TCONS_00064249 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064249
Unique NameTCONS_00064249
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length786

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064249 ID=TCONS_00064249|Name=TCONS_00064249|organism=Clytia hemisphaerica|type=transcript|length=786bp
CAAAGTCttcttcccagctggcacaacaGTGTATATCCAGcagacacaca
acgttgtttcaaggTTTATCTGACGTTCATaatgtccatataacgttaga
tgaacgttgaaacaacgttgtgtgccagctgggctgtGAAAAAACCTTCt
agctaaaaaaaatttcaaacatcaaTCAGCAAACATTCAGTAAACTCACA
AGCCCAGAGCTGCGTCAATGAAAAATTGTAGTTCGAGGCTTCAAAGCTTA
GATTTAGAAGAAGTGAACAATGGGTTTGGAGCAAAAGAATAAAATGACAA
CAAACGAGAAAATCAGCATTACCATTGAAAAGAAAGCAAACGCCAGTGAA
GAAGAAAACATTGAAGaactttcagaaaatcaactcCGACAAATTATTGC
TCGTCAGAAACGTCGTTCTTCTTACATCGTTGAAGAAATTGTCAATTATT
GTATTCCATTGGTCAAAGTTGAATTTGCTGGCCAATCGAACACAACTAAA
AGTGACGAAACTGATGGAAGTGAAACCGTGTTAAATCTTGGTGTATATCT
CTCCTTATTGGATCGTGTCATTCGTAAATATAAAGATCCATTACAATTTA
CCATCAAAGACGAAGAATATTGTTCAGTGTTACGTTTGGTGGCCACCAAG
AGATgtttaaagaaagaaacgaCTGAAGAATGTTATGAAAGATTAATGAA
AGATAGTgaagaatttgagaaaatataCCATGAAAGAAAAGtTCTTTCAG
AGgttttgaaaaacgaagatttttgggGCACACGAC
Run BLAST on NCBI

transcript from alignment at scaffold_41:815923..819188-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064249 ID=TCONS_00064249|Name=TCONS_00064249|organism=Clytia hemisphaerica|type=transcript|length=3266bp|location=Sequence derived from alignment at scaffold_41:815923..819188- (Clytia hemisphaerica)
CAAAGTCTTCTTCCCAGCTGGCACAACAGTGTATATCCAGCAGACACACA
ACGTTGTTTCAAGGTTTATCTGACGTTCATAATGTCCATATAACGTTAGA
TGAACGTTGAAACAACGTTGTGTGCCAGCTGGGCTGTGAAAAAACCTTCT
AGCTAAAAAAAATTTCAAACATCAATCAGCAAACATTCAGTAAACTCACA
AGCCCAGAGCTGCGTCAATGAAAAATTGTAGTTCGAGGCTTCAAAGCTTA
GATTTAGAAGAAGTGAACAATGGGTTTGGAGCAAAAGAATAAAATGACAA
CAAACGAGAAAATCAGCATTACCATTGAAAAGAAAGCAAACGCCAGTGAA
GAAGAAAACATTGAAGAACTTTCAGAAAATCAACTCCGACAAATTATTGC
TCGTCAGAAACGTCGTTCTTCTTACATCGTTGAAGAAATTGTCAATTATT
GTATTCCATTGGTCAAAGTTGAATTTGCTGGCCAATCGAACACAACTAAA
GTAAGTACTCTTAGGTTCCAAATAAACGGGGGAGGGAAAAATGTTCAAAA
TTTTAATAAGCAGGGGGGGGCTAATTGCCGGGGGGTTAGAAATTATGATT
ACGAAAACCCAAATATAAGGTAAATATAGGCTAAAATCAGGCTATTTAGA
GCAGAATGAGGGACCTCTTTGAAAGCTGAAAAAATTCTTAAAAACTAAAA
AGGTCCGGGTGGGGTTGGAAAATTTTTTGATGAATTAACAGGGGGGGGGG
GGGCGTTTATTTGGAACCTAAGAGTATAGTAAATTTACCACCACTTTTCG
CTCTAGACCCCGACTCTACAATCAGTGCCATAACATATTGGCACTTTTGG
CTAATTTACCATTTTTCGAAAATTGAAGTTCGAACGAGAATGTCAATTTT
GGGCCTTTAACTTGATTGCAACGATTATTTCGATCTGGGAGGGATGTATT
GGTTTCTAGGCTAGATTTCAAGCCCTACTGGACCATTTTTGAACTTTTGG
ATCCTGGACTTATATTCATTACGTAATGTTTTATACGGAATCACGCAAAA
TAGCCCAGAGGTCTTCCACTAGTATTATTCAAATTCAAATTGACTGGCAA
ACACCCAGTCTTTCCTGGTTGAGTCAATTAAACCCAAAACCATTTATACC
AGTCTAAAGCTCTCAAAATGCTATAGAGGACTTTTAAGTGGATATTAACC
TATTTCAAGAAAATTAACGCCAATTTTGCGTTTTAACGTCTTTTCCAGTC
GATGATTTACTTAAGGAAACACTCTTGCAAAAAACTTTTTAAATACTTCA
TTCTTTGAAATAATGGACCAGGTTTGGCTGTGTCGCATAAAAAATGCCAC
GGATCCTAAAGGTTTGTCCCTTACTAAATGCATTANGCATAAAAAATGCC
ACGGATCCTAAAGGTTTGTCCCTTACTAAATGCATTTAATTATTGACATC
ATTATCTTTTGCTCCTTACAACAACAGAGTGACGAAACTGATGGAAGTGA
AACCGTGTTAAATCTTGGTGTATATCTCTCCTTATTGGATCGTGTCATTC
GTAAATATAAAGATCCATTACAATTTACCATCAAAGACGAAGAATATTGT
TCAGTGTTACGTTTGGTGGCCACCAAGAGATGTTTAAAGAAAGAAACGAC
TGAAGAATGTTATGAAAGATTAATGAAAGATAGTGAAGAATTTGAGAAAA
TATACCATGAAAGAAAAGGTAAGATACAATGTGTCGCAAAAAAGAGGACA
GATTTTTAAATAAAGTAAAATCCCTATAACTTATGCCAAATTTTATGACA
TTCCAATCTCAAAAAACTATTCAATCATCTTGGGTATTGAATAGCTATTG
ATTCAACATACCATAAAACCACTTTTTCGACCGTAGCCGCCAATTGCCGC
ACGGACATTCTTTTGTCCGTTTTACCACCCTAAAACAGTTCCAGTCTTTT
TTCGCACCTATAGACAATAGAAGAAGGTGTCAAAAAAGGATTGGATCGAG
TTTAGGGGGATGATTATATAATTAAGTGGTACGCGTCTGACCGCATCAGC
GCCACTACAGTCGAAAAGGTGTTTTGTAATCTTACTTCAATCGTTCTAAC
CACAGTAACTGTGAGATGATGAGTTTTCAGGATTTTACATACAGTTGACG
CTCTCTAATTCGATTTTCAAGGGGAATCGGATTTTCATCGAATACGGGAG
CGTATCGAATAGTAGGAAGTCTCCCTAATCCGANNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTAGGAAGTCTCCCTAATCCGATAA
ACACGAGGTAAATATCGAATTATAGAGCTGAGAAAGAAAAATATAAGCGA
GACTCGATTGGTTTGAACGCGAATCAGGAAAAATGTCTAAGTTCTTGCTG
AAAATCTAAGTTCTTCGGAAGAAAACTTTCGATATCTGCCTGTTTTGAAA
AGTTTTCAGGAATCGAATTTCGAAATTATAATTCAAACGCAAAACAATCG
AAAATTTGAATTTCGAACTCCGTCCTAAAGGCCTTTTTACACGCTAGAAA
TCGAATAAGAGAGCGAAAAACCTGCAAGGGACTTCAAATTTTCATNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
AAATTTTCATCGAAAACGGGAGCTTATCGAATAATAGAATGTCGAATAGT
AGAGCGTAGTTTATGAGAGTTTCTTAAGGAAATTTGACGGTGACTTTCAA
TTGGATCGAAAACGGGAGCTAATCGAATAGTAGAACGTCGAATTAGAGAG
CGTCCACTGTACTTTATAAAAAAATTGTCCAACTCTTTTTGGGACAAACT
ATGCACTGTACATTAACTCGAACAAGGCTTTGAATATGATCTGTACGCTC
TGTAAAAACATTCTAAAGATCTGATGATGATGATGATGATATAAAAAAAT
GCTGAAAAAGAGAACGTCTTTAGGGTCTTGACGTTCTTGTCAAAGTCATA
AACGTATATTATATTTTTCAGTTCTTTCAGAGGTTTTGAAAAACGAAGAT
TTTTGGGGCACACGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040269XLOC_040269Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064249-exon-scaffold_41-1575043694:818689..819188TCONS_00064249-exon-scaffold_41-1575043694:818689..819188Clytia hemisphaericaexon
TCONS_00064249-exon-scaffold_41-1575043694:817471..817711TCONS_00064249-exon-scaffold_41-1575043694:817471..817711Clytia hemisphaericaexon
TCONS_00064249-exon-scaffold_41-1575043694:815923..815967TCONS_00064249-exon-scaffold_41-1575043694:815923..815967Clytia hemisphaericaexon
TCONS_00064249-exon-scaffold_41-1510915933:818689..819188TCONS_00064249-exon-scaffold_41-1510915933:818689..819188Clytia hemisphaericaexon
TCONS_00064249-exon-scaffold_41-1510915933:817471..817711TCONS_00064249-exon-scaffold_41-1510915933:817471..817711Clytia hemisphaericaexon
TCONS_00064249-exon-scaffold_41-1510915933:815923..815967TCONS_00064249-exon-scaffold_41-1510915933:815923..815967Clytia hemisphaericaexon
TCONS_00064249-exon-scaffold_41-1491911889:818689..819188TCONS_00064249-exon-scaffold_41-1491911889:818689..819188Clytia hemisphaericaexon
TCONS_00064249-exon-scaffold_41-1491911889:817471..817711TCONS_00064249-exon-scaffold_41-1491911889:817471..817711Clytia hemisphaericaexon
TCONS_00064249-exon-scaffold_41-1491911889:815923..815967TCONS_00064249-exon-scaffold_41-1491911889:815923..815967Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_41supercontigscaffold_41:815923..819188 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.259475	0	0.148239	0.621384	3.17995e-07	0	0	0	0	0	0.686391	0	1.7192	1.42799	0	0.100101	0	0.673958	0.95772	0.549495	0.870793	1.59253	1.03765	2.17872	5.67471	6.4529	0.201278	0.378721
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064249 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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