TCONS_00064634 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064634
Unique NameTCONS_00064634
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length246

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064634 ID=TCONS_00064634|Name=TCONS_00064634|organism=Clytia hemisphaerica|type=transcript|length=246bp
TAGGACCGCAGTTCAAAAGCTTATATCTCTTTAAGTATACCTTTTACAGT
TACGGGACCAGCATGGGTCCGAAAACGGACGTTTTAACTTAACCACAGGT
ATCAGTGTAGGGCCTAGTAGACATTTACGAGTCCTTAATTTTCAAAACTA
GTCAGGGGTGTAAAGATGGTGcaaaaacagctattttttgtaccatttaa
atgacagtgtccatagcagttatttgagaggtcggatttaggcagg
Run BLAST on NCBI

transcript from alignment at scaffold_42:18717..18962

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064634 ID=TCONS_00064634|Name=TCONS_00064634|organism=Clytia hemisphaerica|type=transcript|length=246bp|location=Sequence derived from alignment at scaffold_42:18717..18962 (Clytia hemisphaerica)
cctgcctaaatccgacctctcaaataactgctatggacactgtcatttaa
atggtacaaaaaatagctgtttttgCACCATCTTTACACCCCTGACTAGT
TTTGAAAATTAAGGACTCGTAAATGTCTACTAGGCCCTACACTGATACCT
GTGGTTAAGTTAAAACGTCCGTTTTCGGACCCATGCTGGTCCCGTAACTG
TAAAAGGTATACTTAAAGAGATATAAGCTTTTGAACTGCGGTCCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040542XLOC_040542Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064634-exon-scaffold_42-1491911889:18717..18962TCONS_00064634-exon-scaffold_42-1491911889:18717..18962Clytia hemisphaericaexon
TCONS_00064634-exon-scaffold_42-1510915933:18717..18962TCONS_00064634-exon-scaffold_42-1510915933:18717..18962Clytia hemisphaericaexon
TCONS_00064634-exon-scaffold_42-1575043694:18717..18962TCONS_00064634-exon-scaffold_42-1575043694:18717..18962Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_42supercontigscaffold_42:18717..18962 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.63385	1.59326	3.29135	10.7043	16.3915	11.0252	6.08475	12.6475	7.715	5.63537	0.827655	4.55697	4.60031	2.86161	3.04242	3.57812	7.84544	0	1.2827	4.09246	3.1594	3.74067	1.76086	0	2.21633	6.11644	2.24034	4.34029	3.6269	0.923808
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064634 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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