TCONS_00064885 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064885
Unique NameTCONS_00064885
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length842

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064885 ID=TCONS_00064885|Name=TCONS_00064885|organism=Clytia hemisphaerica|type=transcript|length=842bp
TATAACATCAATTTCAACGGAACCGAAGTTTTTGTTTACTGTGACATAAC
GCAAGGTGGCTGGACGCAAATCGCAAACATTCGTCAAATCAATCAACAAA
GCTTCTCTTTATCGTCAATCCAAGTGGACACGCCAGGTGAACTTTCCGAT
CGCTTACTTTCGGGAGAAAACTATGCTCTCTCAGCTCAAGGTCTCCGAGA
TCTCGTCAACTCAACAGGAGCTAGACAACTGCGTGTTTATTGCTCCAAAC
CATCCGTTGGACGAACTTTCCACATCGAATCTCGAGATAATGCAATCGGA
GACCAAATCCTTGAATACTTTTCTGATGTTACGGCAACCGAGCTACCAGA
TGGTGCCGACTCTTTTGATACCTTACCTGGTGACACTTCCTACCTAACTT
CACATGTTCACGAGTGGCGATTTCAAAGCGGGAAATGGGGTCATGGCACC
ATTAAAACTCAGCCCatgaaattatacaaaaatctagTGTACATAAGtga
ctctaaaacaccaccCTCTTATGTTTATAAGGTGGGAATGAATTCAACTC
CGAAGTTATATTGTGACGATGATGGAACTTTGAATAGCGGAGAATGGAAA
TACTTCATTCGATGACGGATAGATTATTTGTGTAATATAGACCGCACAAC
ATATAGCTTAGtgtaaacataattttttatgacgctgagtccagtgagtC
TGagtcacagatatctgtaaagcccgaagggctagatttgcagctttgtt
caaaaagtgaagctcatctttggaaggatttcctaccagagtcacgtgac
taaaatatgcaatttcaccggtttgagagatgtgaaatagcg
Run BLAST on NCBI

transcript from alignment at scaffold_425:322652..324259-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064885 ID=TCONS_00064885|Name=TCONS_00064885|organism=Clytia hemisphaerica|type=transcript|length=1608bp|location=Sequence derived from alignment at scaffold_425:322652..324259- (Clytia hemisphaerica)
TATAACATCAATTTCAACGGAACCGAAGTTTTTGTTTACTGTGACATAAC
GCAAGGTCAAGGTTAGCTTGTTTTTTTTGTTGTGTCATTTTGCTAAACTC
TTCTTTCAAACAAATAATAACTCCAGGTGACAAATCAGTATAATAGAGAG
GGATAAGTTATGATTCAAAAAACATTCCGACAAATATTTTTCAGCATAAG
AGGGATAACTTAAAAGCTTAAGAATTGCGTTTCTTTCACAATTTTTTAAC
CCTATCGTAGGCTTTTAGGGGTGGTTCAGAACTTTAAGGAGGGGGTTCCT
GTACCACGCCTTAACTTCTGATATAGTTGGTCTTTTTGGATGAAATTTGG
TACACAATATGTAATGAACACCTCCCCCAACTTGTTAATTTTTCGATATT
TCCCACCCCCCATACCTGATTAGGACCCTTTGCTTATTAATTTTTGAAAA
TATTTTCAGTTGTCAAAAGATGAGTCCCATATTTTTCTCTGAATAAATAG
CCAAGTTCTGATTTTTGAAAGGTATTTAGAGATATAATTTCCAACCCCCG
CGGTAATTAGGTCCCCCTGTTAATTAAAATTTGAAGATTTTTCCAAACCT
CCGTTTATTTCGACCACACCGTTTGTTAGGCACCTGAGAGTACCACGACC
TGTTTTGTAAATTATATGTTATATGCATACTATAAGAGTTTGAAGACCCC
GTTTTTACATTGCAGGTTTTTAATAAAAGGATACTTCTTTTTCAGAAAAT
CCTAATCAAACTATTCAGCTTTTATTGACAACATAGTTTGATTTCAAGTA
TATTTCTAAATGTTTTAACAGGTGGCTGGACGCAAATCGCAAACATTCGT
CAAATCAATCAACAAAGCTTCTCTTTATCGTCAATCCAAGTGGACACGCC
AGGTGAACTTTCCGATCGCTTACTTTCGGGAGAAAACTATGCTCTCTCAG
CTCAAGGTCTCCGAGATCTCGTCAACTCAACAGGAGCTAGACAACTGCGT
GTTTATTGCTCCAAACCATCCGTTGGACGAACTTTCCACATCGAATCTCG
AGATAATGCAATCGGAGACCAAATCCTTGAATACTTTTCTGATGTTACGG
CAACCGAGCTACCAGATGGTGCCGACTCTTTTGATACCTTACCTGGTGAC
ACTTCCTACCTAACTTCACATGTTCACGAGTGGCGATTTCAAAGCGGGAA
ATGGGGTCATGGCACCATTAAAACTCAGCCCATGAAATTATACAAAAATC
TAGTGTACATAAGTGACTCTAAAACACCACCCTCTTATGTTTATAAGGTG
GGAATGAATTCAACTCCGAAGTTATATTGTGACGATGATGGAACTTTGAA
TAGCGGAGAATGGAAATACTTCATTCGATGACGGATAGATTATTTGTGTA
ATATAGACCGCACAACATATAGCTTAGTGTAAACATAATTTTTTATGACG
CTGAGTCCAGTGAGTCTGAGTCACAGATATCTGTAAAGCCCGAAGGGCTA
GATTTGCAGCTTTGTTCAAAAAGTGAAGCTCATCTTTGGAAGGATTTCCT
ACCAGAGTCACGTGACTAAAATATGCAATTTCACCGGTTTGAGAGATGTG
AAATAGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040691XLOC_040691Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064885-exon-scaffold_425-1575043694:324205..324259TCONS_00064885-exon-scaffold_425-1575043694:324205..324259Clytia hemisphaericaexon
TCONS_00064885-exon-scaffold_425-1575043694:322652..323438TCONS_00064885-exon-scaffold_425-1575043694:322652..323438Clytia hemisphaericaexon
TCONS_00064885-exon-scaffold_425-1510915933:324205..324259TCONS_00064885-exon-scaffold_425-1510915933:324205..324259Clytia hemisphaericaexon
TCONS_00064885-exon-scaffold_425-1510915933:322652..323438TCONS_00064885-exon-scaffold_425-1510915933:322652..323438Clytia hemisphaericaexon
TCONS_00064885-exon-scaffold_425-1491911889:324205..324259TCONS_00064885-exon-scaffold_425-1491911889:324205..324259Clytia hemisphaericaexon
TCONS_00064885-exon-scaffold_425-1491911889:322652..323438TCONS_00064885-exon-scaffold_425-1491911889:322652..323438Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_425supercontigscaffold_425:322652..324259 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.331073	0	0.126946	0	0.303997	0	0.0675979	0.290827	0.118223	0.367792	0	0	1.05456	1.72354	0.140109	0	0.688908	0.256511	3.66071	1.92239	0.0578801	0.391378	1.19548	0.775501	1.55633	0.205989	1.10625	0.505274	0.0940445	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064885 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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