TCONS_00063956 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063956
Unique NameTCONS_00063956
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2640

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063956 ID=TCONS_00063956|Name=TCONS_00063956|organism=Clytia hemisphaerica|type=transcript|length=2640bp
GAGAGGATGCCTTTCTTTGTGACACAATAGAACAAAGAATTTGACTTTAA
TCTCGAatcgaaaaactattgttttaaGTTTTCCAGGCAACATAAAAAGG
AGTGATGTCAaagaattgtttcattttcacaaatcttcatgctctttcga
attaTTATATCTACGGCGTAAAAACATATTCGAGGATATAATTTAAGACT
TTATCTAAACTAATATCTTAACGAGAAGAGGCAGCTTGATcgttgaaaag
agaaaaacaaaaacaggAGATGAATTTCTCAAATTGGAATGTGACACAAT
TCACCAACTGGACCCAACCAGAGCACGGCCACAATTTAACACATGAATTC
TCCACCACTCTCGGGattttcttcattcttcttCCGATCATAGCAATCGT
GTGCAATGTCGTACTGATCGGAACTGTGGTCACAAATCGTACGCTTCATA
ACAGCACAAATGCTTTTATTATCAGTTTAGCTGTATCAGACCTGCTGATT
GCTATGTTTGTTATTCCACAAGATGCTCTATTTCTGTTGAAAGGTTACCA
TGTGGGAGGTCGTATAAGCTGTGGTTTCAAAGAAGCCTTATTCTTCCTCT
CCCTCCCTGCATCTGTTCTAAACCTACTATTGCTCACGGTCGAAAGGTAC
ACTAAGATTATCTCCCCGTACAAACACCGCTTCGTTTTCTGTAAACGAAA
CACTGCAATCATGCTCACTCTTTTATGGCTTTACACTATTGGTGTAGCTC
TGTACCCAATCTTAAATCCGTTAGTTGTGCATGGTTACCTCCCTATATTT
GTTTTCAACGGAGTGTGCTGGCTACAGTTCTCCTTAACATACGTGTTTTT
TCAACTATGCGCTAACTTTATGGCACCAACGTTTATAACGTTAATTCTAA
ATGGTTTAATGTTAGCCGTggctcaaaaacattcgaaaagcaTCAGCCAG
TTATCTATATCACAAGGAAACAAACAAAGTTGTACGTCAGTATCTTGGGT
ACACATATTAAGGAACATGAAAGCAGCAAAAACAATCGCTTTACTTGTCG
GTGTCTTCTTGACTTGTTGGTTGACGTTTCTAATCACGGCAATTATTAAC
GTACGTTGTAATGAATGTTTACGTAGAGAACTTACATGGGCTGCAAACGG
TATCAATTATACAAGTTGTGCATTAAATCCGATTATATACGGGTTATTGA
ATAGACCTATTCGAAATGCTTTGCCGTTTAAGAAGACAAGGAAATTGAAA
CATTCAGTATCAGAAGCAACGAAATTGTTGAGgaataaaattccaaaatg
tgaCATTTCTTCATCTTGGGTGTAAGACTTTGGTGTAAGAATTTATTAAT
TAATTTTGCAATGGTTTTCGtagttttatttcttttgtttgttcTGTCTC
TATCTTTTGTCTCAAAGCGAGAAACGGGCGGATCCTTTTAACGTAAAACA
ACTAAGGACACATTGTCCTGAATCCTGCTACTAATTGATTCTCAAGCTGT
TGAGAAAAATTCGAGACTAAGAttagattttttgaccaaaaaggaAAAGC
ATTAAATATTCATTTTGGATTTGCNATCAGTTTAGCTGTATCAGACCTGC
TGATTGCTATGTTTGTTATTCCACAAGATGCTCTATTTCTGTTGAAAGGT
TACCATGTGGGAGGTCGTATAAGCTGTGGTTTCAAAGAAGCGTTATTCTT
CCTCTCCCTCCCTGCATCTGTTCTAAACTTACTATTGCTCACGGTCGAAA
GGTACACTAAGATTATCTCACCGTACAAACACCGCTTCGTTTTCTGTAAA
CGAAACACTGCAATCATGCTCACTCTTTTATGGCTTTACACTATTGGTGT
AGCTCTCTACCCAATTTTAAATCCGTTAGTTGTGCATGGTTACCTCCCTA
TATTTGTTTTCAACGGAGTGTGCTGGCTACAGTTTTCCTTAACATACGTG
TTTTTTCAACTATGCGCTAACTTTATGGCACCAACGTTTATAACGTTAAT
TCTAAATGGTTTAATGTTAGCCGTggctcaaaaacattcgaaaagcaTCA
GCCAGTTATCTATATCACAAGGAAACAAACAAAGTTGTACGTCAGTATCT
TGGGTACACATATTAAGGAACATGAAAGCAGCAAAAACAATCGCTTTACT
TGTCGGTGTCTTCTTGACTTGTTGGTTGACGTTTCTAATCACGGCAATTA
TTAACGTACGTTGTAATGAATGTTTACGTAGAGAACTTACATGGGCTGCA
AACGGTATCAATTATACAAGTTGTGCATTAAATCCGATTATATACGGGTT
ATTGAATAGACCAATTCGAAATGCTTTGCCGTTTAAGAAGACAAGGAAAT
TGAAACATTCAGTATCAGAAGCAACGAAATTGTTGAGgaataaaattcca
aaatgtgaCATTTCTTCATCTTGGGTGTAAGACTTTGGTGTAAGAATTTA
TTAATTAATTTTGCAATGGTTTTCGtagttttatttcttttgtttgttcT
GTCTCTATCTTTTGTCTCAAAGCGAGAAACGGGCGGATCCTTTTAACGTA
AAACAACTAAGGACACATTGTCCTGAATCCTGCTACTAATTGATTCTCAA
GCTGTTGAGAAAAGTTCGAGACTAAGAttagattttttga
Run BLAST on NCBI

protein sequence of TCONS_00063956-protein

>TCONS_00063956-protein ID=TCONS_00063956-protein|Name=TCONS_00063956-protein|organism=Clytia hemisphaerica|type=polypeptide|length=351bp
MNFSNWNVTQFTNWTQPEHGHNLTHEFSTTLGIFFILLPIIAIVCNVVLI
GTVVTNRTLHNSTNAFIISLAVSDLLIAMFVIPQDALFLLKGYHVGGRIS
CGFKEALFFLSLPASVLNLLLLTVERYTKIISPYKHRFVFCKRNTAIMLT
LLWLYTIGVALYPILNPLVVHGYLPIFVFNGVCWLQFSLTYVFFQLCANF
MAPTFITLILNGLMLAVAQKHSKSISQLSISQGNKQSCTSVSWVHILRNM
KAAKTIALLVGVFLTCWLTFLITAIINVRCNECLRRELTWAANGINYTSC
ALNPIIYGLLNRPIRNALPFKKTRKLKHSVSEATKLLRNKIPKCDISSSW
V
Run BLAST on NCBI

transcript from alignment at scaffold_404:729736..735576-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063956 ID=TCONS_00063956|Name=TCONS_00063956|organism=Clytia hemisphaerica|type=transcript|length=5841bp|location=Sequence derived from alignment at scaffold_404:729736..735576- (Clytia hemisphaerica)
GAGAGGATGCCTTTCTTTGTGACACAATAGAACAAAGAATTTGACTTTAA TCTCGAATCGAAAAACTATTGTTTTAAGTTTTCCAGGCAACATAAAAAGG AGTGATGTCAAAGAATTGTTTCATTTTCACAAATCTTCATGCTCTTTCGA ATTATTATATCTACGGCGTAAAAACATATTCGAGGATATAATTTAAGACT TTATCTAAACTAATATCTTAACGAGAAGAGGCAGCTTGATCGTTGAAAAG AGAAAAACAAAAACAGGTATATACATCGTAAACATTTTGATATTTTTCTA GGTGAAGATGAAGACCTTCAGGACTTGATGGAGAACATCATTTTTCGATT TAGGGACAGGCTCACAAATTTCGAAATTTTACACCTTAGCCAGATGGGCC ATATGTAAAGCCCTCCTGTAATACCCAGTTTAAATTTGAATTTGTCTTTT TTTCACTGAAATAGTACTTGTTTTTTATCTAAGTAGGAGTGGGCTGTAGG AAGGTATTTCTCCAACCACACCCACCCCCAATGAACTTAACACCTAGCTC GGTTGGGAATTATAACTTTTATCAAAAAAAGAAAAAGTGTGCTGGCTTCT TTTGTGAAATTTGCATTGTACTCACCCCCAAATAGCTGTCAGATTTAGAT AAAATTTGTTTTTCGACCCAGTCGGCCAAACTGACTATCAATTTGTAGGA AAATAGGAACATTTTAACTTTTTGCACCTCAAAACATTGAAATTTGGTCA ATTTAGTCCCAAGTAGGGTCATAAAATTCAAAAAGTTTTACTATTTTTCT CATTTTTAGTCCTGCTAAGGGTCTGAGGTTCGAAAGTCNGGGGACGTCTA TTCGGGACCTTAGAGTAGCTCGGTTGGGAATTATAACTTTTATCAAAAAA AGAAAAAGTGTGCTGGCTTCTTTTGTGAAATTTGCATTGTACTCACCCCC AAATAGCTGTCAGATTTAGATAAAATTTGTTTTTCGACCCAGTCGGCCAA ACTGACTATCAATTTGTAGGAAAATAGGAACATTTTAACTTTTTGCACCT CAAAACATTGAAATTTGGTCAATTTAGTCCCAAGTAGGGTCATAAAATTC AAAAAGTTTTACTATTTTTCTCATTTTTAGTCCTGCTAAGGGTCTGAGGT TCGAAAGTCCCGCGTCAACCCGCAACTCTATAGACAGGAACCCGTCTGCG TATTTTTTTTTAATCTGATGAATACTTGACGGGTCGNNATAGCATGGATC TCCAGGCTAGCAACTCTAGTACCTCAAATATTAGAGAATTTATAGTTTAA TACCCAGTAAATCACAGAACTTCTAAAATGTGTCTTGTACTTGTACGTAA TAAAGACTAGAAGACCTTTGATTTAAGGTCATTGGCCTTCAAAAACAAAA ATATTGCTTTCAAATCCTTTTCAAAGTTAGTTACTACGGTTGCTAGTCTA GTTACTACGCAGACCTTAAATATTCCATGTCCTTTTCTCTCTTCAAAACC GATCGCCCGCTCTTACTGAATGACTCCCTAAAAGAAAGAACAGGCTCTTA GCTTTCCAGTCTTGAACGAGCTTCTTATAGATAAGAATTGAGATAAGAAA TTTTTTGAATACCTAATCTTACAGAAAGTGCAGACTCTCTTTAGGGAGAT TAGAGGAATAAAATTTGCGAAGACAGCACAGCATAATATTCTTTCCTAAA ATATTAGATAACAGAGTTCCATGAGCGAGGCCCCCCCAGCGCACCCAAAT TTCACGCATTCACGCAAAAATGTTTCGCAATTCACGCATTCACGCAAGTT TTTCTCGAAATTCACGCAAACCCAATTTTTTGGGAAATCGGGAAAATTTT CGGAAAAAAATCGGGGAAAATGTCAAAAATAGAGGTCTTGCACATTTCAC TAAGTTACGTAATTTACGTAATTTCCGCCATTATGGAGTAAAACGTTCGA TTTGTATAAAAAAGTATGACAAGGCTGTACTCGAGATATTATTCGACCGG ATCTGGTCATGCACTTGAGAAAGACTTAACTCAGTAGTAATTTTTCCCTG TAGACCTGACTATAAAACACCGTGTTTGATAGCGTCATAAGAAGCCCTCA AATAGAAAGCGCTACGTAATTTTTCAACTTTAATCACATGCTATCACGCA AAATATTTGATTCTTCTAACTTGTCACGATCGTTTGGAAAAGGTGAAGCT TCTGCAGTTAACGTATCACGATAGTAAGTGAAAGGATATGCGCCGCAGGC GAATTTTTGTACAAAAAATAGCTTAAACATTATCAAAAATAGATCAAACA AACTCGGGTATGACACCATGGTGCTTAGCTCAGGGTTTAAGCAGAGAGGA AATTTTTGTATTTTTGTCACTCTCGTTTAATTTCCTAACGTGGAGGGGCC GAAAACATAGTGACTAAGGAGGAGCAACCATGTTTTGCGCCGACAGGAGA AAATTTCTATTTTAACCCTCTGATGTGCTTAAATACGACTCCATTTCAGA CTAATTTTGCCAAGAAATCAGGTTATCGAAAGTCTACATCATGGGTAAAA GTTTCTTTGAAATAAGTTTCTTTTTATTTGCAAAAACGTGGTGAAGTCAT GGCCGCCTCCTTCCCCCAGTGACTCTAGCCCTGGCTGGCCATGACCCTGG CGCTGGATCACTCATCATTCATAAACATTGTTTTATCTTAAACAAACACT TTCAATGGGGCAAATTAGAGTTATTTAAGATTCGAGGGCCAATACATGTN NTCTAGATTGCTAGAAAGCGCATCTAAATCATGAATCGTTTTATAAAATA GAGAATTTGAAAGTTGCTGATTTTTTTGTACACCTTCACCTGGCATCCCT TAAAATTTGGAATAGGTGCGCACCTTGGGGTTTTCTACAAACTGTGAAAA GGAAAAATTCACGCGTTCGCGCAAAAAACAGGGCAGATTCACGCATTCAC GCAATAGAAATATGGATTTTCACGTTCACGCAAGTTTTTTCAATTCACGC ATTCACGCAATTTTTTTTCGATTTTCACGCATTCACGCAACCAAAAAAGC CCATTCACGCATTCACGCAAACCGCTGGGGGGGCCCCATGAGCTGTAAAA GCTCAAAATTTAGATTTAAGTTAACCACAGACAAAACAATAAAACGGGGA AAAATGAAAAACCGAGTTGAAAGTGAGGTTTCGCTTCGAGTCATCTTTTG TTGACATATTTGGACTAAATACAGTGTCCGGGTAAAGGGAATGGTATTAG TAAAAGTAAAAACGCATCACAATTTATATTAATTGATATCGGATTTCTTT CGTTTTGATCTATTAAAAGATTCTAAATCCTTAACCAATCCAGTGAGATT CTATACATAAATTTGCTCCACTTTAACCAATTAAAATGAATGACCTTAGA TATAGAACAAGAAGTGATATATTCGCGCTATCAAATAATGTCAAAATAAT TTTCACTTTATTTTCAGGAGATGAATTTCTCAAATTGGAATGTGACACAA TTCACCAACTGGACCCAACCAGAGCACGGCCACAATTTAACACATGAATT CTCCACCACTCTCGGGATTTTCTTCATTCTTCTTCCGATCATAGCAATCG TGTGCAATGTCGTACTGATCGGAACTGTGGTCACAAATCGTACGCTTCAT AACAGCACAAATGCTTTTATTATCAGTTTAGCTGTATCAGACCTGCTGAT TGCTATGTTTGTTATTCCACAAGATGCTCTATTTCTGTTGAAAGGTTACC ATGTGGGAGGTCGTATAAGCTGTGGTTTCAAAGAAGCCTTATTCTTCCTC TCCCTCCCTGCATCTGTTCTAAACCTACTATTGCTCACGGTCGAAAGGTA CACTAAGATTATCTCCCCGTACAAACACCGCTTCGTTTTCTGTAAACGAA ACACTGCAATCATGCTCACTCTTTTATGGCTTTACACTATTGGTGTAGCT CTGTACCCAATCTTAAATCCGTTAGTTGTGCATGGTTACCTCCCTATATT TGTTTTCAACGGAGTGTGCTGGCTACAGTTCTCCTTAACATACGTGTTTT TTCAACTATGCGCTAACTTTATGGCACCAACGTTTATAACGTTAATTCTA AATGGTTTAATGTTAGCCGTGGCTCAAAAACATTCGAAAAGCATCAGCCA GTTATCTATATCACAAGGAAACAAACAAAGTTGTACGTCAGTATCTTGGG TACACATATTAAGGAACATGAAAGCAGCAAAAACAATCGCTTTACTTGTC GGTGTCTTCTTGACTTGTTGGTTGACGTTTCTAATCACGGCAATTATTAA CGTACGTTGTAATGAATGTTTACGTAGAGAACTTACATGGGCTGCAAACG GTATCAATTATACAAGTTGTGCATTAAATCCGATTATATACGGGTTATTG AATAGACCTATTCGAAATGCTTTGCCGTTTAAGAAGACAAGGAAATTGAA ACATTCAGTATCAGAAGCAACGAAATTGTTGAGGAATAAAATTCCAAAAT GTGACATTTCTTCATCTTGGGTGTAAGACTTTGGTGTAAGAATTTATTAA TTAATTTTGCAATGGTTTTCGTAGTTTTATTTCTTTTGTTTGTTCTGTCT CTATCTTTTGTCTCAAAGCGAGAAACGGGCGGATCCTTTTAACGTAAAAC AACTAAGGACACATTGTCCTGAATCCTGCTACTAATTGATTCTCAAGCTG TTGAGAAAAATTCGAGACTAAGATTAGATTTTTTGACCAAAAAGGAAAAG CATTAAATATTCATTTTGGATTTGCNATCAGTTTAGCTGTATCAGACCTG CTGATTGCTATGTTTGTTATTCCACAAGATGCTCTATTTCTGTTGAAAGG TTACCATGTGGGAGGTCGTATAAGCTGTGGTTTCAAAGAAGCGTTATTCT TCCTCTCCCTCCCTGCATCTGTTCTAAACTTACTATTGCTCACGGTCGAA AGGTACACTAAGATTATCTCACCGTACAAACACCGCTTCGTTTTCTGTAA ACGAAACACTGCAATCATGCTCACTCTTTTATGGCTTTACACTATTGGTG TAGCTCTCTACCCAATTTTAAATCCGTTAGTTGTGCATGGTTACCTCCCT ATATTTGTTTTCAACGGAGTGTGCTGGCTACAGTTTTCCTTAACATACGT GTTTTTTCAACTATGCGCTAACTTTATGGCACCAACGTTTATAACGTTAA TTCTAAATGGTTTAATGTTAGCCGTGGCTCAAAAACATTCGAAAAGCATC AGCCAGTTATCTATATCACAAGGAAACAAACAAAGTTGTACGTCAGTATC TTGGGTACACATATTAAGGAACATGAAAGCAGCAAAAACAATCGCTTTAC TTGTCGGTGTCTTCTTGACTTGTTGGTTGACGTTTCTAATCACGGCAATT ATTAACGTACGTTGTAATGAATGTTTACGTAGAGAACTTACATGGGCTGC AAACGGTATCAATTATACAAGTTGTGCATTAAATCCGATTATATACGGGT TATTGAATAGACCAATTCGAAATGCTTTGCCGTTTAAGAAGACAAGGAAA TTGAAACATTCAGTATCAGAAGCAACGAAATTGTTGAGGAATAAAATTCC AAAATGTGACATTTCTTCATCTTGGGTGTAAGACTTTGGTGTAAGAATTT ATTAATTAATTTTGCAATGGTTTTCGTAGTTTTATTTCTTTTGTTTGTTC TGTCTCTATCTTTTGTCTCAAAGCGAGAAACGGGCGGATCCTTTTAACGT AAAACAACTAAGGACACATTGTCCTGAATCCTGCTACTAATTGATTCTCA AGCTGTTGAGAAAAGTTCGAGACTAAGATTAGATTTTTTGA

Coding sequence (CDS) from alignment at scaffold_404:729736..735576-

>TCONS_00063956 ID=TCONS_00063956|Name=TCONS_00063956|organism=Clytia hemisphaerica|type=CDS|length=1056bp|location=Sequence derived from alignment at scaffold_404:729736..735576- (Clytia hemisphaerica)
ATGAATTTCTCAAATTGGAATGTGACACAATTCACCAACTGGACCCAACC
AGAGCACGGCCACAATTTAACACATGAATTCTCCACCACTCTCGGGATTT
TCTTCATTCTTCTTCCGATCATAGCAATCGTGTGCAATGTCGTACTGATC
GGAACTGTGGTCACAAATCGTACGCTTCATAACAGCACAAATGCTTTTAT
TATCAGTTTAGCTGTATCAGACCTGCTGATTGCTATGTTTGTTATTCCAC
AAGATGCTCTATTTCTGTTGAAAGGTTACCATGTGGGAGGTCGTATAAGC
TGTGGTTTCAAAGAAGCCTTATTCTTCCTCTCCCTCCCTGCATCTGTTCT
AAACCTACTATTGCTCACGGTCGAAAGGTACACTAAGATTATCTCCCCGT
ACAAACACCGCTTCGTTTTCTGTAAACGAAACACTGCAATCATGCTCACT
CTTTTATGGCTTTACACTATTGGTGTAGCTCTGTACCCAATCTTAAATCC
GTTAGTTGTGCATGGTTACCTCCCTATATTTGTTTTCAACGGAGTGTGCT
GGCTACAGTTCTCCTTAACATACGTGTTTTTTCAACTATGCGCTAACTTT
ATGGCACCAACGTTTATAACGTTAATTCTAAATGGTTTAATGTTAGCCGT
GGCTCAAAAACATTCGAAAAGCATCAGCCAGTTATCTATATCACAAGGAA
ACAAACAAAGTTGTACGTCAGTATCTTGGGTACACATATTAAGGAACATG
AAAGCAGCAAAAACAATCGCTTTACTTGTCGGTGTCTTCTTGACTTGTTG
GTTGACGTTTCTAATCACGGCAATTATTAACGTACGTTGTAATGAATGTT
TACGTAGAGAACTTACATGGGCTGCAAACGGTATCAATTATACAAGTTGT
GCATTAAATCCGATTATATACGGGTTATTGAATAGACCTATTCGAAATGC
TTTGCCGTTTAAGAAGACAAGGAAATTGAAACATTCAGTATCAGAAGCAA
CGAAATTGTTGAGGAATAAAATTCCAAAATGTGACATTTCTTCATCTTGG
GTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040081XLOC_040081Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063956-proteinTCONS_00063956-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063956-exon-scaffold_404-1575043694:735311..735576TCONS_00063956-exon-scaffold_404-1575043694:735311..735576Clytia hemisphaericaexon
TCONS_00063956-exon-scaffold_404-1575043694:729736..732109TCONS_00063956-exon-scaffold_404-1575043694:729736..732109Clytia hemisphaericaexon
TCONS_00063956-exon-scaffold_404-1510915933:735311..735576TCONS_00063956-exon-scaffold_404-1510915933:735311..735576Clytia hemisphaericaexon
TCONS_00063956-exon-scaffold_404-1510915933:729736..732109TCONS_00063956-exon-scaffold_404-1510915933:729736..732109Clytia hemisphaericaexon
TCONS_00063956-exon-scaffold_404-1491911889:735311..735576TCONS_00063956-exon-scaffold_404-1491911889:735311..735576Clytia hemisphaericaexon
TCONS_00063956-exon-scaffold_404-1491911889:729736..732109TCONS_00063956-exon-scaffold_404-1491911889:729736..732109Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_404supercontigscaffold_404:729736..735576 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0583756 0 0.0330479 0 0 0 0.318967 0.404005 0.147576 0.243729 0.147856 0.379058 0 0 0 0.0177862 0.230067 0.179666 0 0.0162339 1.07238 0.805248 0.0669323 0.486809 0.595415 0.391553 0.420233 0.277633 0.0161981 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
BLAST of TCONS_00063956 vs. Swiss-Prot (Human)
Match: ADA1A (Alpha-1A adrenergic receptor OS=Homo sapiens GN=ADRA1A PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 1.107e-22
Identity = 86/347 (24.78%), Postives = 164/347 (47.26%), Query Frame = 3
Query:  270 MNFSNWNVTQFTNWTQPEHGHNLTHEFSTTLGIFFILLPIIAIVCNVVLIGTVVTNRTLHNSTNAFIISLAVSDLLIAMFVIPQDALFLLKGYHVGGRISCGFKEALFFXXXXXXXXXXXXXTVERYTKIISPYKHRFVFCKRNTAIMLTLLWLYTIGVALYPILNPLVVHGYLPIFVFNGVCWLQFSLTYVFFQLCANFMAPTFITLILNGLMLAVAQKHSKSI-SQLSISQGNKQSCT------------------------SVSWVHILRNMKAAKTIALLVGVFLTCWLTFLITAII-----NVRCNECLRRELTWAANGINYTSCALNPIIYGLLNRPIRNA 1220
            M F + N +  +N TQP    N++   +  LG+    L +  ++ N+++I +V  +R LH+ T+ +I++LAV+DLL+   V+P  A+F + GY   GR+ C    A+  L   AS++ L +++++RY  +  P ++  +  +R   + L  +W  ++ +++ P+          P      +C +     YV F    +F  P  I L++   +  VA++ S+ + S L   + + +  T                        SV  +   R  KAAKT+ ++VG F+ CWL F +   I     + + +E + + + W    + Y +  +NPIIY   ++  + A
Sbjct:    1 MVFLSGNASDSSNCTQPPAPVNISK--AILLGVILGGLILFGVLGNILVILSVACHRHLHSVTHYYIVNLAVADLLLTSTVLPFSAIFEVLGYWAFGRVFCNIWAAVDVLCCTASIMGLCIISIDRYIGVSYPLRYPTIVTQRRGLMALLCVWALSLVISIGPLFG-----WRQPAPEDETICQINEEPGYVLFSALGSFYLPLAIILVMYCRVYVVAKRESRGLKSGLKTDKSDSEQVTLRIHRKNAPAGGSGMASAKTKTHFSVRLLKFSREKKAAKTLGIVVGCFVLCWLPFFLVMPIGSFFPDFKPSETVFKIVFW----LGYLNSCINPIIYPCSSQEFKKA 336          
The following BLAST results are available for this feature:
BLAST of TCONS_00063956 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ADA1A1.107e-2224.78Alpha-1A adrenergic receptor OS=Homo sapiens GN=AD... [more]
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