTTAATGATGGATATG
AGAAAGTGAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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CAATGTAAATATAATTCGGATAAAATCAAAGAATGAATGACTAATTTTTC
ATAGGAATGTTTGATGATCAAATGTACTCTACAACATTGGGGAAAGCATT
AAGCACAGTCATCTGTGAGTATAACCTTTTTAAACTGAAATTCTATTACT
ACACATTTTAATGGAACTGCTGTAAACAATGTCACTTGTCAGAGCTAAAT
GAATTTAAATTTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040838XLOC_040838Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065133-exon-scaffold_431-1575043694:38886..39090TCONS_00065133-exon-scaffold_431-1575043694:38886..39090Clytia hemisphaericaexon
TCONS_00065133-exon-scaffold_431-1575043694:35875..36036TCONS_00065133-exon-scaffold_431-1575043694:35875..36036Clytia hemisphaericaexon
TCONS_00065133-exon-scaffold_431-1510915933:38886..39090TCONS_00065133-exon-scaffold_431-1510915933:38886..39090Clytia hemisphaericaexon
TCONS_00065133-exon-scaffold_431-1510915933:35875..36036TCONS_00065133-exon-scaffold_431-1510915933:35875..36036Clytia hemisphaericaexon
TCONS_00065133-exon-scaffold_431-1491911889:38886..39090TCONS_00065133-exon-scaffold_431-1491911889:38886..39090Clytia hemisphaericaexon
TCONS_00065133-exon-scaffold_431-1491911889:35875..36036TCONS_00065133-exon-scaffold_431-1491911889:35875..36036Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_431supercontigscaffold_431:35875..39090 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.58134	3.28638	5.84964	7.73256	1.56549	0.918305	1.92921	1.72838	1.45124	2.32224	2.42207	1.71455	2.38477	3.08278	2.21731	1.19603	0.255288	2.30246	1.35288	1.2503	4.37392	4.49803	0	0.57763	0.701022	1.4144	5.06622	0	4.78338	4.48948
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065133 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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