TCONS_00065086 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065086
Unique NameTCONS_00065086
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length314

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065086 ID=TCONS_00065086|Name=TCONS_00065086|organism=Clytia hemisphaerica|type=transcript|length=314bp
TACGTGAAACATTTCACCGAAGGATTCCTGATGTTCACCCAAATACATTA
GTCAGCATGGGCAGACATGGGTTGAAAAATGCTGACTTTAAAGAGGAAAC
CATTGATCAACTCGTTGATCAACTGAGGACACTTTATCCTCTGTCACCAT
ACACTTATGTGTATGGGCTTCTTATGTCCACCATTCTTAAATCGATGGTG
TTTAGTTAGGAGGCTAAATTTTACCTTCAATCCGGCGGAAAAAACAACCA
GAAGATAGCCATGGAAAGTTTCAGTAGACAAACGaAAACTAGACGGGAAT
CGCAATTTCAAGTC
Run BLAST on NCBI

transcript from alignment at scaffold_43:12882..13501+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065086 ID=TCONS_00065086|Name=TCONS_00065086|organism=Clytia hemisphaerica|type=transcript|length=620bp|location=Sequence derived from alignment at scaffold_43:12882..13501+ (Clytia hemisphaerica)
TACGTGAAACATTTCACCGAAGGATTCCTGATGTTCACCCAAATACATTA
GTCAGCATGGGCAGACATGGGTTGAAAAATGCTGACTTTAAAGAGGAAAC
CATTGATCAACTCGTTGATCAACTGAGGACACTTTATCCTCTGTCACCAT
ACACTTATGTGTATGGGCTTCTTATGTCCACCATTCTTAAATCGATGGTG
TTTAGTTAGGAGGCTAAATTTTACCTTCAATCCGGCGGAAAAAACAACCA
GAAGATAGCCATGGAAAGTTTCAGTAGACAAACGagtaagttttttttac
aaagaaaataTGGAATTCTCTTTTAATCTTTTATCTAAATTTTCCATCGA
TGAGGTAATAATTTACAAATGCATTCCAATGCTTTTTAAGAGACCTGAAG
CTTGCACTCCTTCAAATAGAAAGTTTTATTGTTTAATAGTTAAAAACAGA
GGATGTCCATAATagcaaataaaatgaaattagtGAGATGTAACACAAAA
CCATGAGGATGACTTGAATTATTTCCTATTTCCTGAAATTCTATTTCCTT
TTCAATTTAGTCttctatttgataaaatcttgcATTTTTAGAAACTAGAC
GGGAATCGCAATTTCAAGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040813XLOC_040813Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065086-exon-scaffold_43-1491911889:12882..13166TCONS_00065086-exon-scaffold_43-1491911889:12882..13166Clytia hemisphaericaexon
TCONS_00065086-exon-scaffold_43-1510915933:12882..13166TCONS_00065086-exon-scaffold_43-1510915933:12882..13166Clytia hemisphaericaexon
TCONS_00065086-exon-scaffold_43-1575043694:12882..13166TCONS_00065086-exon-scaffold_43-1575043694:12882..13166Clytia hemisphaericaexon
TCONS_00065086-exon-scaffold_43-1491911889:13473..13501TCONS_00065086-exon-scaffold_43-1491911889:13473..13501Clytia hemisphaericaexon
TCONS_00065086-exon-scaffold_43-1510915933:13473..13501TCONS_00065086-exon-scaffold_43-1510915933:13473..13501Clytia hemisphaericaexon
TCONS_00065086-exon-scaffold_43-1575043694:13473..13501TCONS_00065086-exon-scaffold_43-1575043694:13473..13501Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_43supercontigscaffold_43:12882..13501 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	5.01088	5.39954	7.38289	15.8564	20.7796	9.51988	7.52907	21.1471	9.66022	8.39908	0	0.205842	0	0.519824	0	0	0	0	0	0	11.6056	9.06299	0	0.988642	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065086 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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