|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064592 ID=TCONS_00064592|Name=TCONS_00064592|organism=Clytia hemisphaerica|type=transcript|length=2954bpRun BLAST on NCBI transcript from alignment at scaffold_419:507690..522182- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064592 ID=TCONS_00064592|Name=TCONS_00064592|organism=Clytia hemisphaerica|type=transcript|length=14493bp|location=Sequence derived from alignment at scaffold_419:507690..522182- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00064592 vs. Swiss-Prot (Human)
Match: HMCN2 (Hemicentin-2 OS=Homo sapiens GN=HMCN2 PE=2 SV=3) HSP 1 Score: 128.257 bits (321), Expect = 1.214e-29 Identity = 188/798 (23.56%), Postives = 293/798 (36.72%), Query Frame = 2
Query: 434 SNNVFTPNVKAVYQGRVTLT---FVEDEKAVVLEMNDLKYEDEGAIDCTVTRTDLQKFLGSSMLKVITPQNISIT---PLSNEASEFSPFAIKCFVQSRPVSNITWFKAANQIEADSGEYNISDVITTGDISTIESTLSVLEARASDTSQYKCVATTPDGRNLEAASDLIIQYGPNIVSFP----ADPYGTVEG--AQNVRFECVVHSNPVSTIDWFINEKLYNQSSPDLYDVSNETTINSQTNDAVVSSSFHVKNVRKEDIARYTCQATNNVIGRGELKNNQSAMLIISHKPYFLSNPPPLLAVRNGTQ--------AVLNCSVQGFPSP-LAWWSSNITLDEERVTNTTVVEKATGKTIVTAVLTISDLREDDFGLFTCHGMEGNETVQIQTVLKVAYVPKMENFKSTLDIEEGKMRYLECAAIGYPPPQIKWFFAHDQI-NFVEITDKAVATAHLHDGYSSHVRSVLDYGDKNISRVDAGSYNCQVSNSEASLDNILNVTVQFAPELSM--SGVEEVKMNDPNTFQCIVESNPQSDVKWFKNDEEISAFPKTVPINNLTLVRKDETFKIQSAQPDDMAVYKCEAINEVLGVKRKVVQSIDFKVRYAPIITATPLEQGVAAKTKLVLSCAAHAYPAIEEYMWRYNGNAIQ-----DFNQEEYVIQ--SVDEQSEGIYQCQPMNAEGLGGRIVHNITVIVKPVF---TTFPTCVHHEQQDILQCHFEGSGIPDPTHHWRVFGQ---------NDVIANQSALNISLSK-DTEGNYSCVLSNSRATIEEVLNIEDFVP 2695
+ V TPN+ G + T V L++ + D G C + + ++ L V P I P +A P A++C + P ++W + E N S + T G + +ES + + Y CVA++P G + ++QY + P A+ G V Q + C +PV TI W N + + +L V + SQ ++ H+ +V + + CQATN G A + +S + P +++ G L C G P+P L WW + L +EK DLR++ G++TC + + LKV P +E + E LEC A G PPP + WF H + +++ +T DG VL +S DAGSY C SN S + + V P +++ S V +N P C P + W K+ +S P P L + + SA+ D Y C A++ V G R Q + +V P I L V A + L C +HA P W+ +G ++ + ++ ++Q D G Y C+ +N G + +N+ V V PVF + V L C E G+P P WR GQ V A L + ++ EG Y+C SN + L +E VP
Sbjct: 1555 ARGVPTPNITWFKDGALLPTSTKVVYTRGGRQLQLGRAQSSDAGVYTCKASNA-VGAAEKATRLDVYVPPTIEGAGGRPYVVKAVAGRPVALECVARGHPSPTLSWHHEGLPV----AESNESRLETDGSVLRLES------PGEASSGLYSCVASSPAG-------EAVLQYSVEVQVPPQLLVAEGLGQVTTIVGQPLELPCQASGSPVPTIQWLQN----GRPAEELAGVQ----VASQ------GTTLHIDHVELDHSGLFACQATNEAGTAG-------AEVEVSVHEF------PSVSIIGGENITAPFLQPVTLQCIGDGVPTPSLRWWKDGVAL--AAFGGNLQIEKV-------------DLRDE--GIYTCAATNLAGESKREVALKVLVPPNIEPGPVNKAVLENASVTLECLASGVPPPDVSWFKGHQPVSSWMGVTVSV-------DG------RVLRIEQAQLS--DAGSYRCVASNVAGSTELRYGLRVNVPPRITLPPSLPGPVLVNTPVRLTCNATGAPSPTLMWLKDGNPVS--PAGTP--GLQVFPGGRVLTLASARASDSGRYSCVAVSAV-GEDR---QDVVLQVHMPPSILGEELNVSVVANESVALECQSHAMPPPVLSWWK-DGRPLEPRPGVHLSADKALLQVDRADVWDAGHYTCEALNQAGHSEK-HYNLNVWVAPVFPLRESHTLTVREGHPTRLSC--ECRGVPFPKISWRKDGQPLPGEGAGLQHVSAVGRLLYLGQAQLAQEGTYTCECSNVVGNSSQDLQLEVHVP 2263 HSP 2 Score: 105.531 bits (262), Expect = 9.304e-23 Identity = 135/613 (22.02%), Postives = 224/613 (36.54%), Query Frame = 2
Query: 614 LKVITPQNISITPLSNEASEFSPFAIKCFVQSRPVSNITWFKAANQIEADSGEYNISDVITTGDISTIESTLSVLEARASDTSQYKCVATTPDGRNLEAASDLIIQYGPNIVSFPADPYGTVEGAQNVRFECVVHSNPVSTIDWFINEKLYNQSSPDLYDVSNETTINSQTNDAVVSSSFHVKNVRKEDIARYTCQATNNV---IGRGELKNNQSAMLIISHKPYFLSNPPPLLAVRNGTQAVLNCSVQGFPSPLAWWSSNITLDEERVTNTTVVEKATGKTIV--TAVLTISDLREDDFGLFTCHGMEGNETVQIQTVLKVAYVPKMENFKSTLDIEEGKMRYLECAAIGYPPPQIKWFFAHDQINFVEITDKAVATA-HLHDGYSSHVRSVLDYGDKNISRVDAGSYNCQVSNSEASLDNILNVTVQFAPELSMSGVEEVKMNDPNTFQ--CIVESNPQSDVKWFKNDEEISAFPKTVPINNLTLVRKDETFKIQSAQPDDMAVYKCEAINEVLGVKRKVVQSIDFKVRYAPIITATPLEQGVAAKTKLVLSCAA--HAYPAIEEYMWRYNGNAIQDFNQEEYV------IQSVDEQSEGIYQCQPMNAEG 2404
+ V P I+ + +P + C P ++W KA Q+ A Y +S L + +A +Y C A G + L +Q P + P+ E + V C P TI W + +V+ T +++Q + + + ED Y C A N+ +G+ L + P + N P L+ G+ A L C +G P P NIT D++ V A GK + + L + +L D G +TC + + L + +P + G +L CAA G P P+I W + D+ V DG S+ R+ +SR D+G+Y C N + V V+ AP L + + Q C+V +P D+ W K+ + ++L ++ + I+ + DD Y+C A NE +GV +KVV + ++ AP+ P + V + + L C A P IE W G ++ + + +++V+ G Y C N G
Sbjct: 3845 VTVHVPPTIADDQTDFTVTMMAPVVLTCHSTGIPAPTVSWSKAGAQLGARGSGYRVSP----------SGALEIGQALPIHAGRYTCSARNSAGVAHKHVF-LTVQASPVVKPLPSVVRAVAE--EEVLLPCEASGIPRPTITW----------QKEGLNVA--TGVSTQV---LPGGQLRIAHASPEDAGNYLCIAKNSAGSAMGKTRL---------VVQVPPVIENGLPDLSTTEGSHAFLPCKARGSPEP------NITWDKD----GQPVSGAEGKFTIQPSGELLVKNLEGQDAGTYTCTAENAVGRARRRVHLTILVLPVFTTLPGDRSLRLGDRLWLRCAARGSPTPRIGW----------TVNDRPVTEGVSEQDGGSTLQRAA-------VSREDSGTYVCWAENRVGRTQAVSFVHVKEAPVLQGEAFSYLVEPVGGSIQLDCVVRGDPVPDIHWIKDGLPLRG-------SHLRHQLQNGSLTIRRTERDDAGRYQCLAENE-MGVAKKVVILV---LQSAPVFQVEPQDMTVRSGDDVALRCQATGEPTPTIE---WLQAGQPLRASRRLRTLPDGSLWLENVETGDAGTYDCVAHNLLG 4379 HSP 3 Score: 103.99 bits (258), Expect = 2.994e-22 Identity = 176/747 (23.56%), Postives = 272/747 (36.41%), Query Frame = 2
Query: 521 LEMNDLKYEDEGAIDCTVTRTDLQKFLGSS----MLKVITPQNISITPLSNEASEFSPFAIKCFVQSRPVSNITWFKAANQIEADSGEYNISDVITTGDISTIESTLSVLEARASDTSQYKCVATTPDGRNLEAASDLIIQYGPNIVSFPADPYGTVEGAQNVRFECVVHSNPVSTIDWFINEKLYNQSSPDLYDVSNETTINSQTNDAVVSSSFHVKNVRKEDIARYTCQATNNVIGRGELKNNQSAMLIISHKPYFLSNPPPLLAVRNGTQAVLNCSVQGFPSP-LAWWSSNITLDEERVTNTTVVEKATGKTIVTAVLTISDLREDDFGLFTCHGMEGNETVQIQTVLKVAYVPKMENFKS-TLDIEEGKMRYLECAAIGYPPPQIKWFFAHDQINFVEITDKAVATAHLHDGYSSHVRSVLDYGDKNISRVDAGSYNCQVSNSEASLDNILNVTVQFAPELSMSGVEE------VKMNDPNTFQCIVESNPQSDVKWFKNDEEISAFPKTVPINNLTLVRKDETFKIQSAQPDDMAVYKCEAINEVLGVKRKVVQSIDFKVRYAP--IITATPLEQGVAA-KTKLVLSCAAHAYPAIEEYMWRYNGNAIQDFNQEEYVI--------QSVDEQSEGIYQCQPMNAEGLGGRIVHNITVIVKPVFTTFP----TCVHHEQQDILQCHFEGSGIPDPTHHWRVFGQNDVIANQSALNIS----------LSKDTEGNYSCVLSNS 2650
L++ + DEG C T G S LKV+ P NI P++ E + ++C P +++WFK + + G +T +S L + +A+ SD Y+CVA+ G + E L + P I P+ P G V VR C P T+ W K N SP + + V++ + + R D RY+C A + V GE + Q +L + P L + V N + A L C P P L+WW L E R +K A+L + D G +TC + + L V P +S TL + EG L C G P P+I W + + + + H+ S V +L G +++ G+Y C+ SN + L + V P++ +G E V + T +C P V W ++ + + A L L + ++ ++ AQ Y C A N +RK + V P I PL AA + L L C A P W + G ++ Y++ EQ G+Y C N G R ++ V+V P V Q L C+ G P P W F +A A +IS + + G+YSC+ +N+
Sbjct: 1858 LQIEKVDLRDEGIYTCAAT-----NLAGESKREVALKVLVPPNIEPGPVNKAVLENASVTLECLASGVPPPDVSWFKGHQPVSSWMG-------VT---VSVDGRVLRIEQAQLSDAGSYRCVASNVAG-STELRYGLRVNVPPRITLPPSLP-GPVLVNTPVRLTCNATGAPSPTLMWL---KDGNPVSP-----AGTPGLQVFPGGRVLT----LASARASDSGRYSCVAVSAV---GE--DRQDVVLQVHMPPSILGEELNVSVVANESVA-LECQSHAMPPPVLSWWKDGRPL-EPRPGVHLSADK--------ALLQVDRADVWDAGHYTCEALNQAGHSEKHYNLNVWVAPVFPLRESHTLTVREGHPTRLSCECRGVPFPKISW-----RKDGQPLPGEGAGLQHV-----SAVGRLLYLGQAQLAQ--EGTYTCECSNVVGNSSQDLQLEVHVPPQI--AGPREPPTQVSVVQDGVATLECNATGKPPPTVTWERDGQPVGAEL------GLQLQNQGQSLHVERAQAAHTGRYSCVAENLAGRAERK----FELSVLVPPELIGDLDPLTNITAALHSPLTLLCEAMGIPP-PAIRW-FRGEEPVSPGEDTYLLAGGWMLKMTQTQEQDSGLYSCLASNEAG-EARRNFSVEVLVPPSIENEDLEEVIKVLDGQTAHLMCNVTGH--PQPKLTW--FKDGRPLARGDAHHISPDGVLLQVLQANLSSAGHYSCIAANA 2529 HSP 4 Score: 101.293 bits (251), Expect = 1.758e-21 Identity = 147/658 (22.34%), Postives = 244/658 (37.08%), Query Frame = 2
Query: 548 DEGAIDCTVT------RTDLQKFLGSSMLKVITPQNISITPLSNEASEFSPFAIKCFVQSRPVSNITWFKAANQIEADSGEYNISDVITTGDISTIESTLSVLEARASDTSQYKCVATTPDGRNLEAASDLIIQYGPNIVSFPADPYGTVEGAQNVRFECVVHSNPVSTIDWFINEKLYNQSSPDLYDVSNETTINSQTNDAVVSSSFHVKNVRKEDIARYTCQATNNVIGRGELKNNQSAMLIISHKPYFLSNPPPLLAVRNGTQAVLNCSVQGFPSP-LAWWSSNITLDEERVTNTTVVEKATGKTIVTAVLTISDLREDDFGLFTCHGME--GNETVQIQTVLKVAYVPKMENFKSTLDIEEGKMRYLECAAIGYPPPQIKWFFAHDQINFVEITDKAVATAHLHDGYSSHVRS----VLDYGDKNISRVDAGSYNCQVSN--SEASLDNILNVTVQFAPELSMSG-VEEVKMNDPNTFQCIV-ESNPQSDVKWFKNDEEISAFPKTVPINNLTLVRKDETFKIQSAQPDDMAVYKCEAINEVLGVKRKVVQSIDFKVRYAPIITATPLEQGVAAKTKLVLSCAAHAYPAIEEYMWRYNGNAIQD----FN---QEEYVIQSVDEQSEGIYQCQPMNAEGLGGRIVHNITVIVKP 2449
+EG +CT R Q + +++ N++++P E + S C V N+TW + + A +G V D+S L + +D +Y+CVA+ +G A+ L+++ P VS +G + V+ C P I W + + S +++Q + ++ V ED Y+CQATN E+ +Q + + P +S ++ V G +AVL C G P P + W+ + + + G + + L I +E D G +TC + G+ + +IQ L V + P++ + +E G+ L C A G PPP + W D L G S R VL + ++++ D Y C+ N + + L VT P+++ S V P + CIV P + W K+ + +P + +R D + + A + Y C A N R V + R P T +GVAA L C A PA W NA+ +N + +I Q G Y C N G + + ++V KP
Sbjct: 489 EEGTYECTAVSRAGTGRAKAQIVVTDPPPQLVPAPNVTVSP--GETAVLS-----CRVLGEAPYNLTWVRDWRVLPASTGR-----VAQLADLS-----LEISGIIPTDGGRYQCVASNANGVT-RASVWLLVREAPQ-VSIHTSSQHFSQGVE-VKVSCSASGYPTPHISWSRESQALQEDS--------RIHVDAQ-------GTLIIQGVAPEDAGNYSCQATN------EVGTDQETVTLYYTDPPSVSAVNAVVLVAVGEEAVLVCEASGVPPPRVIWYRGGLEM----------ILAPEGSS--SGKLRIPAAQERDAGTYTCRAVNELGDASAEIQ--LAVGHAPQLTELPRDVTVELGRSALLACRATGRPPPTVTW----------RRGDGQPLGLRLGAGRGSRSRQPDSGVLFF--ESVAPEDQAPYVCEARNVFGKVQAEARLIVTGHAPPQIASSAPTVRVLEGQPVSLPCIVLAGRPLPERHWLKDG-------RPLPPGSRHSIRADGSLHLDRALQEHAGRYSCVATNTAGSQHRDVELVVQVPPRIHPTATHHITNEGVAAS----LPCVASGVPA-PTITWTKETNALTSRGPHYNVSKEGTLLIAQPSAQDAGAYVCTATNTVGFSSQEMR-LSVNTKP 1066 HSP 5 Score: 94.3597 bits (233), Expect = 2.918e-19 Identity = 141/625 (22.56%), Postives = 235/625 (37.60%), Query Frame = 2
Query: 671 EFSPFAIKCFVQSRPVSNITWFKAANQIEADSGEYNISDVITTGDISTIESTLSVLEARASDTSQYKCVATTPDGRNLEAASDLIIQ-YGPNIVSFPADPYGTVEGAQN--VRFECVVHSNPVSTIDWFINEKLYNQSSPDLYDVSNETTINSQTNDAVVSSSFHVKNVRKEDIARYTCQATNNVIGRGELKNNQSAMLIISHKPYFLSNPPPLLAVRNGTQAVLN--CSVQGFPSPLAWWSSNITLDEERVTNTTVVEKATGKTIVTAVLTISDLREDDFGLFTCHGMEGNETVQIQTVLKVAYV--PKMEN--FKSTLDIEEGKMRYLECAAIGYPPPQIKWFFAHDQINFVEITDKAVATAHLHDGYSSHVRSVLDYGDKNISRVDAGSYNCQVSNSEASLDNILNVTVQFAPELSMSGVEE-------VKMNDPNTFQCIVESNPQSDVKWFKNDEEISAFPKTVPINNLTLVRKDETFKIQSAQPDDMAVYKCEAINEVLGVKRKVVQSIDFKVRYAPIITA-TPL-EQGVA-AKTK----LVLSCAAHAYPAIEEYMWRYNGNAIQDFNQEEYV-------IQSVDEQSEGIYQCQPMNAEGLGGRIVHNITVIVKPVF 2455
E P + C + P I+W K + + +S + L + +A+ + Y C + G ++ DL ++ + P ++ P +P V Q+ EC P T+ W D V E + Q S HV+ + RY+C A N+ GR E K S ++ P + + PL + + L C G P P W EE V+ G + L ++ +E D GL++C + NE + + V + P +EN + + + +G+ +L C G+P P++ WF + +A H V +L N+S AG Y+C +N+ ++V AP + + G E+ V +N+P + C + P ++ W K+ A N+ L+ +I +AQ +D Y C NE LG + V++ +V P I+ PL E GV KTK L L C + A P W +G + ++ + + IQ G Y C N G + N+ + V P+F
Sbjct: 2184 EGHPTRLSCECRGVPFPKISWRKDGQPLPGEGAGLQ--------HVSAVGRLLYLGQAQLAQEGTYTCECSNVVG---NSSQDLQLEVHVPPQIAGPREPPTQVSVVQDGVATLECNATGKPPPTVTW----------ERDGQPVGAELGLQLQNQ----GQSLHVERAQAAHTGRYSCVA-ENLAGRAERKFELSVLV----PPELIGDLDPLTNITAALHSPLTLLCEAMGIPPPAIRWFRG----EEPVSPGEDTYLLAGGWM----LKMTQTQEQDSGLYSC--LASNEAGEARRNFSVEVLVPPSIENEDLEEVIKVLDGQTAHLMCNVTGHPQPKLTWF----------KDGRPLARGDAHHISPDGV--LLQVLQANLS--SAGHYSCIAANAVGEKTKHFQLSVLLAPTI-LGGAEDSADEEVTVTVNNPISLICEALAFPSPNITWMKDGAPFEA------SRNIQLLPGTHGLQILNAQKEDAGQYTCVVTNE-LG---EAVKNYHVEVLIPPSISKDDPLAEVGVKEVKTKVNSTLTLECESWAVPP-PTIRWYKDGQPVTPSSRLQVLGEGRLLQIQPTQVSDSGRYLCVATNVAGEDDQDF-NVLIQVPPMF 2741 HSP 6 Score: 88.9669 bits (219), Expect = 1.226e-17 Identity = 151/755 (20.00%), Postives = 252/755 (33.38%), Query Frame = 2
Query: 452 PNVKAVYQGRVTLTFVEDEKAV-VLEMNDLKYEDEGAIDCTVTRTDLQKFLGSSMLKVITPQNISITPLSNEASEFSP--FAIKCFVQSRPVSNITWFKAANQIEADSGEYNISDVITTGDISTIESTLSVLEARASDTSQYKCVATTPDGRNLEAASDLIIQYGPNIVSFPADPYGTVEGAQNVRFECVVHSNPVSTIDWFINEKLYNQSSPDLYDVSNETTINSQTNDAVVSSSFHVKNVRKEDIARYTCQATNNVIGRGELKNNQSAMLIISHKPYFLSNPPPLLAVRNGTQAVLNCSVQGFPSPLA-WWSSNITLDEERVTNTTVVEKATGKTIVTAVLTISDLREDDFGLFTCHGMEGNETVQIQTVLKVAY--VPKMENFKSTLDIEEGKMRYLECAAIGYPPPQIKWFFAHDQINFVEITDKAVATAHLHDGYSSHVRSVLDYGDKNISRVDAGSYNCQVSNSEASLDNILNVTVQFAPELS-MSGVEEVKMNDPNTFQCIVESNPQSDVKWFKNDEEISAFPKTVPINNLTLVRKDETFKIQSAQPDDMAVYKCEAINEV---LGVKRKVVQSIDFKVRYAPIITATPLEQGVAAKTKLVLSCAAHAYPAIEEYMWRYNGNAIQDFNQE-------EYVIQSVDEQSEGIYQCQPMNAEGLGGRIVHNITVIVKPVFTTFPTCVHHEQQDILQCHFEGSGIPDPTHHWRVF------GQNDVIANQSALNISLSKDTEGNYSCVLSN 2647
PN+ G+ + +A VL + +++ D G C + + S ++V P NI +P ++C V++ P ITW + ++ D+ + G +++ +D+ Y C A G + A + I P I S P P V Q C P + W + + SP + + S ++ V +D Y C A+N+ G + + ++ A+L C G P PL WW LD +++ + + + L ++ D F C + NE + + +V P + + ++ + L C + G P P + W A Q+ GY L+ G + AG Y C NS + +TVQ +P + + V + C P+ + W K ++ T V +I A P+D Y C A N +G R VVQ P+I + + L C A P W +G + + E ++++++ Q G Y C NA G R VH +T++V PVFTT P D L G P P W V G ++ + ++S++ G Y C N
Sbjct: 3533 PNITWHKDGQALTRLENNSRATRVLRVENVQVRDAGLYTC-LAESPAGAIEKSFRVRVQAPPNIVGPRGPRFVVGLAPGQLVLECSVEAEPAPKITWHRDGIVLQEDAH----TQFPERGRFLQLQAL------STADSGDYSCTARNAAG-STSVAFRVEIHTVPTIRSGP--PAVNVSVNQTALLPCQADGVPAPLVSWRKDRVPLDPRSPRF--------------EILPEGSLRIQPVLAQDAGHYLCLASNSA---GSDRQGRDLRVL----------------------ALLPCEASGSPKPLVVWWKDGQKLDFR-------LQQGAYRLLPSNALLLTAPGPQDSAQFEC--VVSNEVGEAHRLYQVTVHVPPTIADDQTDFTVTMMAPVVLTCHSTGIPAPTVSWSKAGAQL------------GARGSGYRVSPSGALEIGQA--LPIHAGRYTCSARNSAGVAHKHVFLTVQASPVVKPLPSVVRAVAEEEVLLPCEASGIPRPTITWQKEGLNVATGVST-------QVLPGGQLRIAHASPEDAGNYLCIAKNSAGSAMGKTRLVVQ-------VPPVIENGLPDLSTTEGSHAFLPCKARGSPE-PNITWDKDGQPVSGAEGKFTIQPSGELLVKNLEGQDAGTYTCTAENAVGRARRRVH-LTILVLPVFTTLPGDRSLRLGDRLWLRCAARGSPTPRIGWTVNDRPVTEGVSEQDGGSTLQRAAVSREDSGTYVCWAEN 4195 HSP 7 Score: 87.0409 bits (214), Expect = 4.143e-17 Identity = 162/747 (21.69%), Postives = 264/747 (35.34%), Query Frame = 2
Query: 518 VLEMNDLKYEDEGAIDCTVTRTDLQKFLGSSMLKVITPQNI--SITPLSNEAS--EFSPFAIKCFVQSRPVSNITWFKAANQIEADSGEYNISDVITTGDISTIESTLSVLEARASDTSQYKCVATTPDGRNLEAASDLIIQYGPNIVSFPADPYGTVEGAQNVRFECVVHSNPVSTIDWFINEKLYNQSSPDLYDVSNETTINSQTNDAVVSSSFHVKNVRKEDIARYTCQATNNVIGRGELKNNQSAMLIISHKPYFLSNPPPLLAVRNGTQAVLNCSVQGFPSPLAWWSSNITLDEERVTNTTVVEKATGKTIVTAVLTISDLREDDFGLFTCH-GMEGNETVQIQTVLKVAYVPKMENFKS-TLDIEEGKMRYLECAAIGYPPPQIKWFFAHDQINFVEITDKAVATAHLHDGYSSHVRSVLDYGDK-NISRV---DAGSYNCQVSNSEASLDNILNVTVQFAPELSMSGV---------EEVKMNDPNTFQCIVESNPQSDVKWFKNDEEISAFPKTVPINNLTLVRKDETFKIQSAQPDDMAVYKCEAINEVLGVKRKVVQSIDFKVRYAPIITATPLEQGVAAKTKLV--------LSCAAHAYPAIEEYMWRYNG-------NAIQDFNQEEYVIQSVDEQSEGIYQCQPMNAEGLGGRIVHNITVIVKPVF--TTFPTCVHHEQQDILQCHFEGSGIPDPTHHWRVFGQ---NDVIANQSALNI-SLSKDTEGNYSCV 2638
VL++ ++ E+ G C + + +L +L V+TP I L E + S +++C PV I+W + V+ G + L V A +D + Y CVA G + E L +Q P I + + + +V C VH++P + W Y S ++ + + + + R D YTC+A N GR + K Q ++L+ P + VR G +AVL+C P P W + V+ + T L I + + D GL++C E V+ T L V P EN K+ T+ G L C G P P + W + D+ SS V V+ G + +SR+ AG+Y C N++A V V AP + SGV +EV+++ C + P DV W K+ + P +L + ++ + D Y C A N D ++ ++ ++QG LV + C P I W +G + + I V GI+ C + G+ R + V V PV F V + +++ E G+P P W G+ + + +L + ++ G YSCV
Sbjct: 2813 VLQIPLVRAENAGRYSCKASNEVGEDWLHYELL-VLTPPVILGDTEELVEEVTVNASSTVSLQCPALGNPVPTISWLQNGLPFSPSPR----LQVLEDGQV------LQVSTAEVADAASYMCVAENQAG-SAEKLFTLRVQVPPRIAGLDLEQVTAILNS-SVSLPCDVHAHPNPEVTW--------------YKDSQALSLGEEVFLLPGTHTLQLGRARLSDSGMYTCEALN-AAGRDQ-KLVQLSVLVPPAFRQAPRGPQDAVLVRVGDKAVLSCETDALPEPTVTWYKD--------GQPLVLAQRTQALRGGQRLEIQEAQVSDKGLYSCKVSNVAGEAVRTFT-LTVQVPPTFENPKTETVSQVAGSPLVLTCDVSGVPAPTVTW-----------LKDRMPVE-------SSAVHGVVSRGGRLQLSRLQPAQAGTYTCVAENTQAEARKDFVVAVLVAPRIRSSGVAREHHVLEGQEVRLD------CEADGQPPPDVAWLKDGSPLGQ--DMGP--HLRFYLDGGSLVLKGLRASDAGAYTCVAHNPA---------GEDARLHTVNVLVPPTIKQGADGSGTLVSRPGELVTMVCPVRGSPPI-HVSWLKDGLPLPLSQRTLLHGSGHTLRISKVQLADAGIFTCVAASPAGVADRNF-TLQVQVPPVLEPVEFQNDVVVVRGSLVELPCEARGVPLPLVSWMKDGEPLLSQSLEQGPSLQLEAVGAGDSGTYSCV 3482 HSP 8 Score: 84.3445 bits (207), Expect = 3.124e-16 Identity = 162/770 (21.04%), Postives = 261/770 (33.90%), Query Frame = 2
Query: 521 LEMNDLKYEDEGAIDCTVTRTDLQKFLGSSMLKVITPQNISITPLSNEASEFSPFAIKCFVQSRPVSNITWFKAANQIEADSGEYNISDVITTGDISTIESTLSVLEARASDTSQYKCVATTPDGRNLEAASDLIIQYGPNIV---SFPAD-PYG-TVEGAQNVRFECVVHSNPVSTIDWFINEKLYNQSSPDLYDVSNETTINSQTNDAVVSSSFHVKNVRKEDIARYTCQATNNVIGRGELKNNQSAMLIISHKPYFLSNPPPLLAVRNGTQAVLNCSVQGFPSPLAWWSSNITLDEERVTNTTVVEKATGKTIVTAVLTISDLREDDFGLFTCHGMEGNETVQIQTVLKVAYVPK--MENFKSTLDIEEGKMRYLECAAIGYPPPQIKWFFAHDQINFVEITDKAVATAHLHDGYSSHVRSVLDYGD---KNISRVDAGSYNCQVSNSEASLDNILNVTVQFAPEL-------SMSGVEEVKMNDPNTFQCIVESNPQSDVKWFKNDEEISAFPKTVPINNLTLVRKDETFKIQSAQPDDMAVYKCEAINEVLGVKRKVVQSIDFK--VRYAPIITATPLEQGV--AAKTKLVLSCAAHAYPAIEEYMWRYN------GNAIQDFNQEEYVIQSVDEQ--SEGIYQCQPMNAEGLGGRIVHNITVIVKPVF----TTFPTCVHHEQQDILQCHFEGSGIPDPTHHWRVFG-----QNDVIANQSALNISLSK---DTEGNYSCVLSNSRATIEEVLNIEDFVPRNSE 2707
L ++ E G C T T + ++ V P I T + +E ++ C P ITW K N + + YN+S E TL + + A D Y C AT G + + L + P I S AD P T + + V +C +P + W + S + ++N + + S S + V+ D Y C A+N + ++ P + P +L V G LNC +G P P WS + + + R +V + +R D G + C + L+V P + L+ G+ L C A G P PQ+ W K ++ LH +VL+ G ++S D+G Y CQ +N S + V P + ++SG+ + T +C P ++ W K+ + I PK + L+ + ++ Q D +Y C A N+ +R DF V P + Q V A + L C P + W + G ++ V++ EG YQC + G R + V P T V + L C E G+P P W G V+ + + L + G Y+C SN+ E+ ++ +VP E
Sbjct: 939 LHLDRALQEHAGRYSCVATNTAGSQHRDVELV-VQVPPRIHPTATHHITNEGVAASLPCVASGVPAPTITWTKETNALTSRGPHYNVSK----------EGTLLIAQPSAQDAGAYVCTATNTVGFSSQEMR-LSVNTKPRIHMNGSRNADVPLQVTAKAGEEVTLDCEAKGSPPPLVTW-------TKDSRPVPPITNRYGL-------LPSGSLRLAQVQVGDSGHYECTASNPA------GSASHRYVLGVQVPPQVQPGPRVLKVLVGEALDLNCVAEGNPEPQLSWSKDGVVLQGRGPQGSV--------------HFAAIRTSDAGRYRCEASNSAGVDAWEVELRVLEPPHWGADETSGLLERVAGENASLPCPARGTPKPQVTW-------------RKGPSSEPLHGQPGV---AVLEEGSLFLASVSPADSGDYECQATNEVGSTSRRAKLVVYVPPSIREDGRKANVSGMAGQSL----TLECDANGFPVPEIVWLKDAQLI---PK---VGGHRLLDEGQSLHFPRIQEGDSGLYSCRAENQAGTAQR------DFHLLVLTPPSVLGAGAAQEVLGLAGADVELQCWTSGVPT-PQVEWTKDRQPVLPGGPHLQVQEDGQVLRITGSHVGDEGRYQCVAFSPAGQQARDFQ-LRVHAPPTIWGSNETGEVAVMEDHLVQLLC--EARGVPTPNITWFKDGALLPTSTKVVYTRGGRQLQLGRAQSSDAGVYTCKASNAVGAAEKATRLDVYVPPTIE 1626 The following BLAST results are available for this feature:
BLAST of TCONS_00064592 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.