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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064013 ID=TCONS_00064013|Name=TCONS_00064013|organism=Clytia hemisphaerica|type=transcript|length=1495bp
TGCATGGGAAAGCAATTAATGTAAAAAACGATATTCTTTTAACAGTAATg
tgattccaaaaatgtattaaaaaagtatgaaaagttACAATGGTGTGTAG
GTACTCGTTGTATGATATAGAACTTATGAAATCAAGCAAAATCGTCCATA
TCCGATGTGGTGTCGAATGAAGTGATGAAATCTCGGTATTTAggattttt
caccttttttcttCGGCGTAGAGTTATGCCAGAAGGACCTGGCCTTGGAG
TTGAAGTTGCAGATTGACTTGTTGTACCATTTCCAGTCTCAGAGGTACGT
ATATTGGCGATAAATTCCTTCTCTGTTAGACCAGCATATTCCAATGCCTC
TTTATTGCCCATTTTTACAAGGCTGCAGTCTGCTGGCATGTACACATGCT
TTCGTTTTAATGCTGCACGTAATTTTGTTGCCTAAAAACATAACAAATTT
ATAACgattgaaaatagaatatctctGTCTCGCTTCTATGTAAATCTAAT
TTTGACGAAGTCATGGCTTCTTTTAATTAATACCGTTTGTTATAAAAGGA
TAAAAGCAAGTTTTCAGAACTTTCTGTACTGTATAAAAAAAGTGCTTCAA
CAAAGGTTGTATCTGTTTCGAAACTTATTACCTTCTCTTTTCCATTTTTA
CTTGGTGCTTTCTTGGATTCCATGGCTGGTTGCTCAATGACCGAATCAGA
GATGTCTTCTACCTGCGCACTCGATGGTTTTTGATCTACGCTTATGTTGC
CTTTGCGTGATTGTGGTTACTCCTTTTGGCTTTTCGATGACTATGTCAAC
CAATTGCGAACCTTCTTGATCATTCATTTCATCgttgttgttgatttttg
aagacgtagcCTGAAAGAAGCTTGCTGTTTTGGAACTTTTATTTCCCTCC
ACCAAGTCAAACAACGTGGCATAGTTGTACGGCACAGTCTCGTCACTATG
GTTAGATGTCTTTTTCGTGCGTTGTAAATTCACGACTGGGGGGCTCAAGT
TTCCGTTGCTGGAAGAAGTTTGCGCATTCAACGTATTGAAACTTACATCA
TGGGTTGCAATCGGTGGTGTTTCTAAGTGAGGTGCTTCGGGCTCAATGTT
CGAGTTAACCAGCGCGGTAACATCGATATTCTGCAAACACAAGAAATAAT
ATCCACTACAAATTCCTTGGAACAGAACAAACCAATTACAGTATTAAAGA
ATTCAAACTTTATTTACCTTCAAGTATTCTTCGTTGTCGACGAACATATA
CAAAGATTCGTTGTCATCATCTATGTCTTGAAACAAATCTTTAAACGTGT
TTTCATACGTGAATTTGGTGACCATTTCTTCCACATCATAGATTTGAACT
ATTTGATTTAGTAGTTCTGCTACAACGTTCTTGCCAACATGATGGTTACG
CCATATGATTTCGCAAAGATGACCGCTAAAGTAATTAATAGCAATTGTag
caaaatattaaaataaccACGAAACCTAATGACATTACGAGTAAC Run BLAST on NCBI transcript from alignment at scaffold_406:42021..43913+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064013 ID=TCONS_00064013|Name=TCONS_00064013|organism=Clytia hemisphaerica|type=transcript|length=1893bp|location=Sequence derived from alignment at scaffold_406:42021..43913+ (Clytia hemisphaerica)
TGCATGGGAAAGCAATTAATGTAAAAAACGATATTCTTTTAACAGTAATg
tgattccaaaaatgtattaaaaaagtatgaaaagttACAATGGTGTGTAG
GTACTCGTTGTATGATATAGAACTTATGAAATCAAGCAAAATCGTCCATA
TCCGATGTGGTGTCGAATGAAGTGATGAAATCTCGGTATTTAggattttt
caccttttttcttCGGCGTAGAGTTATGCCAGAAGGACCTGGCCTTGGAG
TTGAAGTTGCAGATTGACTTGTTGTACCATTTCCAGTCTCAGAGGTACGT
ATATTGGCGATAAATTCCTTCTCTGTTAGACCAGCATATTCCAATGCCTC
TTTATTGCCCATTTTTACAAGGCTGCAGTCTGCTGGCATGTACACATGCT
TTCGTTTTAATGCTGCACGTAATTTTGTTGCCTAAAAACATAACAAATTT
ATAACgattgaaaatagaatatctctGTCTCGCTTCTATGTAAATCTAAT
TTTGACGAAGTCATGGCTTCTTTTAATTAATACCGTTTGTTATAAAAGGA
TAAAAGCAAGTTTTCAGAACTTTCTGTACTGTATAAAAAAAGTGCTTCAA
CAAAGGTTGTATCTGTTTCGAAACTTATTACCTTCTCTTTTCCATTTTTA
CTTGGTGCTTTCTTGGATTCCATGGCTGGTTGCTCAATGACCGAATCAGA
GATGTCTTCTACCTGCGCACTCGATGGTTTTTGATCTACGCTTATGTTGC
CTTTGCGGTAAGTAACGATGGCCTATGatggtattttgaaaaaatcttgt
ctcataataataattataagcatttcattttacaatttaaaaatgtattt
ataaATTTGCTAGATTTCATTAGTTCTAGCTACATTTTTCATGATTGAct
gtaaaatttatttttgttaccTTTCCTTTTGCATTTGTAGTGATTGTGGT
TACTCCTTTTGGCTTTTCGATGACTATGTCAACCAATTGCGAACCTTCTT
GATCATTCATTTCATCgttgttgttgatttttgaagacgtagcCTGAAAG
AGTGagtaaaaatgagttttttataaaaagcaatgAATAACTTGCCCATT
ATCACAAATTATTGACCTTATCACAAatagtttctttgttttcaatataA
CTTAGATCATCACAATATTCAATGGAAAATAGTATTCTGAAGTTGGACAC
ACACAACATGAACGGCAATATTCCTTTACTTTTAATAAATCATTAccttt
tcttttcctctctcAGAGCTTGCTGTTTTGGAACTTTTATTTCCCTCCAC
CAAGTCAAACAACGTGGCATAGTTGTACGGCACAGTCTCGTCACTATGGT
TAGATGTCTTTTTCGTGCGTTGTAAATTCACGACTGGGGGGCTCAAGTTT
CCGTTGCTGGAAGAAGTTTGCGCATTCAACGTATTGAAACTTACATCATG
GGTTGCAATCGGTGGTGTTTCTAAGTGAGGTGCTTCGGGCTCAATGTTCG
AGTTAACCAGCGCGGTAACATCGATATTCTGCAAACACAAGAAATAATAT
CCACTACAAATTCCTTGGAACAGAACAAACCAATTACAGTATTAAAGAAT
TCAAACTTTATTTACCTTCAAGTATTCTTCGTTGTCGACGAACATATACA
AAGATTCGTTGTCATCATCTATGTCTTGAAACAAATCTTTAAACGTGTTT
TCATACGTGAATTTGGTGACCATTTCTTCCACATCATAGATTTGAACTAT
TTGATTTAGTAGTTCTGCTACAACGTTCTTGCCAACATGATGGTTACGCC
ATATGATTTCGCAAAGATGACCGCTAAAGTAATTAATAGCAATTGTagca
aaatattaaaataaccACGAAACCTAATGACATTACGAGTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064013-exon-scaffold_406-1491911889:42021..42777 | TCONS_00064013-exon-scaffold_406-1491911889:42021..42777 | Clytia hemisphaerica | exon |
| TCONS_00064013-exon-scaffold_406-1510915933:42021..42777 | TCONS_00064013-exon-scaffold_406-1510915933:42021..42777 | Clytia hemisphaerica | exon |
| TCONS_00064013-exon-scaffold_406-1575043694:42021..42777 | TCONS_00064013-exon-scaffold_406-1575043694:42021..42777 | Clytia hemisphaerica | exon |
| TCONS_00064013-exon-scaffold_406-1491911889:42961..43071 | TCONS_00064013-exon-scaffold_406-1491911889:42961..43071 | Clytia hemisphaerica | exon |
| TCONS_00064013-exon-scaffold_406-1510915933:42961..43071 | TCONS_00064013-exon-scaffold_406-1510915933:42961..43071 | Clytia hemisphaerica | exon |
| TCONS_00064013-exon-scaffold_406-1575043694:42961..43071 | TCONS_00064013-exon-scaffold_406-1575043694:42961..43071 | Clytia hemisphaerica | exon |
| TCONS_00064013-exon-scaffold_406-1491911889:43287..43913 | TCONS_00064013-exon-scaffold_406-1491911889:43287..43913 | Clytia hemisphaerica | exon |
| TCONS_00064013-exon-scaffold_406-1510915933:43287..43913 | TCONS_00064013-exon-scaffold_406-1510915933:43287..43913 | Clytia hemisphaerica | exon |
| TCONS_00064013-exon-scaffold_406-1575043694:43287..43913 | TCONS_00064013-exon-scaffold_406-1575043694:43287..43913 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_406 | supercontig | scaffold_406:42021..43913 + |
Blast
The following BLAST results are available for this feature:
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