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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063960 ID=TCONS_00063960|Name=TCONS_00063960|organism=Clytia hemisphaerica|type=transcript|length=1186bp
ATTTCACATGTCACGTCATTCTACAGTTGAGTCGGTTGAATCTGGATATT
CTGGGGTTTGTTGGGGGTTGCTGGTAAATATGTCTTTCAAAGAGGAGTAT
TTGACTGTTTCAAGTATTTGCTGAAACTTTTCTTGAGGCAAATTGATCTT
TGCACGATTGCTTTTTAAGTCCATTATTTTGATGAGGATCTGAGTAAGCA
AAAGATGGTTTTTcacttaagaaaaataaattttattatgCAAcataata
aatttcaaatcaaggAGCTTTCTTGCAGGGTATATACCCTATTTGAACTA
ATTTTTNcttaagaaaaataaattttattatgCAAcataataaatttcaa
atcaaggAGCTTTCTTGCAGGGTATATACCCTATTTGAACTAATTTTTAC
GGCTGAAAAAAAATATGCGAAAAATTACATTAGTTGCGGAttttaatttt
cgcgtttttttcattctcaaattttcgcgggtttaaTAATTTTCACGCTT
Tcggccttttttggaaaaatttcttttatttctctcctagggatttttca
aaattttcgttaaaattgcaaaaagttgtatttcgcgggaattaattttc
gcggttttaaactctcaaaattttagcGTGGGCTCAAGTTTGCatgattt
tgacgaaaaaccgcgaaaaacacttaaattaattcccgcaaaaattagtt
gcAATAAGGAATTCCATGCTAGAAAATTGGTATAGTTTTTATTGGGGTGG
TAGCTAGGTAATCTCAAATAACTTTGTTTGAGTCACTCAtattgaaaaat
tgttctgttttcCTGCTTCGCCCACCTGCATCATATTTTCCACTGATTCT
CTGGTATCATTCTGCCTTTAAAGTTTAAAACGAGAAGTTCAATGATTCTG
CTGAAAGGAGTTATCTGATGATTCTATCATATTTTCCACTGATTCTCTGG
TATCATTCTGCCTTTAAAGTTTAAAACGAGAAGTTCAATGATTCTGCTGA
AAGAAGTTATCTGATGATTCTCTTACAAAGAATCgctcgctcactcgctg
gctggctggctgaaagtgaaagtagtgaaaTTGAAACCGAAACTGTCAGT
CAGCAAACACAGGCGCAGACGCCTATacccgttcttctatatctcagcct
tAAATGATTGCttgttgcaaaaaaaaattgaagaaN Run BLAST on NCBI transcript from alignment at scaffold_404:79338..80523 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063960 ID=TCONS_00063960|Name=TCONS_00063960|organism=Clytia hemisphaerica|type=transcript|length=1186bp|location=Sequence derived from alignment at scaffold_404:79338..80523 (Clytia hemisphaerica)
NttcttcaatttttttttgcaacaaGCAATCATTTaaggctgagatatag
aagaacgggtATAGGCGTCTGCGCCTGTGTTTGCTGACTGACAGTTTCGG
TTTCAAtttcactactttcactttcagccagccagccagcgagtgagcga
gcGATTCTTTGTAAGAGAATCATCAGATAACTTCTTTCAGCAGAATCATT
GAACTTCTCGTTTTAAACTTTAAAGGCAGAATGATACCAGAGAATCAGTG
GAAAATATGATAGAATCATCAGATAACTCCTTTCAGCAGAATCATTGAAC
TTCTCGTTTTAAACTTTAAAGGCAGAATGATACCAGAGAATCAGTGGAAA
ATATGATGCAGGTGGGCGAAGCAGgaaaacagaacaatttttcaataTGA
GTGACTCAAACAAAGTTATTTGAGATTACCTAGCTACCACCCCAATAAAA
ACTATACCAATTTTCTAGCATGGAATTCCTTATTgcaactaatttttgcg
ggaattaatttaagtgtttttcgcggtttttcgtcaaaatcatGCAAACT
TGAGCCCACgctaaaattttgagagtttaaaaccgcgaaaattaattccc
gcgaaatacaactttttgcaattttaacgaaaattttgaaaaatccctag
gagagaaataaaagaaatttttccaaaaaaggccgAAAGCGTGAAAATTA
ttaaacccgcgaaaatttgagaatgaaaaaaacgcgaaaattaaaaTCCG
CAACTAATGTAATTTTTCGCATATTTTTTTTCAGCCGTAAAAATTAGTTC
AAATAGGGTATATACCCTGCAAGAAAGCTccttgatttgaaatttattat
gTTGcataataaaatttatttttcttaagNAAAAATTAGTTCAAATAGGG
TATATACCCTGCAAGAAAGCTccttgatttgaaatttattatgTTGcata
ataaaatttatttttcttaagtgAAAAACCATCTTTTGCTTACTCAGATC
CTCATCAAAATAATGGACTTAAAAAGCAATCGTGCAAAGATCAATTTGCC
TCAAGAAAAGTTTCAGCAAATACTTGAAACAGTCAAATACTCCTCTTTGA
AAGACATATTTACCAGCAACCCCCAACAAACCCCAGAATATCCAGATTCA
ACCGACTCAACTGTAGAATGACGTGACATGTGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063960-exon-scaffold_404-1491911889:79338..80523 | TCONS_00063960-exon-scaffold_404-1491911889:79338..80523 | Clytia hemisphaerica | exon |
| TCONS_00063960-exon-scaffold_404-1510915933:79338..80523 | TCONS_00063960-exon-scaffold_404-1510915933:79338..80523 | Clytia hemisphaerica | exon |
| TCONS_00063960-exon-scaffold_404-1575043694:79338..80523 | TCONS_00063960-exon-scaffold_404-1575043694:79338..80523 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_404 | supercontig | scaffold_404:79338..80523 . |
Blast
The following BLAST results are available for this feature:
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