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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063852 ID=TCONS_00063852|Name=TCONS_00063852|organism=Clytia hemisphaerica|type=transcript|length=2811bp
GTGGATTTCGACAAAAGACGATAGGTGAAAGTCTTCTCAAACAGTTCAAT
AACCAGAGTTTATTGGTATTACAAAACACACTCAAAAGGTATgtacatct
tttagattaaaATCGAGAGAGATTTCTGTATATACATGACATGACATTCT
GTGGCACTTGTTCAATTAAcagtataaaataaaacaaagaaaactctatt
tataaatttctaaataaaataaacaaaacgttgtataggccatttcacag
tcgaaatggatcaagggtaatcaggactgattgcgccccgATAACGGTTT
ACCGTTGGTttgacgcaaaaatcttcaaaatttttctaaacTTTGGACCG
ATGTAGTAATTCGTCAttagtcctgattacccattacgctttgcgactgt
gaaatgaccTATATAAATCCTTGAAAATGATTTAATTGAAAGAGGTTGGT
TGTACTACTTGCAAATATTATGATTGATATAAATCTTTCCCAGATCATAA
TACATAAGAAAAAATATGGCTCAAAATTGAAATTGCGAATTGctaaaaag
gaaatatttacaggcTATGTATGTACAATGAttacaaaaaatcacaaaaa
aggtCGTGTAGGTTTTAAAACGTGTTTACTGTGCTGGTTTTGTAAAAGCT
TGTTGTCTTTTCTGCACGATGGGTGTCGGTGGTGTTCGAGGTCGTTTAAA
ATGAAGATATTGTAAATCATGTAAAAGAATAATCTGTAAATTGGACCAAA
ACATCTGCCGCTATAAGAAGTGATGTAGTAAAACCACATAAAAAGCCTTG
TGAATATGTATACTGATACTTTGTTGGCTGGTAAACTATACTGTGGCTTT
CCCACTGCCAGGTGTAGATAACATAACTTAATAATTGCGTCGTTTGGTAG
GATTTCTGGATTCGGCATAGTCATTGTGCAGTAATTGTCAGCTATCGTGA
TCAGGTCTTTTTCCGTGAGCCTTCGTTGTTCGCAACTATCTCTTATCATA
GGTAGATACCTTGAAAATTCATCAGAGAATAACCTCTCCCAGACTGTATA
TTTTAGCTCAGTGTGACATTTGATAACATATTTCCAAACTTTCATATAGC
ATTTTCTCATTGATCGGTAACTTGTGTCTATAGTGCTCATTGTTGTCCCA
CGTATATAGTTTACACTCCTCTCCAAGCTTTTTTGTTCCTTGAGAAGACG
CTCGTAGTAAAAAGAGTATCCATCGTTAAAATGTCTATTGTGTCTTGTAA
AGAAGTCACGTAGAAATTCAGGGCTGTTTAACTTTTCCAACTCAGCTGAA
AGGTCGGGCTTTATGAAATTGATTCTCACACAATTTTTCTTGGATTTGTG
TAACGTTTTCATGAAAGTAAACCATACGTGGGCATCTGGTTGTTCGAGTA
AATTATCTTGAACCGATCTAAGTTGACCGAGCCATAAATTGAACTCGTGA
TAACTTAAAGCGTCTGCATCGTTATCCCTGAGTTGTTCGGGGACtagagt
aaaagaaaaaaatcttttcagctCGAGCACTGCTTGTAGATCATGTCGAT
GGAGAAAATCTATTGGTCGATCTGCTATTTCAGTTGCAAcgattttgcat
ttttgtaaaaaatcttcGGAGTAGCCGTCCAATATATTCATCTCATCCAT
GAAGTAGCATGATAGGGTCCCATTTTTGAGACACGTGGAAAGTTCTTTAT
AATATACTGAAATGATGCCGACGATCTCACCATTGCTTTCATAATGCTCC
CATTCTGTTTTGGAAATCAAATCttgtattttgaatttgattgttttcaa
taCGTACGAGGGTAAATGGCGTTCGGTTATGGAGTCCTCCAATGCTTTGA
ACTGTTGatagaaaatcatttttgaaacgAGATAGCATTTCTTTTGGAAC
CTAGTCAATGCCGCTGACAAAGTTTTCTCGGCAACGGAAAACGAGATACG
CCACTCGTTTGATTTGATATCTACCCGACGATGTATCGGTTTCGGGACCA
GGTGACATCCGTCttgtttgattttattcaacGTTTCCTGTGATATCCAA
TCATGTTTTTCGTTGAACCATCTTGACGCACATGCTGGCCAAAAATGCAA
TTTAAAGCAAAGTACAAAGTCCATAGAAGAGGACCACATTTTTGAAGGGA
GTTCAGTATTTCCAATTGCTTGTATTATTGTAGGTGGCATACCTACTCGT
TCTGCGTCGGcattcttttttgcttttacaAGATTTGCAATTCCTTTTTG
TAAGGCATCTAAATCGGCCATCGTGTGAGTGTTCAAAGACGGCCCTTGGA
CCGTACTGCTCACCTCTACCggggatttctcaaaaattgctTCCTTCCTA
TGTTGCATTATCTCAGTTGGtagtctaaaatatttttctgataaAGGATG
AAGCCATTCGTACATCACAGATTCGTGTGCGGTCAAGCATTGATACAATT
CATCGCATGAGCGTAATCTGAAATAACCAGGATAGCCATCAATACTTTCT
AAGAATGTCTGTGATTCTGATAATGGGATATGTCCTATAGTATTCATTTC
ATCCAGCTCGAGTTCATTAGTTGCCATAAAGCGTGGAATAAATCCACCCT
CGGTAACACTTCCACTTAGAAAGGATTCACCCTCTTTAACATATGACGAA
CTCCTCTCTCGAACTAGCTTGCTGATTTCAGTATCAAGCTCAAAGATGGT
TTCGAGGTAGAAAGTGAAATCATTTTCGGTTGCCATTTTTGTGTTCTCTG
CTAGTTCTTAAATGTCGAAGAGTTCTGTTTATATAGCGTCTGTTCTCTGC
TATCATGTCAG Run BLAST on NCBI transcript from alignment at scaffold_404:20179..22989+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063852 ID=TCONS_00063852|Name=TCONS_00063852|organism=Clytia hemisphaerica|type=transcript|length=2811bp|location=Sequence derived from alignment at scaffold_404:20179..22989+ (Clytia hemisphaerica)
GTGGATTTCGACAAAAGACGATAGGTGAAAGTCTTCTCAAACAGTTCAAT
AACCAGAGTTTATTGGTATTACAAAACACACTCAAAAGGTATgtacatct
tttagattaaaATCGAGAGAGATTTCTGTATATACATGACATGACATTCT
GTGGCACTTGTTCAATTAAcagtataaaataaaacaaagaaaactctatt
tataaatttctaaataaaataaacaaaacgttgtataggccatttcacag
tcgaaatggatcaagggtaatcaggactgattgcgccccgATAACGGTTT
ACCGTTGGTttgacgcaaaaatcttcaaaatttttctaaacTTTGGACCG
ATGTAGTAATTCGTCAttagtcctgattacccattacgctttgcgactgt
gaaatgaccTATATAAATCCTTGAAAATGATTTAATTGAAAGAGGTTGGT
TGTACTACTTGCAAATATTATGATTGATATAAATCTTTCCCAGATCATAA
TACATAAGAAAAAATATGGCTCAAAATTGAAATTGCGAATTGctaaaaag
gaaatatttacaggcTATGTATGTACAATGAttacaaaaaatcacaaaaa
aggtCGTGTAGGTTTTAAAACGTGTTTACTGTGCTGGTTTTGTAAAAGCT
TGTTGTCTTTTCTGCACGATGGGTGTCGGTGGTGTTCGAGGTCGTTTAAA
ATGAAGATATTGTAAATCATGTAAAAGAATAATCTGTAAATTGGACCAAA
ACATCTGCCGCTATAAGAAGTGATGTAGTAAAACCACATAAAAAGCCTTG
TGAATATGTATACTGATACTTTGTTGGCTGGTAAACTATACTGTGGCTTT
CCCACTGCCAGGTGTAGATAACATAACTTAATAATTGCGTCGTTTGGTAG
GATTTCTGGATTCGGCATAGTCATTGTGCAGTAATTGTCAGCTATCGTGA
TCAGGTCTTTTTCCGTGAGCCTTCGTTGTTCGCAACTATCTCTTATCATA
GGTAGATACCTTGAAAATTCATCAGAGAATAACCTCTCCCAGACTGTATA
TTTTAGCTCAGTGTGACATTTGATAACATATTTCCAAACTTTCATATAGC
ATTTTCTCATTGATCGGTAACTTGTGTCTATAGTGCTCATTGTTGTCCCA
CGTATATAGTTTACACTCCTCTCCAAGCTTTTTTGTTCCTTGAGAAGACG
CTCGTAGTAAAAAGAGTATCCATCGTTAAAATGTCTATTGTGTCTTGTAA
AGAAGTCACGTAGAAATTCAGGGCTGTTTAACTTTTCCAACTCAGCTGAA
AGGTCGGGCTTTATGAAATTGATTCTCACACAATTTTTCTTGGATTTGTG
TAACGTTTTCATGAAAGTAAACCATACGTGGGCATCTGGTTGTTCGAGTA
AATTATCTTGAACCGATCTAAGTTGACCGAGCCATAAATTGAACTCGTGA
TAACTTAAAGCGTCTGCATCGTTATCCCTGAGTTGTTCGGGGACtagagt
aaaagaaaaaaatcttttcagctCGAGCACTGCTTGTAGATCATGTCGAT
GGAGAAAATCTATTGGTCGATCTGCTATTTCAGTTGCAAcgattttgcat
ttttgtaaaaaatcttcGGAGTAGCCGTCCAATATATTCATCTCATCCAT
GAAGTAGCATGATAGGGTCCCATTTTTGAGACACGTGGAAAGTTCTTTAT
AATATACTGAAATGATGCCGACGATCTCACCATTGCTTTCATAATGCTCC
CATTCTGTTTTGGAAATCAAATCttgtattttgaatttgattgttttcaa
taCGTACGAGGGTAAATGGCGTTCGGTTATGGAGTCCTCCAATGCTTTGA
ACTGTTGatagaaaatcatttttgaaacgAGATAGCATTTCTTTTGGAAC
CTAGTCAATGCCGCTGACAAAGTTTTCTCGGCAACGGAAAACGAGATACG
CCACTCGTTTGATTTGATATCTACCCGACGATGTATCGGTTTCGGGACCA
GGTGACATCCGTCttgtttgattttattcaacGTTTCCTGTGATATCCAA
TCATGTTTTTCGTTGAACCATCTTGACGCACATGCTGGCCAAAAATGCAA
TTTAAAGCAAAGTACAAAGTCCATAGAAGAGGACCACATTTTTGAAGGGA
GTTCAGTATTTCCAATTGCTTGTATTATTGTAGGTGGCATACCTACTCGT
TCTGCGTCGGcattcttttttgcttttacaAGATTTGCAATTCCTTTTTG
TAAGGCATCTAAATCGGCCATCGTGTGAGTGTTCAAAGACGGCCCTTGGA
CCGTACTGCTCACCTCTACCggggatttctcaaaaattgctTCCTTCCTA
TGTTGCATTATCTCAGTTGGtagtctaaaatatttttctgataaAGGATG
AAGCCATTCGTACATCACAGATTCGTGTGCGGTCAAGCATTGATACAATT
CATCGCATGAGCGTAATCTGAAATAACCAGGATAGCCATCAATACTTTCT
AAGAATGTCTGTGATTCTGATAATGGGATATGTCCTATAGTATTCATTTC
ATCCAGCTCGAGTTCATTAGTTGCCATAAAGCGTGGAATAAATCCACCCT
CGGTAACACTTCCACTTAGAAAGGATTCACCCTCTTTAACATATGACGAA
CTCCTCTCTCGAACTAGCTTGCTGATTTCAGTATCAAGCTCAAAGATGGT
TTCGAGGTAGAAAGTGAAATCATTTTCGGTTGCCATTTTTGTGTTCTCTG
CTAGTTCTTAAATGTCGAAGAGTTCTGTTTATATAGCGTCTGTTCTCTGC
TATCATGTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063852-exon-scaffold_404-1491911889:20179..22989 | TCONS_00063852-exon-scaffold_404-1491911889:20179..22989 | Clytia hemisphaerica | exon |
| TCONS_00063852-exon-scaffold_404-1510915933:20179..22989 | TCONS_00063852-exon-scaffold_404-1510915933:20179..22989 | Clytia hemisphaerica | exon |
| TCONS_00063852-exon-scaffold_404-1575043694:20179..22989 | TCONS_00063852-exon-scaffold_404-1575043694:20179..22989 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_404 | supercontig | scaffold_404:20179..22989 + |
Blast
The following BLAST results are available for this feature:
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