TCONS_00064850 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064850
Unique NameTCONS_00064850
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length306

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064850 ID=TCONS_00064850|Name=TCONS_00064850|organism=Clytia hemisphaerica|type=transcript|length=306bp
ccTTCACCCTCCTTCTCTTTTTCACCGTCATTATCTTTATCGAGGACTCG
TTTGTCTTCGATAAACTTCGATAATTCCTCCAATCGATGTTTGTCGTCGA
CGATTTTAATCTCATTATTGACGTGATTTAGGATATCGCGACAACATCTG
GAACATTGTTCGACGGGCGAGTAATCGGGGTGTTTGGCGGGCGTTGATTT
GTTGATTTGATCGAGTAGAAGTGGGTATTTAACAAGACGTTGATGCGAGG
TAGCCATTATGTCGGAGAATTTCAAACGCCGGCAGTAATCGTTTGCCTCT
TGAcgc
Run BLAST on NCBI

transcript from alignment at scaffold_425:263505..263888+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064850 ID=TCONS_00064850|Name=TCONS_00064850|organism=Clytia hemisphaerica|type=transcript|length=384bp|location=Sequence derived from alignment at scaffold_425:263505..263888+ (Clytia hemisphaerica)
ccTTCACCCTCCTTCTCTTTTTCACCGTCATTATCTTTATCGAGGACTCG
TTTGTCTTCGATAAACTTCGATAATTCCTCCAATCGATGTTTGTCGTCGA
CGATTTTAATCTCATTATTGACGTGATTTAGGATATCGCGACAACATCTG
GCACATTGTTCGACGGGCGAGTAATCGGGATGTTTGGCGGGCGTTGATTT
GTTGATTTGANTATCGCGACAACATCTGGAACATTGTTCGACGGGCGAGT
AATCGGGGTGTTTGGCGGGCGTTGATTTGTTGATTTGATCGAGTAGAAGT
GGGTATTTAACAAGACGTTGATGCGAGGTAGCCATTATGTCGGAGAATTT
CAAACGCCGGCAGTAATCGTTTGCCTCTTGAcgc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040676XLOC_040676Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064850-exon-scaffold_425-1491911889:263505..263649TCONS_00064850-exon-scaffold_425-1491911889:263505..263649Clytia hemisphaericaexon
TCONS_00064850-exon-scaffold_425-1510915933:263505..263649TCONS_00064850-exon-scaffold_425-1510915933:263505..263649Clytia hemisphaericaexon
TCONS_00064850-exon-scaffold_425-1575043694:263505..263649TCONS_00064850-exon-scaffold_425-1575043694:263505..263649Clytia hemisphaericaexon
TCONS_00064850-exon-scaffold_425-1491911889:263728..263888TCONS_00064850-exon-scaffold_425-1491911889:263728..263888Clytia hemisphaericaexon
TCONS_00064850-exon-scaffold_425-1510915933:263728..263888TCONS_00064850-exon-scaffold_425-1510915933:263728..263888Clytia hemisphaericaexon
TCONS_00064850-exon-scaffold_425-1575043694:263728..263888TCONS_00064850-exon-scaffold_425-1575043694:263728..263888Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_425supercontigscaffold_425:263505..263888 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.1556	12.379	4.18602	6.35883	20.2121	22.8794	17.4419	13.9652	6.34211	22.3183	8.00593	3.90523	19.6948	22.5036	3.39072	16.9138	22.0751	15.9911	23.6506	19.0496	13.5971	11.5293	15.0996	15.1334	14.9851	19.5584	3.59248	6.81304	13.7432	8.74331
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000219DH-domain
Vocabulary: Biological Process
TermDefinition
GO:0035023regulation of Rho protein signal transduction
Vocabulary: Molecular Function
TermDefinition
GO:0005089Rho guanyl-nucleotide exchange factor activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0035023 regulation of Rho protein signal transduction
molecular_function GO:0005089 Rho guanyl-nucleotide exchange factor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064850 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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