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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064967 ID=TCONS_00064967|Name=TCONS_00064967|organism=Clytia hemisphaerica|type=transcript|length=3073bpRun BLAST on NCBI protein sequence of TCONS_00064967-protein >TCONS_00064967-protein ID=TCONS_00064967-protein|Name=TCONS_00064967-protein|organism=Clytia hemisphaerica|type=polypeptide|length=986bp MATLSSTVTPILKYWNQEEKFSSVAKARSSNDGSFLALNVENNILVVAHCRun BLAST on NCBI transcript from alignment at scaffold_427:321257..340634- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064967 ID=TCONS_00064967|Name=TCONS_00064967|organism=Clytia hemisphaerica|type=transcript|length=19378bp|location=Sequence derived from alignment at scaffold_427:321257..340634- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_427:321257..340634- >TCONS_00064967 ID=TCONS_00064967|Name=TCONS_00064967|organism=Clytia hemisphaerica|type=CDS|length=50337bp|location=Sequence derived from alignment at scaffold_427:321257..340634- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00064967 vs. Swiss-Prot (Human)
Match: SPTCS (Spatacsin OS=Homo sapiens GN=SPG11 PE=1 SV=3) HSP 1 Score: 115.161 bits (287), Expect = 1.228e-25 Identity = 140/629 (22.26%), Postives = 268/629 (42.61%), Query Frame = 3
Query: 1143 MDNTFNSLDLDTETCLCYS-NNPHFPT---------LLISIHSITIPTFNANQEQLIDTIIQYSGIDQAEVICKTNNWDQFSIPLHTLEVGLQHRQFETVAFFLKSREKVFTRYWRSVGELSSSFNAGGGGSPSKSFTSQRSYTENINSDEMVSAIEMLMKSLKSCSTGKHKQNFFESLLKLCSSYFNDLIQDGIFALEMESYHSKEDLPILRSNSTTSDPGEYGFNFLHNIPDAMKYITE-KLIMIRKYLNIKTSRKTNDEDVVDGIPK------RQKLDQEESLEEMLLSGNISSLQKTLFTKSNVCNGSFESLLDYGVEVATKCLKQNQIDKAEIVLLNLGLNPKKEIKKLYMITLERELRIKLYPYLKKEHLLTQDDQKDYEYLQELESIYVSE-DYTVVLQNHNFKWNVEE---KHXXXXXXXXXXXXSLAYSSLSLEHVSN----LDQETKRQIIVEGHYITSALDSIKKEDGDQLWKYL-LRHNHVSIMVDLLSGKCDQFISTDFPANLLSNEETLPT------------YTREVVINSLVRCGYYPKHLLVDLSLLMKYLCQNDCLFADQHPMVFYKHQLSDGERKELLKSFNQYFVKFCENNDLPLLLWKFVVHYNLDVE 2915
M T DL+T+ C+S P +++ + +++ F QE+ ++ ++ + + +C N W + SIP+H LE G+++RQ +TV FFLKS+E + FN S S F S+ N +E++ A+++L +++ + ++F E LL L S+ N+ I++ E H ++ + IL S YI E + MI+ K + ++ DV + +PK +KL EE + +L+ I Q T F + E L+ G+ + LK+N I +A +L N+G + K ++ K+ T + +R L LK+++ ++ +++ +++ ++E +Y+ + +Q+ W E+ KH + + ++ V N DQ T+ I++ + + K + LW+YL RH+ ++I++ + +F + A+L N+ L T Y R +++ L R G + L D + L + + D P+ YK + +G F+ F+ +C + L LL+ ++ Y L E
Sbjct: 446 MGYTITLWDLETQGMQCFSLGTKCIPVDSSGDQQLCFVLTENGLSLILFGLTQEEFLNRLMIHGSASTVDTLCHLNGWGRCSIPIHALEAGIENRQLDTVNFFLKSKENL--------------FNPSSKSSVSDQFDHLSSHLYLRNVEELIPALDLLCSAIRESYSEPQSKHFSEQLLNLTLSFLNNQIKELFIHTEELDEHLQKGVNILTS-----------------------YINELRTFMIK--FPWKLTDAIDEYDVHENVPKVKESNIWKKLSFEEVIASAILNNKIPEAQ-TFFRIDSHSAQKLEELIGIGLNLVFDNLKKNNIKEASELLKNMGFDVKGQLLKICFYTTNKNIRDFLVEILKEKNYFSEKEKRTIDFVHQVEKLYLGHFQENMQIQSFPRYWIKEQDFFKHKSVLDSFLKYDCKDEFNKQDHRIVLNWALWWDQLTQESILLP----RISPEEYKSYSPEALWRYLTARHDWLNIILWI-----GEFQTQHSYASLQQNKWPLLTVDVINQNTSCNNYMRNEILDKLARNGVFLASELEDFECFLLRLSRIGGVIQDTLPVQNYKTK--EG------WDFHSQFILYCLEHSLQHLLYVYLDCYKLSPE 1017 The following BLAST results are available for this feature:
BLAST of TCONS_00064967 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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