TCONS_00064414 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064414
Unique NameTCONS_00064414
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length437

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064414 ID=TCONS_00064414|Name=TCONS_00064414|organism=Clytia hemisphaerica|type=transcript|length=437bp
ATTGTTTCCATGACAAAGAAaatttcgttcgttcgttcgttcgttcgttc
gttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgt
tcgttcgttcgtttcgAAACTCAAAACCCGATTTCCAACGGTGCACACCA
TCAGatccTTGCAGCCAACTTTTTAGCACAAACAGAAGCTTTGATGAAAG
GGAAAACTGAAGAAGAAGCACGCTCTGAACTCGAAAAGTCTGGAATGGAC
GCGGGAAAGATTGCTGCGTTGGTCCCTCATAAGCAATTCACTGGCAATCG
ACCCACTAATCCCATCgtctttcaaaaattatcaCCTTTCACACTTGGGC
TCATCGGAGTCATCTGGAATATCAATTCTTATGATCAATGGGGGTGAGTC
attgaaaagtcaatttttttccttgactggatcgggc
Run BLAST on NCBI

transcript from alignment at scaffold_414:44688..46654+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064414 ID=TCONS_00064414|Name=TCONS_00064414|organism=Clytia hemisphaerica|type=transcript|length=1967bp|location=Sequence derived from alignment at scaffold_414:44688..46654+ (Clytia hemisphaerica)
ATTGTTTCCATGACAAAGAAaatttcgttcgttcgttcgttcgttcgttc
gttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgt
tcgttcgttcgtttcgAAACTCAAAACCCGATTTCCAACGGTGCACACCA
TCAGGTATTTTGTCAAATTCTAAATGTTCTTACTTTTCCATACTAAGGCT
TCAATATTCTGCAGGCTTAGTTTCTTTAGGTTAAGGTTGTCCTTTGTTCT
CATTCTCAACTTATGAAgcttttaaaaattaataacaatTTTAAGTCTGC
ATTGATAGCTTCTCAAGCGTACAATGGGTTGGTGAGAAATGAGCGCCATA
AGTCAGAACACGACCTCCAATCCCATAAAGATGAGGTGGACTATGATTAC
TGGGGGACTTTTCTTTGCATTTCGGCGAAATATCTTGACTTCTCTTATCt
ctaaaaaagttttgaaagtctcGAATCGCTACTGGAGGTCTTTGAAAGTT
TTCGGCGGTGCATGATACCCCCTGAACAGACAGGCAGATCATAAtcacaa
ttttctttttcagatccTTGCAGCCAACTTTTTAGCACAAACAGAAGCTT
TGATGAAAGGGAAAACTGAAGAAGAAGCACGCTCTGAACTCGAAAAGTCT
GGAATGGACGCGGGAAAGATTGCTGCGTTGGTCCCTCATAAGGTATTCTT
TTACCTTCAGTTAAAATAGAATCTGAGGATGTCTTGTTTGTGTTTGAATT
TAtccattttaagacttttcAACTGTTTAAGTAATGATTGAAAAgcgacg
agatggagttttaaCAAGCTCTATTTGATTTGgtttaaccagtaataaaa
caattttgttacctTTTGTGAAAAACGCGTAATTTTTATTACtccaaatg
accaattattaaagtatcttataaaaactccatctgtTCTGCTCTAGTTT
AATTTATCAATTCAGTTTTTGGTgactcaattttgaaatttatttaccca
aataataaattaaaattcatttttctcgAAGGtcaaacttttttatatat
ttttggcgCATGCGTTATCATACTCTTTGTTTGTTTATAGCAATTCACTG
GCAATCGACCCACTAATCCCATCgtctttcaaaaattatcaCCTTTCACA
CTTGGGCTCATCGGTAAGACAGCTTTTAGATTTACATGGTACTAAACTGA
CATTTTTTGGGCTAGTTATTAAACGAAACATGACACTGGAAGTTTGATTT
AGCTTGCACATGGAGAGTTTATTTAGCCCGAGACAAACCATAAGCACTTT
TATTAGCTTTATTTGGCTGATTTCTCCCCTAAGATCTTGATGAAAAGTTA
ACCGCTTCTCCAATACTACTAACTACTACTtgcttttgaagtttttgaga
ACTTTCTAAAAGTAgtagaatttgaaaatattgaatctAAATTATTAAAC
TTTTTCGTGGTGTACTCCTTAGTCAATATAATCCACACTTAAtgacactc
ccttctcacagacccggtaggatttcgCCAGTGGGGTGAAAAAACTAACT
GAaattcgatggggattgatattcccatgttttttatgaatggggatttg
aattccatggttttcaagtcagaaaatccaGTGAAGATggaaaatagcac
aatattttgcagtgaggatttgtttatttcatTATCTTCAGCGGGAACAA
AAATGGGAGTATATACTTTTCAACTGGGGACGAtactttggcaaattttt
tcagtgggaGGGGTTCtaccggatctgtgagaagggaatgTTAATTTTGT
TGGTTCTCCGAAACTTGAAAactattttgttattttttcttctctttctt
tgatAACATTGTACGAGCACAAGATTTTCGTTCAAGGAGTCATCTGGAAT
ATCAATTCTTATGATCAATGGGGGTGAGTCattgaaaagtcaattttttt
ccttgactggatcgggc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040392XLOC_040392Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064414-exon-scaffold_414-1491911889:44688..44841TCONS_00064414-exon-scaffold_414-1491911889:44688..44841Clytia hemisphaericaexon
TCONS_00064414-exon-scaffold_414-1510915933:44688..44841TCONS_00064414-exon-scaffold_414-1510915933:44688..44841Clytia hemisphaericaexon
TCONS_00064414-exon-scaffold_414-1575043694:44688..44841TCONS_00064414-exon-scaffold_414-1575043694:44688..44841Clytia hemisphaericaexon
TCONS_00064414-exon-scaffold_414-1491911889:45251..45379TCONS_00064414-exon-scaffold_414-1491911889:45251..45379Clytia hemisphaericaexon
TCONS_00064414-exon-scaffold_414-1510915933:45251..45379TCONS_00064414-exon-scaffold_414-1510915933:45251..45379Clytia hemisphaericaexon
TCONS_00064414-exon-scaffold_414-1575043694:45251..45379TCONS_00064414-exon-scaffold_414-1575043694:45251..45379Clytia hemisphaericaexon
TCONS_00064414-exon-scaffold_414-1491911889:45778..45850TCONS_00064414-exon-scaffold_414-1491911889:45778..45850Clytia hemisphaericaexon
TCONS_00064414-exon-scaffold_414-1510915933:45778..45850TCONS_00064414-exon-scaffold_414-1510915933:45778..45850Clytia hemisphaericaexon
TCONS_00064414-exon-scaffold_414-1575043694:45778..45850TCONS_00064414-exon-scaffold_414-1575043694:45778..45850Clytia hemisphaericaexon
TCONS_00064414-exon-scaffold_414-1491911889:46574..46654TCONS_00064414-exon-scaffold_414-1491911889:46574..46654Clytia hemisphaericaexon
TCONS_00064414-exon-scaffold_414-1510915933:46574..46654TCONS_00064414-exon-scaffold_414-1510915933:46574..46654Clytia hemisphaericaexon
TCONS_00064414-exon-scaffold_414-1575043694:46574..46654TCONS_00064414-exon-scaffold_414-1575043694:46574..46654Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_414supercontigscaffold_414:44688..46654 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.59912	1.86252	9.56407	5.61298	12.5518	9.87555	20.467	21.6334	16.3831	24.6248	22.8333	16.5748	19.4585	21.0313	11.9532	11.8172	16.2832	19.6336	13.5604	15.8054	17.8673	17.7146	8.90439	13.6509	69.0397	72.2732	17.8038	16.5063	29.6414	31.3774
Blast
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BLAST of TCONS_00064414 vs. Swiss-Prot (Human)
Match: G6PI (Glucose-6-phosphate isomerase OS=Homo sapiens GN=GPI PE=1 SV=4)

HSP 1 Score: 123.25 bits (308), Expect = 2.957e-33
Identity = 59/104 (56.73%), Postives = 73/104 (70.19%), Query Frame = 2 
Query:  116 ETQNPISNGAHHQILAANFLAQTEALMKGKTEEEARSELEKSGMDAGKIAALVPHKQFTGNRPTNPIVFQKLSPFTLGLI-----------GVIWNINSYDQWG 394
            +TQ+PI  G HH+IL ANFLAQTEALM+GK+ EEAR EL+ +G     +  L+PHK F GNRPTN IVF KL+PF LG +           G+IW+INS+DQWG
Sbjct:  411 QTQHPIRKGLHHKILLANFLAQTEALMRGKSTEEARKELQAAGKSPEDLERLLPHKVFEGNRPTNSIVFTKLTPFMLGALVAMYEHKIFVQGIIWDINSFDQWG 514
The following BLAST results are available for this feature:
BLAST of TCONS_00064414 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
G6PI2.957e-3356.73Glucose-6-phosphate isomerase OS=Homo sapiens GN=G... [more]
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