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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065045 ID=TCONS_00065045|Name=TCONS_00065045|organism=Clytia hemisphaerica|type=transcript|length=1396bp
attaaaGTGCATGAATTGTCTCAAGTTTAAATAACAACGTTAGCTGTCTA
AACAGCAACGGTCTATAACACTAAGACGCCTATCTATATTTAATCATGGT
TGGTAAAAATAGCTGTGTATATATATTTTGCATATATATCACGATAGCAA
TCGAGAAAGCTATCATTTGAAGACAGGATTTGCCTAGTAAGGACCAAAAA
GTTTTCAGTCATCTTCTTTTAAGGAACGATAATGTCTCAGCAAAAACAAT
CCGTTCCTGGTAAACCTCAAATCCCGATCGCCTGGTGTTTTGGGTACGGA
TCGCTGGTAGAATCCTACCATAACAAAGCGAAATATGTTGAAGTGAATAT
CAATTATCGAAGAGTGTGGAATGCATGGAACACAAAAGCACGTGCAACTT
TCCTTGGTCTTGAAAAGACAANGAAGAGTGTGGAATGCATGGAACACAAA
AGCACGTGCAACTTTCCTTGGTCTTGAAAAATGTGCCGTAAAGACAGCCA
TTAATGGAGTGATCTATCCCATTTATTCGCAAGAGGAGATTAGAGCATTG
AAATTACGTGAGCAAGGTTACTCACAACTCCCCATTCCTCACGAGGACGT
CAAAGTTTTGAACGAAGGCTTAACCGATACCATGAAAAACATGACATTGA
GCCCTACAATGGAGCTGTTCACTTTTGTCCCTAACAGTGCTGGTAACGCG
CCAGAAGCTTGGTTCCCCATCTTGCAAACCTACATTGATTTATGCGCTAA
CGGATTTTTACGCTTCCGCAAGGATGGTCAAGAGCGTAACTCTGACGATC
CTGTCCGGCGATTCTTAGACACGACGTTCGGATGGTCCCGTTATATGCTT
AACGACCGACCCGTGGCACGTCGACCCTGGGTGAGCgagaaaaatcaatt
tgtgattgATGATTACTTAGATGATGAGGATGATGTACACGATATCCCGG
CCGCTTTGTATCCGACTGATTTCGCAGTCAGATATTTCAGAGAGATTCAA
GAAGGATTGATGACTTGTGGTACAGACCGACAGAAATACGTTAAAGATTC
AACTATGATGTGAACAGTAGCGATGAGTCATTTAAAATCTAGANTAAAGA
TTCAACTATGATCTGAACAGTAGCGATGAGTCATTTAAAATCTAGAATAG
ccacatgtttcttttatttaatATGACATATTTAAAAACGgtagttttga
ttttgtattaaTTTCACTTATGATTCTTACATTCTTTCTTAGACAATAAA
ATCTTATAATTTCTTACCAATTAATGATTACAAAATCattctttaaaaat
caatttctccCAGACTCTTCCTCAGAAAACCTAGCCTgtacgcatcccct
ctgatatgttttgatatatggGGATGCTGATTGTATTAAACtcccg Run BLAST on NCBI protein sequence of TCONS_00065045-protein >TCONS_00065045-protein ID=TCONS_00065045-protein|Name=TCONS_00065045-protein|organism=Clytia hemisphaerica|type=polypeptide|length=230bp
MHGTQKHVQLSLVLKRQXRVWNAWNTKARATFLGLEKCAVKTAINGVIYP
IYSQEEIRALKLREQGYSQLPIPHEDVKVLNEGLTDTMKNMTLSPTMELF
TFVPNSAGNAPEAWFPILQTYIDLCANGFLRFRKDGQERNSDDPVRRFLD
TTFGWSRYMLNDRPVARRPWVSEKNQFVIDDYLDDEDDVHDIPAALYPTD
FAVRYFREIQEGLMTCGTDRQKYVKDSTMM Run BLAST on NCBI transcript from alignment at scaffold_428:365879..367903- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065045 ID=TCONS_00065045|Name=TCONS_00065045|organism=Clytia hemisphaerica|type=transcript|length=2025bp|location=Sequence derived from alignment at scaffold_428:365879..367903- (Clytia hemisphaerica)
ATTAAAGTGCATGAATTGTCTCAAGTTTAAATAACAACGTTAGCTGTCTA
AACAGCAACGGTCTATAACACTAAGACGCCTATCTATATTTAATCATGGT
TGGTAAAAATAGCTGTGTATATATATTTTGCATATATATCACGATAGCAA
TCGAGAAAGCTATCATTTGAAGACAGGATTTGCCTAGTAAGGACCAAAAA
GTTTTCAGTCATCTTCTTTTAAGGTAAGAAACTTTTCGACTTAAAGTTTT
TGTTTTTTTTGATATCATTTGCTTACTCATCAATTTTAATTCACAAGCTT
TTTCACATTGGATTGACATGGATGTGGAGCAAGATTGGTCAGAAAAAGGA
AAAGAGAAACATTTTTTGCTTAGATCAGCTAGCACAATAAAACAATACAC
TGCCCTGATATGAAATATGTGTCTGATATGAAACAGGAGCAAACCTTTGA
TTTTCTAAGTATTTTTTTAATGATTTTATATTTTCGAAATGGAATTGAAT
TTAATAGTAAGGTGATTCTTCAAGGGTCTCTTGAAGATGGATTCATAGTA
CTCGTTTGATTTTGCTCTAAATAATGATATTATTATTCCCCTCTTCTTCT
TTACTTTTCAATTAGGAACGATAATGTCTCAGCAAAAACAATCCGTTCCT
GGTAAACCTCAAATCCCGATCGCCTGGTGTTTTGGGTACGGATCGCTGGT
AGAATCCTACCATAACAAAGCGAAATATGTTGAAGTGAATATCAATTATC
GAAGAGTGTGGAATGCATGGAACACAAAAGCACGTGCAACTTTCCTTGGT
CTTGAAAAGACAANGAAGAGTGTGGAATGCATGGAACACAAAAGCACGTG
CAACTTTCCTTGGTCTTGAAAAATGTGCCGTAAAGACAGCCATTAATGGA
GTGATCTATCCCATTTATTCGCAAGAGGAGATTAGAGCATTGAAATTACG
TGAGCAAGGTGAGAATCAATAATTCTAAGTTGGATTTTAAGGGTTTTAAA
ATGCGTTAGATGATCAGGCAATATTTTTTTCCTTTCAAAAATGGAAAGAA
CGTATTGAGGATAAGTAGAACTTCACAAATCTACCTACAGAAAGATTTTA
CACGAGTGAATTTACACAGCTTCAAAAACTGTAATGAAAACTAGAGCCAA
TCATCAGAACTTTATAATAACACGACCGTAACTATTTTTTTTCAGGTTAC
TCACAACTCCCCATTCCTCACGAGGACGTCAAAGTTTTGAACGAAGGCTT
AACCGATACCATGAAAAACATGACATTGAGCCCTACAATGGAGCTGTTCA
CTTTTGTCCCTAACAGTGCTGGTAACGCGCCAGAAGCTTGGTTCCCCATC
TTGCAAACCTACATTGATTTATGCGCTAACGGATTTTTACGCTTCCGCAA
GGATGGTCAAGAGCGTAACTCTGACGATCCTGTCCGGCGATTCTTAGACA
CGACGTTCGGATGGTCCCGTTATATGCTTAACGACCGACCCGTGGCACGT
CGACCCTGGGTGAGCGAGAAAAATCAATTTGTGATTGATGATTACTTAGA
TGATGAGGATGATGTACACGATATCCCGGCCGCTTTGTATCCGACTGATT
TCGCAGTCAGATATTTCAGAGAGATTCAAGAAGGATTGATGACTTGTGGT
ACAGACCGACAGAAATACGTTAAAGATTCAACTATGATGTGAACAGTAGC
GATGAGTCATTTAAAATCTAGANTAAAGATTCAACTATGATCTGAACAGT
AGCGATGAGTCATTTAAAATCTAGAATAGCCACATGTTTCTTTTATTTAA
TATGACATATTTAAAAACGGTAGTTTTGATTTTGTATTAATTTCACTTAT
GATTCTTACATTCTTTCTTAGACAATAAAATCTTATAATTTCTTACCAAT
TAATGATTACAAAATCATTCTTTAAAAATCAATTTCTCCCAGACTCTTCC
TCAGAAAACCTAGCCTGTACGCATCCCCTCTGATATGTTTTGATATATGG
GGATGCTGATTGTATTAAACTCCCG Coding sequence (CDS) from alignment at scaffold_428:365879..367903- >TCONS_00065045 ID=TCONS_00065045|Name=TCONS_00065045|organism=Clytia hemisphaerica|type=CDS|length=1386bp|location=Sequence derived from alignment at scaffold_428:365879..367903- (Clytia hemisphaerica)
GTTACTCACAACTCCCCATTCCTCACGAGGACGTCAAAGTTTTGAACGAA
GGCTTAACCGATACCATGAAAAACATGACATTGAGCCCTACAATGGAGCT
GTTCACTTTTGTCCCTAACAGTGCTGGTAACGCGCCAGAAGCTTGGTTCC
CCATCTTGCAAACCTACATTGATTTATGCGCTAACGGATTTTTACGCTTC
CGCAAGGATGGTCAAGAGCGTAACTCTGACGATCCTGTCCGGCGATTCTT
AGACACGACGTTCGGATGGTCCCGTTATATGCTTAACGACCGACCCGTGG
CACGTCGACCCTGGGTGAGCGAGAAAAATCAATTTGTGATTGATGATTAC
TTAGATGATGAGGATGATGTACACGATATCCCGGCCGCTTTGTATCCGAC
TGATTTCGCAGTCAGATATTTCAGAGAGATTCAAGAAGGATTGATGACTT
GTGGTACAGACCGACAGAAATACGTTAAAGATTCAACTATGATGTGAATG
CATGGAACACAAAAGCACGTGCAACTTTCCTTGGTCTTGAAAAGACAANG
AAGAGTGTGGAATGCATGGAACACAAAAGCACGTGCAACTTTCCTTGGTC
TTGAAAAATGTGCCGTAAAGACAGCCATTAATGGAGTGATCTATCCCATT
TATTCGCAAGAGGAGATTAGAGCATTGAAATTACGTGAGCAAGGTTACTC
ACAACTCCCCATTCCTCACGAGGACGTCAAAGTTTTGAACGAAGGCTTAA
CCGATACCATGAAAAACATGACATTGAGCCCTACAATGGAGCTGTTCACT
TTTGTCCCTAACAGTGCTGGTAACGCGCCAGAAGCTTGGTTCCCCATCTT
GCAAACCTACATTGATTTATGCGCTAACGGATTTTTACGCTTCCGCAAGG
ATGGTCAAGAGCGTAACTCTGACGATCCTGTCCGGCGATTCTTAGACACG
ACGTTCGGATGGTCCCGTTATATGCTTAACGACCGACCCGTGGCACGTCG
ACCCTGGGTGAGCGAGAAAAATCAATTTGTGATTGATGATTACTTAGATG
ATGAGGATGATGTACACGATATCCCGGCCGCTTTGTATCCGACTGATTTC
GCAGTCAGATATTTCAGAGAGATTCAAGAAGGATTGATGACTTGTGGTAC
AGACCGACAGAAATACGTTAAAGATTCAACTATGATGTGAATGCATGGAA
CACAAAAGCACGTGCAACTTTCCTTGGTCTTGAAAAGACAANGAAGAGTG
TGGAATGCATGGAACACAAAAGCACGTGCAACTTTCCTTGGTCTTGAAAA
ATGTGCCGTAAAGACAGCCATTAATGGAGTGATCTATCCCATTTATTCGC
AAGAGGAGATTAGAGCATTGAAATTACGTGAGCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065045-exon-scaffold_428-1575043694:367681..367903 | TCONS_00065045-exon-scaffold_428-1575043694:367681..367903 | Clytia hemisphaerica | exon |
| TCONS_00065045-exon-scaffold_428-1575043694:366946..367288 | TCONS_00065045-exon-scaffold_428-1575043694:366946..367288 | Clytia hemisphaerica | exon |
| TCONS_00065045-exon-scaffold_428-1575043694:365879..366708 | TCONS_00065045-exon-scaffold_428-1575043694:365879..366708 | Clytia hemisphaerica | exon |
| TCONS_00065045-exon-scaffold_428-1510915933:367681..367903 | TCONS_00065045-exon-scaffold_428-1510915933:367681..367903 | Clytia hemisphaerica | exon |
| TCONS_00065045-exon-scaffold_428-1510915933:366946..367288 | TCONS_00065045-exon-scaffold_428-1510915933:366946..367288 | Clytia hemisphaerica | exon |
| TCONS_00065045-exon-scaffold_428-1510915933:365879..366708 | TCONS_00065045-exon-scaffold_428-1510915933:365879..366708 | Clytia hemisphaerica | exon |
| TCONS_00065045-exon-scaffold_428-1491911889:367681..367903 | TCONS_00065045-exon-scaffold_428-1491911889:367681..367903 | Clytia hemisphaerica | exon |
| TCONS_00065045-exon-scaffold_428-1491911889:366946..367288 | TCONS_00065045-exon-scaffold_428-1491911889:366946..367288 | Clytia hemisphaerica | exon |
| TCONS_00065045-exon-scaffold_428-1491911889:365879..366708 | TCONS_00065045-exon-scaffold_428-1491911889:365879..366708 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_428 | supercontig | scaffold_428:365879..367903 - |
Blast
The following BLAST results are available for this feature:
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