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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064827 ID=TCONS_00064827|Name=TCONS_00064827|organism=Clytia hemisphaerica|type=transcript|length=3508bpRun BLAST on NCBI transcript from alignment at scaffold_425:4558..19343+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064827 ID=TCONS_00064827|Name=TCONS_00064827|organism=Clytia hemisphaerica|type=transcript|length=14786bp|location=Sequence derived from alignment at scaffold_425:4558..19343+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00064827 vs. Swiss-Prot (Human)
Match: INT4 (Integrator complex subunit 4 OS=Homo sapiens GN=INTS4 PE=1 SV=2) HSP 1 Score: 448.743 bits (1153), Expect = 9.122e-139 Identity = 282/830 (33.98%), Postives = 453/830 (54.58%), Query Frame = 3
Query: 297 SEECEQVIRHLKDLIRKESDHLVRAKAIELIKEICYLPSSNKMQCVEEIFDCLHKESNHFVLSQIFNSLSRAAILIPNKADIIQKILKASIKKLDDSHHDVRCACLNLIGQLCPSEPIRMSSTRTV---DPMELFSEFSADQDPRVRTVVYQSLLTLHQRNRPLDISVYEKATSALTDDYENVRLAAIKLVWVFSHTTPNSMMKT-ESGEEIRLLDDAFIKICNMSNDISMKVRAKAVGLLGSLHDVSLHLLQQTLDKKLMSHGKKTKSFNQRQLERFRXXXXXXXXXAWATGTKWASDDPSILKKEIKEDEVKLMNSGSCGVFVKSLEDEFMEVRTAGVDSLCELANQNPSFARMSTDFLVDMFNDEIESVRLNSVNSLMKLHKYVDLREDQLDTILECLNDFNQVVRNAVRDLLAQCQMATQSCLYATVLALLTNLKKYANDRESIWRCMKSLGERHPYFVSSLVPQIFITHPFYAIPEPNIDDPAHIAVSALVFNATVHSPPILSLLPPFAKQHYDYLRESLPEFIPALXXXXXXXXXXXXXXXXXXXLE--NRFFQNTIQRLYNVLEKPSNRSMSEINSCLSDLNGLKKLHRSIRPSAEFLALFFKSYQMLRKCQNERTWNL--PPALTASTECSSLQNDVENLLEMSYNMEYSFPGITSKSTCVLRMXXXXXXXXXXXXXXXXXPKAQQTQKNN--FKLWKIFFKRLNNFKEHLTTSSSDAHAYQSVIELQNSLEQNLSDI---------TTLLQLVQNFFVKQT-ITLDMNNRLRQCSATILEPRNNVDNPFRFSAGLVLAVDFVSFIHNIDDVANVYIKVRIL 2726
+E E V+R L + KE+D VR K L+ + + +++ + L E +H VL+Q+ ++L +P I +++ + K L D+ H VR CL L+G L E + D ++ ++ +DQDPRVRT +++L LH+R L ++Y +A L+DDYE VR AA++L+WV S P S++ S EEIRL+DDAF KIC+M +D S VR +A LLGS+ VS H L+QTLDKKLMS ++ ++ ++R E + G +++G KW D P K+E+ V L+ SG+CG FV LEDE EVR A V++LC LA +PSFA DFLVDMFNDEIE VRL S++++ K+ + LREDQLDT+L L D ++ +R A+ +LL ++T+ ++ ++ LL NL KY DR+SIW+C+K LG RHP V LVP++ THPF+ EP++DDPA+IAV L+FNA P + +L +HY YLR+SL +PAL S + +F Q +++R+Y++ + + + DL L +L + A+F A + + +L K E+ WN+ P L S S+ + ++E +Y ME+ + G+ +K ++ +R+ A +L +++ A+ T+ + F + + F + ++ F+ + + LQ+S L D+ +++++Q + + L + ++ + SATI+EP DNP RF++GLV+A+D + + ++ D N +KV++L
Sbjct: 66 AESVEGVVRILLEHYYKENDPSVRLKIASLLGLLSKTAGFSPDCIMDDAINILQNEKSHQVLAQLLDTLLAIGTKLPENQAIQMRLVDVACKHLTDTSHGVRNKCLQLLGNLGSLEKSVTKDAEGLAARDVQKIIGDYFSDQDPRVRTAAIKAMLQLHERGLKLHQTIYNQACKLLSDDYEQVRSAAVQLIWVVSQLYPESIVPIPSSNEEIRLVDDAFGKICHMVSDGSWVVRVQAAKLLGSMEQVSSHFLEQTLDKKLMSDLRRKRTAHERAKELY-------SSGEFSSGRKWGDDAP---KEEVDTGAVNLIESGACGAFVHGLEDEMYEVRIAAVEALCMLAQSSPSFAEKCLDFLVDMFNDEIEEVRLQSIHTMRKISNNITLREDQLDTVLAVLEDSSRDIREALHELLCCTNVSTKEGIHLALVELLKNLTKYPTDRDSIWKCLKFLGSRHPTLVLPLVPELLSTHPFFDTAEPDMDDPAYIAVLVLIFNAAKTCPTMPALFSDHTFRHYAYLRDSLSHLVPALRLPGRKLVSSAVSPSIIPQEDPSQQFLQQSLERVYSLQHLDPQGAQELLEFTIRDLQRLGELQSELAGVADFSATYLRCQLLLIKALQEKLWNVAAPLYLKQSDLASAA---AKQIMEETYKMEFMYSGVENKQVVIIHHMRLQAKALQLIVT------ARTTRGLDPLFGMCEKFLQEVDFFQRYFIA---------DLPHLQDSFVDKLLDLMPRLMTSKPAEVVKILQTMLRQSAFLHLPLPEQIHKASATIIEPAGESDNPLRFTSGLVVALDVDATLEHVQDPQNT-VKVQVL 866 The following BLAST results are available for this feature:
BLAST of TCONS_00064827 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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