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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064860 ID=TCONS_00064860|Name=TCONS_00064860|organism=Clytia hemisphaerica|type=transcript|length=1804bp
caaggTTTCAGTCAATTTGTTGTTTATATGATGTTTCAGATTTCTTCTGA
ATAGAAAACACTAGTTGGATTACGTACTTACGTGTAcaaactaaattttt
tgaatgttaATGTCAACATGGCTTTTACATCTTACTTTAACATGACACAA
TGTTTATAAATTTATAGAGCGTGTAAAAGTGAAAGTTATTGATTAGTCGA
AGTAATTTTTAAAGTTGGAACTTTCTTGCTGTGATGACAAACTGAACAAC
CTTGCATGAAATAAATTATTATTACAAGTTTTTGCTTTTACTGTAACAGA
GaatataaaatagaaatacaaagCTTCGGTTGATTTTGATGGAAAAATGT
TACGAAGGTTGAGAAGTTTTTCGACGCCATATTTTTCAGCCATCCCTGAA
GATGAAATTATAGATGATGAAAttaataacaataacaataatattGAAAA
CTTTGAGCAAAAGAGATTCAACAAAAACACTCCTTCATGCGAACCGAAGG
ACGCTTTATCGTGGAACGGGAAAACGAAAGACGGAACGCGAAATTTCTCG
ACGGATGACGGATACGTTGACGTCGATATTCCATCAGATGACGAATATGA
GAGCGAAAATGAACTGAATTTCTCGTTAATCGACCCGAATATATTACGAG
CGAGAATTATTCGTCATTTACCGAGTGAAGTAACGACAAAGTACGGTTCA
CCGATCGTTTTAACTTGTTTAACGACTGTTTTATTTCCCGTTGATATCGA
ATGGACTCTAAACGGGACCATTATTGAACCGACGATCGATGGTCGGATAT
ATTTTTCCGACGACCGACGACAATtattcattttgtatttaaCGACTGAT
GAACAAGGAACAATAGAAATGGTCGCTAGAAATCGTTTCGGAAGCGAGAA
GTCAATTTGTCAATTGAAAGTGCAGAACAGGACTAGAGCGGTCACTGAAC
CTCTATTAAGCCTTCCGAACACTCTGGAACTGAGATgatcattttattat
ttaacATACAAACCTTTTTGTCTTTTATCGTTAGGTTTCCAAGGCAAAGT
TTCCTAAATTTAGATATGGTAATTCCCTTACTAAATCAAACACATCCATC
ATTAAGTATTCTACTGGTGAAAAGGAACTGGGTTTGAGATTACCAGGGTT
TGAGATATCAAAAGTCTGAATATCATTTTCTTGATGCGCTAACTGATACA
AGGCTTTGGCATTATCACTCAATTTCATGGTGCTGCATTCAATTCATCTT
GAAGCCAGTCTCTCTCGACGAGAGAATGTTTTATAGCAAGTGAGTTTGTT
TGAATTTCTCCGCTCTCTGTCTGATATAGTTTTAATTTCTTTACTTTCCA
ACTCAACCTTAAATCCTAAGGTGTTGAGCAACCAAACAACCTCTAAACTT
ATTAGGACTGCAATTTGAAAATAAGGTTCAAACCAAGGTTAACATAAGTA
TACATCAGAGCTGTGTTCGTTTTCTAAAAGTAACAACCTCctgaattttt
aatttattttttataaatttgtacATAATATCACTAatgtatctattttt
tttttaatttactaAAACTGAAAGTTAAATGATCTTTAAAGAACTGGAAA
AATTTCTCAATGTGACATGACACCTCTGTCCCAAAGGCCCAATGGAACCT
TTTCcctcaatggggatgaaattttgaaatcccaatggggataaaaattc
tactGATTGAAGTCAAAAACTCTGGTGTCAATGGCTTTGGAGTACACAAT
TCTTCCTTCCTATTTAAAATGCGTCGTGGGTAAAATCATAAAGCACCAAA
TTTC Run BLAST on NCBI transcript from alignment at scaffold_425:372737..377144+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064860 ID=TCONS_00064860|Name=TCONS_00064860|organism=Clytia hemisphaerica|type=transcript|length=4408bp|location=Sequence derived from alignment at scaffold_425:372737..377144+ (Clytia hemisphaerica)
caaggTTTCAGTCAATTTGTTGTTTATATGATGTTTCAGATTTCTTCTGA
ATAGAAAACACTAGTTGGATTACGTACTTACGTGTAcaaactaaattttt
tgaatgttaATGTCAACATGGCTTTTACATCTTACTTTAACATGACACAA
TGTTTATAAATTTATAGAGCGTGTAAAAGTGAAAGTTATTGATTAGTCGA
AGTAATTTTTAAAGTTGGAACTTTCTTGCTGTGATGACAAACTGAACAAC
CTTGCATGAAATAAATTATTATTACAAGTTTTTGCTTTTACTGTAACAGA
GaatataaaatagaaatacaaagCTTCGGTTGATTTTGATGGAAAAATGT
TACGAAGGTTGAGAAGTTTTTCGACGCCATATTTTTCAGCCATCCCTGAA
GATGAAATTATAGATGATGAAAttaataacaataacaataatattGAAAA
CTTTGAGCAAAAGAGATTCAACAAAAACACTCCTTGTAAGTCCTAAGTAC
CTCATATGTTCCTCATAAGGTAGTCAAATCTGCCCACACTTAAGATATTT
CATAAATACACCCCTTcttacagacccggtgggattatATCagtcagtgg
gggtaaaaatcattgaccaaaactcgatggggattgatagtGTCCCATGC
TTCTTATGGCTGGGGACTTGGCTTCGATTGTTTTCTAGTctgaaaattca
gtggggatggaaaaaatggtaaaatattttgcagtgcggatttgcttatc
tgatcaTTTTCAGctgggacaaaaattagagtaacATTTTGAAAGTGCTC
TCATCATTTGAAAACCTTCAAAGTCTAGTCTATCATGCTAGATGACTAAT
TCAGACAATTCAGTAACTTAAATtagtctaatatcgacatccctcgtgta
attccaacacccttcttagagattaaaaggaaggtcggaatcactgttag
aaaaaaaaatgttttcctctCTGACCGTTGATAAGTCGATCAGCGATTCC
aacctttattttattttcagggttaaaaaagggtgtcggaattagatgag
aGATGTCGACAAAAGACCAACTTAAGGTGTAGAAAATAAGCCATAATTAA
TATTATTTACTATGGTAGTAGGGACAAATCATAGTTTATATAAACTAATA
TTATCGCGTAAAAATTATCATATTTTTAAATcacacccatattactgtat
tagaCGAATTATCAACGACTCCTTtcctccttcagtctctctccagtctC
CCTGtggtctctctccagtcctccttcagtctctctccagtcctccttca
gtctctctccagtcctccttcagtctctctccagtctCCCTGtggtctct
ctccagtcctccttcagtctctctccagtcctccttcagtctctctccag
tcctccttcagtctctctccagtcctcctttAGTCTCTCTCCGGTCCccc
ttcagtctctctccagcCTATAGTATAGTCTTATAAACGTTATATTGTTG
AATCTTTATGGCAAGCTTAATGACAGTAATCTGAGATTTATTGAAACTGT
AGACAGTCTTAAAATTCCTTTCGTTTATGTAATATGCATTATGGTAAAAG
AAAACACTCAGGTCAAGAAGGTTGAAAATAGTTTGATCTTATATATGCAT
GCATCAGTCAGAGAAAAACTTTTGGTCGTATCATAAGGACGAGTAATTGA
TCTTTCTTAACCATTTTGGAAAAACTATCCTCAAAGGCTTTTTTGAAATC
TCTCTTTCCGAATTTGAAAGAGACAAGATGCTTTCGAGcaagttttataa
aaatatcatGGCTTCGATGTCAATGCAAAGAAAATATCAGGTCATACTCG
AGATAGGTAAGTATTGAATCCAGCTTTATTCAACAATTTGGCTGTGTCat
caattttgcaattttggagGAGGGTCAGACATCGTAATAATGGCGTAAAA
TGACCAGCTTAGTAGTTGATTTTTTGACTTAATTTGTGCAATTAGCGTTT
TGATTACTCTTGATTGCCATAGTTAAATGGCAATGAAACATCCGTTTTCT
TTGCGAGAACATCCGAAATTTTAAAGCCTTTGgttgctcttaactttttg
agttttaagcttaaaaatgttcttaacatgttcttgtttTCACCATTCTG
TAAGTATTTGCCATTTTCCTAAGagattgggtgttttagagtccacagaG
AAAGCTTATATTATATTCATgtgtagtttgttcttgtatATTACCATGGT
TAAACGACGATAAAACATCCGATAAGTTTTTACGTCACAAAGAATAAAAA
TCGTAGTTTGAATTTGTTACATGGTTGGCAGGTGGTGAACTTCTGAGAGA
CATCGTTGATTCCTGCCTCTATAGTCTCTTTGAGATCCCTTATCATGTTG
GCAAGGGCGACTATAGGAATGAATATAATATTCTTTATAAGAAGTCTGAG
AAAAACTTGTTGGTTGCGTGTTTAAAATGGTATACTTTCGAGCCAAATTC
TAAAGTTTAATggattaaaaagaaaggttggTGATTTCTTGCACTttata
ttttgaagatttgtcTATTCAAGAAACCCGTTGTGTTGTTTATAAGAATA
GTTAGAAATATTGTAAACAAACAGCCAGTTGAATTACATAAGATTGACAG
GTTGATGACAAGGCCCTTCCATTATTCATTCAAATAGATTTTGTTGTATA
TTGGATACAGTAACCTTGGTTTTctctccatcgcagtgttcATTCTATTT
AGTTTGCCCTGGAGAGCTTTGTTGGAGAGATTACAGAAACTACGATGGAG
CTATGTGGTATAATTAGGTTATAAGTTGCgaattttatttacttttccgT
CATTTATCGTGTGATCAAAGGCTTTAATTTGTTTTCTTAATCTGGGACTT
TTTGACACAAGACCTTACTTGCAGTACTAGAGTGGTATTGGTGCGTCTGA
TTAACTAAAGTCAGAAAAAGTGATCCCAGCTAACTTCGAGAGCAGAAAAT
TTGTGAAGAAGGACTACATAAATAAGAAGAAATGGGGAGAAGTTTacaac
aacagaaattcaaCCATTTCGTTTCTCGTTTTCTTTCAGCATGCGAACCG
AAGGACGCTTTATCGTGGAACGGGAAAACGAAAGACGGAACGCGAAATTT
CTCGACGGATGACGGATACGTTGACGTCGATATTCCATCAGATGACGAAT
ATGAGAGCGAAAATGAACTGAATTTCTCGTTAATCGACCCGAATATATTA
CGAGCGAGAATTATTCGTCATTTACCGAGTGAAGTAACGACAAAGTACGG
TTCACCGATCGTTTTAACTTGTTTAACGACTGTTTTATTTCCCGTTGATA
TCGAATGGACTCTAAACGGGACCATTATTGAACCGACGATCGATGGTCGG
ATATATTTTTCCGACGACCGACGACAATtattcattttgtatttaaCGAC
TGATGAACAAGGAACAATAGAAATGGTCGCTAGAAATCGTTTCGGAAGCG
AGAAGTCAATTTGTCAATTGAAAGTGCAGAACAGGACTAGAGCGGTCACT
GAACCTCTATTAAGCCTTCCGAACACTCTGGAACTGAGATgatcatttta
ttatttaacATACAAACCTTTTTGTCTTTTATCGTTAGGTTTCCAAGGCA
AAGTTTCCTAAATTTAGATATGGTAATTCCCTTACTAAATCAAACACATC
CATCATTAAGTATTCTACTGGTGAAAAGGAACTGGGTTTGAGATTACCAG
GGTTTGAGATATCAAAAGTCTGAATATCATTTTCTTGATGCGCTAACTGA
TACAAGGCTTTGGCATTATCACTCAATTTCATGGTGCTGCATTCAATTCA
TCTTGAAGCCAGTCTCTCTCGACGAGAGAATGTTTTATAGCAAGTGAGTT
TGTTTGAATTTCTCCGCTCTCTGTCTGATATAGTTTTAATTTCTTTACTT
TCCAACTCAACCTTAAATCCTAAGGTGTTGAGCAACCAAACAACCTCTAA
ACTTATTAGGACTGCAATTTGAAAATAAGGTTCAAACCAAGGTTAACATA
AGTATACATCAGAGCTGTGTTCGTTTTCTAAAAGTAACAACCTCctgaat
ttttaatttattttttataaatttgtacATAATATCACTAatgtatctat
tttttttttaatttactaAAACTGAAAGTTAAATGATCTTTAAAGAACTG
GAAAAATTTCTCAATGTGACATGACACCTCTGTCCCAAAGGCCCAATGGA
ACCTTTTCcctcaatggggatgaaattttgaaatcccaatggggataaaa
attctactGATTGAAGTCAAAAACTCTGGTGTCAATGGCTTTGGAGTACA
CAATTCTTCCTTCCTATTTAAAATGCGTCGTGGGTAAAATCATAAAGCAC
CAAATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064860-exon-scaffold_425-1491911889:372737..373221 | TCONS_00064860-exon-scaffold_425-1491911889:372737..373221 | Clytia hemisphaerica | exon |
| TCONS_00064860-exon-scaffold_425-1510915933:372737..373221 | TCONS_00064860-exon-scaffold_425-1510915933:372737..373221 | Clytia hemisphaerica | exon |
| TCONS_00064860-exon-scaffold_425-1575043694:372737..373221 | TCONS_00064860-exon-scaffold_425-1575043694:372737..373221 | Clytia hemisphaerica | exon |
| TCONS_00064860-exon-scaffold_425-1491911889:375826..377144 | TCONS_00064860-exon-scaffold_425-1491911889:375826..377144 | Clytia hemisphaerica | exon |
| TCONS_00064860-exon-scaffold_425-1510915933:375826..377144 | TCONS_00064860-exon-scaffold_425-1510915933:375826..377144 | Clytia hemisphaerica | exon |
| TCONS_00064860-exon-scaffold_425-1575043694:375826..377144 | TCONS_00064860-exon-scaffold_425-1575043694:375826..377144 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_425 | supercontig | scaffold_425:372737..377144 + |
Blast
The following BLAST results are available for this feature:
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