|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064993 ID=TCONS_00064993|Name=TCONS_00064993|organism=Clytia hemisphaerica|type=transcript|length=1931bpRun BLAST on NCBI transcript from alignment at scaffold_428:162582..196104+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064993 ID=TCONS_00064993|Name=TCONS_00064993|organism=Clytia hemisphaerica|type=transcript|length=33523bp|location=Sequence derived from alignment at scaffold_428:162582..196104+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00064993 vs. Swiss-Prot (Human)
Match: AL1A1 (Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1 PE=1 SV=2) HSP 1 Score: 543.117 bits (1398), Expect = 0.000e+0 Identity = 273/487 (56.06%), Postives = 356/487 (73.10%), Query Frame = 1
Query: 250 KVQYKKLFINNEWCDSISGKTFPTINPATGKVICHLQEGXXXXXXXXXXXXXXXFEFGSEWRSIAAAQRGALIEKLVELVQRDQEPIAELITTDMGKTITWSR-KETALSVAILAYYAGYCDKICGKTLPPSLASEDAFFAYTKQEPIGVCGAITTYNFPLLMMVMKIGPALACGCTMVMKAGEQSPLVGLHMAALIKEAGFPPGVFNLVNGYGPTAGAAISEHMDIDKVAFTGSVETGRLVMQAAAKSNLKKVSLELGGKSPLIIFPDVDLDEAVKTAHGAIFTNNGQVCSAGSRVFVHEDIYDKFVAKAVETAVKSNVTNPMEEDADNGSMVDEQQYNVVLDLIVKGVDEGAALKCGGKKIEREGFYIQPTVFADVTDEMTIAKQEIFGPVQSILKFKDTDEVIKRANATTYGLGSGVLTNDLKTAIKVVNRLQAGSVWVNCYNMIFPTTPFGGYKQSGIGRELGEYAIKEYTTVKSVVMNIA*K 1707
K+QY K+FINNEW DS+SGK FP NPAT + +C ++EGDK DVD AVKAA+ AF+ GS WR++ A++RG L+ KL +L++RD+ +A + + + GK + + + A + L Y AG+ DKI G+T+P + FF YT+ EPIGVCG I +NFPL+M++ KIGPAL+CG T+V+K EQ+PL LH+A+LIKEAGFPPGV N+V GYGPTAGAAIS HMDIDKVAFTGS E G+L+ +AA KSNLK+V+LELGGKSP I+ D DLD AV+ AH +F + GQ C A SR+FV E IYD+FV ++VE A K + NP+ G +D++QY+ +LDLI G EGA L+CGG +G+++QPTVF++VTDEM IAK+EIFGPVQ I+KFK D+VIKRAN T YGL +GV T D+ AI + + LQAG+VWVNCY ++ PFGG+K SG GRELGEY EYT VK+V + I+ K
Sbjct: 17 KIQYTKIFINNEWHDSVSGKKFPVFNPATEEELCQVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLYSNAYLNDLAGCIKTLRYCAGWADKIQGRTIP----IDGNFFTYTRHEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVLADADLDNAVEFAHHGVFYHQGQCCIAASRIFVEESIYDEFVRRSVERAKKYILGNPLTPGVTQGPQIDKEQYDKILDLIESGKKEGAKLECGGGPWGNKGYFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGVFTKDIDKAITISSALQAGTVWVNCYGVVSAQCPFGGFKMSGNGRELGEYGFHEYTEVKTVTVKISQK 499 The following BLAST results are available for this feature:
BLAST of TCONS_00064993 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.