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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064553 ID=TCONS_00064553|Name=TCONS_00064553|organism=Clytia hemisphaerica|type=transcript|length=1418bp
TACACATCGAAAGCCGATCAAGAGAGCAAAGCTACACGAACACAGCAAAA
ACACAccttttctcaaaactttctaaaacacagaattcaaaatggctgac
GATGATGTTGCTGCTCTTGTCGTAGACAATGGATCTGGTATGTGCAAAGC
GGGATTTGCTGGAGATGATGCTCCAAGAGCTGTCTTCCCCTCCATCGTTG
GACGTCCTCGTCATCAAGGTGTCATGGTTGGTATGGGACAAAAAGACTCG
TACGTCGGTGATGAAGCTCAATCCAAAAGAGGTATCCTCACCTTGAAATA
CCCAATCGAACACGGAATCGTCACCAACTGGGATGATATGGAAAAGATCT
GGCATCACACTTTCTACAATGAACTCCGTGTTGCACCAGAAGAACACCCA
GTCCTCCTTACCGAAGCTCCATTGAACCCAAAAGCTAACAGAGAAAAAAT
GACCCAAATCATGTTCGAAACCTTCAACTCCCCAGCTATGTACGTCGCTA
TCCAAGCTGTCTTATCATTGTACGCCTCTGGACGTACCACCGGTATTGTC
TTGGATTCAGGAGATGGTGTCTCTCACACTGTCCCAATCTACGAAGGTTA
TGCTCTTCCCCATGCTATCATCCGTCTTGATTTGGCTGGACGTGATTTGA
CAGACTACTTGATGAAAATCTTGACCGAACGTGGATACTCCTTCACCACC
ACTGCTGAACGTGAAATCGTCCGTGAcatcaaagaaaaattgtgCTACGT
CGCCTTGGACTTTGAACAAGAAATGCAAACTGCTGCATCAAGCTCTAGTT
TGGAGAAATCCTATGAATTACCTGATGGACAAGTCATCACCATTGGAAAC
GAACGATTCCGATGCCCAGAAACCCTCTTCCAACCCGCCTTCATTGGTAT
GGAATCTGCTGGTATCCACGAAACCACCTACAACTCCATCATGAAATGTG
ACGTCGATATCCGTAAGGACTTGTACGCCAACACCGTCTTATCCGGAGGA
ACGACCATGTTCCCAGGTATTGCTGACCGTATGCAAAAGGAAATCTCCGC
CCTTGCTCCACCAACCATGAAAATCAAGATTATCGCTCCACCAGAAAGAA
AATACTCCGTCTGGATCGGAGGATCCATCTTGGCCTCACTCTCCACCTTC
CAACAGATGTGGATCTCCAAACAAGAATACGACGAATCTGGTCCATCCAT
CGTCCACAGAAAATGCTTCTAGATACATTCAATTTTCGGACAGTTTCAAC
CACCGGACACACATTAAAATTTCACCAATCAAACATCGGACATTTTTTCA
GTTATTTAttgtttattgttttcatttttttacaaaacacACATCCAAAA
ATGCAATCTGTGAgtgtaaaattttttgaatgaatttttataattgaaat
agaaaataggaaaattat Run BLAST on NCBI protein sequence of TCONS_00064553-protein >TCONS_00064553-protein ID=TCONS_00064553-protein|Name=TCONS_00064553-protein|organism=Clytia hemisphaerica|type=polypeptide|length=376bp
MADDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ
KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE
EHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTT
GIVLDSGDGVSHTVPIYEGYALPHAIIRLDLAGRDLTDYLMKILTERGYS
FTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSSSLEKSYELPDGQVIT
IGNERFRCPETLFQPAFIGMESAGIHETTYNSIMKCDVDIRKDLYANTVL
SGGTTMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASL
STFQQMWISKQEYDESGPSIVHRKCF Run BLAST on NCBI transcript from alignment at scaffold_419:147911..150474- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064553 ID=TCONS_00064553|Name=TCONS_00064553|organism=Clytia hemisphaerica|type=transcript|length=2564bp|location=Sequence derived from alignment at scaffold_419:147911..150474- (Clytia hemisphaerica)
TACACATCGAAAGCCGATCAAGAGTAAGTAATAATTTTTTCTCATTTGGA
AGTACTCGAGTTTTAATAAAATTTGTTTACATATGCTTTTAAATTAGCAC
TTTTGCCAACCGATTTATTGCAACACCCTTGTCTCGGTAACCGGGTGAAA
AAAAATTCTTAGTTTTAATGCAGTACCCCCGGGGTAGTACCTAAAATGAA
TGTGGTGTCAAGCAAATATTTAATTTTGGAGCTTGAAAACTTTTTAAATT
TTTTTTAACATTTCATGGAATGTTTTTAAAGTTTGGTTCTCAATATTTTA
GGAACACATTATTTTCGCATCCCATCTATAGTCTACCATTTTTAATCCGC
CATTTTAGATGCTTGTCATATTTCATATTTCTCTCCTTTAAAAGGAGATT
TAAAAAAAAGGACTTCTCAACAATGTTTTGATTTTGGCTTAATCCAAACA
TTACAAAATGTCACTTGACAATCTCACTTTCCTATGTTTTGTCCACCCTC
ATATCTTTGTCTCTTTCCCATTACACGTTTGCTATAGAACTCCATATAAG
GATTGCTGTAAAGTGTTTGGACTCTATTTTCTAACCTGATAAACCCTTCA
GAAATCCATTTGAACGTATTGAAAATGTTTATTGGACGTTAAGGTGTCAA
TTTCCCGGATCATCTATGTCATTTGACAAAATAAATACTATTCGTATAAA
TGTGTGTTGACAAGTTTGAATCGATCACTCTGTTTTCCTTACTTATAGGA
GCAAAGCTACACGAACACAGCAAAAACACACCTTTTCTCAAAACTTTCTA
AAACACAGAATTCAAAATGGCTGACGATGATGTTGCTGCTCTTGTCGTAG
ACAATGGATCTGGTATGTGCAAAGCGGGATTTGCTGGAGATGATGCTCCA
AGAGCTGTCTTCCCCTCCATCGTTGGACGTCCTCGTCATCAAGGTGTCAT
GGTTGGTATGGGACAAAAAGACTCGTACGTCGGTGATGAAGCTCAATCCA
AAAGAGGTATCCTCACCTTGAAATACCCAATCGAACACGGAATCGTCACC
AACTGGGATGATATGGAAAAGGTAAGCTAAAACTACTTTGATAATTCTAG
ATTAAACCTGAAACTGAACATGCCACACCTCTTCAAACATCTGTAACTGA
ACATGCCTTTTTAGACCGCACACTATCCTTTATTCTATTTATTTACTTCT
GGATGAACTGGATGGCCCCTCCCTGAGTTTGTGGGAATGGATAAATGGGC
TTTTTCTGTTGCGTGAATTCAGGGTCCACTGAGGAGGGCCCATTAATAAT
TACCGATGATGAGTTAAATCAAGTAGAAATAGATAAGTTTCTTTTGGGTA
AAAGCTTTCATGGTATATGAATATGGTTTAATCAACTGTTATATATTTTT
TCAACAACAAATCATGAGAGTGTTCTTATATCAGTAGATACAGAAATTTC
ATATCCAAAAACTAATAAAAGTGATTGTCGCTCTCTATTTAGATCTGGCA
TCACACTTTCTACAATGAACTCCGTGTTGCACCAGAAGAACACCCAGTCC
TCCTTACCGAAGCTCCATTGAACCCAAAAGCTAACAGAGAAAAAATGACC
CAAATCATGTTCGAAACCTTCAACTCCCCAGCTATGTACGTCGCTATCCA
AGCTGTCTTATCATTGTACGCCTCTGGACGTACCACCGGTATTGTCTTGG
ATTCAGGAGATGGTGTCTCTCACACTGTCCCAATCTACGAAGGTTATGCT
CTTCCCCATGCTATCATCCGTCTTGATTTGGCTGGACGTGATTTGACAGA
CTACTTGATGAAAATCTTGACCGAACGTGGATACTCCTTCACCACCACTG
CTGAACGTGAAATCGTCCGTGACATCAAAGAAAAATTGTGCTACGTCGCC
TTGGACTTTGAACAAGAAATGCAAACTGCTGCATCAAGCTCTAGTTTGGA
GAAATCCTATGAATTACCTGATGGACAAGTCATCACCATTGGAAACGAAC
GATTCCGATGCCCAGAAACCCTCTTCCAACCCGCCTTCATTGGTATGGAA
TCTGCTGGTATCCACGAAACCACCTACAACTCCATCATGAAATGTGACGT
CGATATCCGTAAGGACTTGTACGCCAACACCGTCTTATCCGGAGGAACGA
CCATGTTCCCAGGTATTGCTGACCGTATGCAAAAGGAAATCTCCGCCCTT
GCTCCACCAACCATGAAAATCAAGATTATCGCTCCACCAGAAAGAAAATA
CTCCGTCTGGATCGGAGGATCCATCTTGGCCTCACTCTCCACCTTCCAAC
AGATGTGGATCTCCAAACAAGAATACGACGAATCTGGTCCATCCATCGTC
CACAGAAAATGCTTCTAGATACATTCAATTTTCGGACAGTTTCAACCACC
GGACACACATTAAAATTTCACCAATCAAACATCGGACATTTTTTCAGTTA
TTTATTGTTTATTGTTTTCATTTTTTTACAAAACACACATCCAAAAATGC
AATCTGTGAGTGTAAAATTTTTTGAATGAATTTTTATAATTGAAATAGAA
AATAGGAAAATTAT Coding sequence (CDS) from alignment at scaffold_419:147911..150474- >TCONS_00064553 ID=TCONS_00064553|Name=TCONS_00064553|organism=Clytia hemisphaerica|type=CDS|length=2262bp|location=Sequence derived from alignment at scaffold_419:147911..150474- (Clytia hemisphaerica)
ATCTGGCATCACACTTTCTACAATGAACTCCGTGTTGCACCAGAAGAACA
CCCAGTCCTCCTTACCGAAGCTCCATTGAACCCAAAAGCTAACAGAGAAA
AAATGACCCAAATCATGTTCGAAACCTTCAACTCCCCAGCTATGTACGTC
GCTATCCAAGCTGTCTTATCATTGTACGCCTCTGGACGTACCACCGGTAT
TGTCTTGGATTCAGGAGATGGTGTCTCTCACACTGTCCCAATCTACGAAG
GTTATGCTCTTCCCCATGCTATCATCCGTCTTGATTTGGCTGGACGTGAT
TTGACAGACTACTTGATGAAAATCTTGACCGAACGTGGATACTCCTTCAC
CACCACTGCTGAACGTGAAATCGTCCGTGACATCAAAGAAAAATTGTGCT
ACGTCGCCTTGGACTTTGAACAAGAAATGCAAACTGCTGCATCAAGCTCT
AGTTTGGAGAAATCCTATGAATTACCTGATGGACAAGTCATCACCATTGG
AAACGAACGATTCCGATGCCCAGAAACCCTCTTCCAACCCGCCTTCATTG
GTATGGAATCTGCTGGTATCCACGAAACCACCTACAACTCCATCATGAAA
TGTGACGTCGATATCCGTAAGGACTTGTACGCCAACACCGTCTTATCCGG
AGGAACGACCATGTTCCCAGGTATTGCTGACCGTATGCAAAAGGAAATCT
CCGCCCTTGCTCCACCAACCATGAAAATCAAGATTATCGCTCCACCAGAA
AGAAAATACTCCGTCTGGATCGGAGGATCCATCTTGGCCTCACTCTCCAC
CTTCCAACAGATGTGGATCTCCAAACAAGAATACGACGAATCTGGTCCAT
CCATCGTCCACAGAAAATGCTTCTAGATGGCTGACGATGATGTTGCTGCT
CTTGTCGTAGACAATGGATCTGGTATGTGCAAAGCGGGATTTGCTGGAGA
TGATGCTCCAAGAGCTGTCTTCCCCTCCATCGTTGGACGTCCTCGTCATC
AAGGTGTCATGGTTGGTATGGGACAAAAAGACTCGTACGTCGGTGATGAA
GCTCAATCCAAAAGAGGTATCCTCACCTTGAAATACCCAATCGAACACGG
AATCGTCACCAACTGGGATGATATGGAAAAGATCTGGCATCACACTTTCT
ACAATGAACTCCGTGTTGCACCAGAAGAACACCCAGTCCTCCTTACCGAA
GCTCCATTGAACCCAAAAGCTAACAGAGAAAAAATGACCCAAATCATGTT
CGAAACCTTCAACTCCCCAGCTATGTACGTCGCTATCCAAGCTGTCTTAT
CATTGTACGCCTCTGGACGTACCACCGGTATTGTCTTGGATTCAGGAGAT
GGTGTCTCTCACACTGTCCCAATCTACGAAGGTTATGCTCTTCCCCATGC
TATCATCCGTCTTGATTTGGCTGGACGTGATTTGACAGACTACTTGATGA
AAATCTTGACCGAACGTGGATACTCCTTCACCACCACTGCTGAACGTGAA
ATCGTCCGTGACATCAAAGAAAAATTGTGCTACGTCGCCTTGGACTTTGA
ACAAGAAATGCAAACTGCTGCATCAAGCTCTAGTTTGGAGAAATCCTATG
AATTACCTGATGGACAAGTCATCACCATTGGAAACGAACGATTCCGATGC
CCAGAAACCCTCTTCCAACCCGCCTTCATTGGTATGGAATCTGCTGGTAT
CCACGAAACCACCTACAACTCCATCATGAAATGTGACGTCGATATCCGTA
AGGACTTGTACGCCAACACCGTCTTATCCGGAGGAACGACCATGTTCCCA
GGTATTGCTGACCGTATGCAAAAGGAAATCTCCGCCCTTGCTCCACCAAC
CATGAAAATCAAGATTATCGCTCCACCAGAAAGAAAATACTCCGTCTGGA
TCGGAGGATCCATCTTGGCCTCACTCTCCACCTTCCAACAGATGTGGATC
TCCAAACAAGAATACGACGAATCTGGTCCATCCATCGTCCACAGAAAATG
CTTCTAGATGGCTGACGATGATGTTGCTGCTCTTGTCGTAGACAATGGAT
CTGGTATGTGCAAAGCGGGATTTGCTGGAGATGATGCTCCAAGAGCTGTC
TTCCCCTCCATCGTTGGACGTCCTCGTCATCAAGGTGTCATGGTTGGTAT
GGGACAAAAAGACTCGTACGTCGGTGATGAAGCTCAATCCAAAAGAGGTA
TCCTCACCTTGAAATACCCAATCGAACACGGAATCGTCACCAACTGGGAT
GATATGGAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064553-exon-scaffold_419-1575043694:150452..150474 | TCONS_00064553-exon-scaffold_419-1575043694:150452..150474 | Clytia hemisphaerica | exon |
| TCONS_00064553-exon-scaffold_419-1575043694:149404..149726 | TCONS_00064553-exon-scaffold_419-1575043694:149404..149726 | Clytia hemisphaerica | exon |
| TCONS_00064553-exon-scaffold_419-1575043694:147911..148982 | TCONS_00064553-exon-scaffold_419-1575043694:147911..148982 | Clytia hemisphaerica | exon |
| TCONS_00064553-exon-scaffold_419-1510915933:150452..150474 | TCONS_00064553-exon-scaffold_419-1510915933:150452..150474 | Clytia hemisphaerica | exon |
| TCONS_00064553-exon-scaffold_419-1510915933:149404..149726 | TCONS_00064553-exon-scaffold_419-1510915933:149404..149726 | Clytia hemisphaerica | exon |
| TCONS_00064553-exon-scaffold_419-1510915933:147911..148982 | TCONS_00064553-exon-scaffold_419-1510915933:147911..148982 | Clytia hemisphaerica | exon |
| TCONS_00064553-exon-scaffold_419-1491911889:150452..150474 | TCONS_00064553-exon-scaffold_419-1491911889:150452..150474 | Clytia hemisphaerica | exon |
| TCONS_00064553-exon-scaffold_419-1491911889:149404..149726 | TCONS_00064553-exon-scaffold_419-1491911889:149404..149726 | Clytia hemisphaerica | exon |
| TCONS_00064553-exon-scaffold_419-1491911889:147911..148982 | TCONS_00064553-exon-scaffold_419-1491911889:147911..148982 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_419 | supercontig | scaffold_419:147911..150474 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00064553 vs. Swiss-Prot (Human)
Match: ACTG (Actin, cytoplasmic 2 OS=Homo sapiens GN=ACTG1 PE=1 SV=1) HSP 1 Score: 744.577 bits (1921), Expect = 0.000e+0 Identity = 351/364 (96.43%), Postives = 360/364 (98.90%), Query Frame = 2
Query: 128 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIIRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPAFIGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 1219
NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM TAASSSSLEKSYELPDGQVITIGNERFRCPE LFQP+F+GMES GIHETT+NSIMKCDVDIRKDLYANTVLSGGTTM+PGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 12 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
The following BLAST results are available for this feature:
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