TCONS_00065124 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065124
Unique NameTCONS_00065124
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length306

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065124 ID=TCONS_00065124|Name=TCONS_00065124|organism=Clytia hemisphaerica|type=transcript|length=306bp
tttagattctttcCGGGAAAAATCACACCAAGCAAAACAACACCATGCAA
ACAAAAGTGAAATCAACGCTAATATAAGCCTAAGGAAGATTCCAAGGAGT
GGCGTTTCAAAGTTTGTGGAAAATCTCCATTGGTCaacaaaaaatgtaaa
tctCCTAATCGAAATCGCAGAATCTGAGCCCAATTCATGGATCATCGATT
CAAAAGACGCAAAAACAATTATACCAGGTGATATCCAACCAGTACAGAAT
CCTGGTAAATCGTGGAAAAAGAGGCTTGTTTACGAGGATCACACGTTCAA
TCAAAG
Run BLAST on NCBI

protein sequence of TCONS_00065124-protein

>TCONS_00065124-protein ID=TCONS_00065124-protein|Name=TCONS_00065124-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
LDSFREKSHQAKQHHANKSEINANISLRKIPRSGVSKFVENLHWSTKNVN
LLIEIAESEPNSWIIDSKDAKTIIPGDIQPVQNPGKSWKKRLVYEDHTFN
Q
Run BLAST on NCBI

transcript from alignment at scaffold_431:61..1380+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065124 ID=TCONS_00065124|Name=TCONS_00065124|organism=Clytia hemisphaerica|type=transcript|length=1320bp|location=Sequence derived from alignment at scaffold_431:61..1380+ (Clytia hemisphaerica)
tttagattctttcCGGGAAAAATCACACCAAGCAAAACAACACCATGCAA
ACAAAAGTGAAATCAACGCTAATATAAGCCTAAGGAAGATTCCAAGGAGT
GGCGTTTCAAAGTTTGTGGAAAATCTCCATTGGTCaacaaaaaatgtaaa
tctCCTAATCGAAATCGCAGAATCTGAGCCCAATTCATGGATCATCGATT
CAAAAGACGCAAAAACAATTATACCAGGTAAAACAGAACCTAAGGATGCT
GTTATAAGATCTCATATGTTTTAGCCGAAACAGTAGCATAATGAGTGGGG
GCACTTATAGGAGGCAAATGTGTATCCGAAAAGGTCATATTTTTGGGTTA
CCTTATTGGAATATATTTTCGAGTTTTCCAGTTTAGATTCGCCACATTCA
ATACACGCAaagttgttttcaaaatatgccggaaatcacacatttttctc
agaaatcaaagataatgaaatctttgagggttaaaagtgacatttcttTA
TTGCAGTACTCCACTAGCGTTTCTTTCCCGTGCTGTGCGAAAAAATCGCA
AACCAtaaagtactctcgggtacctaataagcgtcccccgctaattaatt
tttcgaaaatcttccaCCCAGGtcatttttattccaccccccgtttatta
attaaattttgggaaaatattttgaaagctcCTCTTTTAAACCCTTATTc
ttctgtattagcctccttttcaaaacttttccacccaggacatttttatt
ccaaccacCACTAGTGTTTTAGATTTTTCCACCCAACGCTTACTTATTTC
AGAACCCTCCagattttgtttcttttctatAACAAAAATTTAGGGGAGGC
TTCTGGATGATGCTCGGGATTATGGtgtatttattgatttttcccAACCC
TGCCCCAATTTAGACGTCTACAAACATATGAAACAGATCAAATTAGAGAA
GTGATCTGTGTGGCAATCTCAAACAGGGTATATGAATTCACAGATACCAC
ATagacaaaatttcatattttgtttgATTGAATAGATTTTCAAGGACCTC
ACCCATATATAGTCTTTTCGTCTTTGTATTTGTAGTTTTGTTCATACCTT
ACAGGTAATACCAGACTAGAACTCGCACATTTTGAGCTAATGTTTAAACA
ATTACTGAATCCTGAATCCGTTGATTTATTTCTATACACATATATATTTT
TGTGAAGTATTCTAGattaaaagttattttctttCTAATAGGTGATATCC
AACCAGTACAGAATCCTGGTAAATCGTGGAAAAAGAGGCTTGTTTACGAG
GATCACACGTTCAATCAAAG

Coding sequence (CDS) from alignment at scaffold_431:61..1380+

>TCONS_00065124 ID=TCONS_00065124|Name=TCONS_00065124|organism=Clytia hemisphaerica|type=CDS|length=606bp|location=Sequence derived from alignment at scaffold_431:61..1380+ (Clytia hemisphaerica)
ttagattctttcCGGGAAAAATCACACCAAGCAAAACAACACCATGCAAA
CAAAAGTGAAATCAACGCTAATATAAGCCTAAGGAAGATTCCAAGGAGTG
GCGTTTCAAAGTTTGTGGAAAATCTCCATTGGTCaacaaaaaatgtaaat
ctCCTAATCGAAATCGCAGAATCTGAGCCCAATTCATGGATCATCGATTC
AAAAGACGCAAAAACAATTATACCAGGTGATATCCAACCAGTACAGAATC
CTGGTAAATCGTGGAAAAAGAGGCTTGTTTACGAGGATCACACGTTCAAT
CAAttagattctttcCGGGAAAAATCACACCAAGCAAAACAACACCATGC
AAACAAAAGTGAAATCAACGCTAATATAAGCCTAAGGAAGATTCCAAGGA
GTGGCGTTTCAAAGTTTGTGGAAAATCTCCATTGGTCaacaaaaaatgta
aatctCCTAATCGAAATCGCAGAATCTGAGCCCAATTCATGGATCATCGA
TTCAAAAGACGCAAAAACAATTATACCAGGTGATATCCAACCAGTACAGA
ATCCTGGTAAATCGTGGAAAAAGAGGCTTGTTTACGAGGATCACACGTTC
AATCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040830XLOC_040830Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065124-proteinTCONS_00065124-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065124-exon-scaffold_431-1491911889:61..287TCONS_00065124-exon-scaffold_431-1491911889:61..287Clytia hemisphaericaexon
TCONS_00065124-exon-scaffold_431-1510915933:61..287TCONS_00065124-exon-scaffold_431-1510915933:61..287Clytia hemisphaericaexon
TCONS_00065124-exon-scaffold_431-1575043694:61..287TCONS_00065124-exon-scaffold_431-1575043694:61..287Clytia hemisphaericaexon
TCONS_00065124-exon-scaffold_431-1491911889:1302..1380TCONS_00065124-exon-scaffold_431-1491911889:1302..1380Clytia hemisphaericaexon
TCONS_00065124-exon-scaffold_431-1510915933:1302..1380TCONS_00065124-exon-scaffold_431-1510915933:1302..1380Clytia hemisphaericaexon
TCONS_00065124-exon-scaffold_431-1575043694:1302..1380TCONS_00065124-exon-scaffold_431-1575043694:1302..1380Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_431supercontigscaffold_431:61..1380 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.469901	0	0	0	0	0	0.486158	0	0.622619	0.222722	0.548751	1.40613	4.66234	0.406567	0	0.5171	0.419069	1.14298	0.392415	0	0	0.534857	0.40567	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065124 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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