TCONS_00063848 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00063848
Unique Name	TCONS_00063848
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1823

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_404:9281..13364+

transcript sequence

>TCONS_00063848 ID=TCONS_00063848|Name=TCONS_00063848|organism=Clytia hemisphaerica|type=transcript|length=1823bp
ATATATACTTTAAAACCTTTCAgttttgacaggttttgaacTATTTTTAC
TCTCATAACCAGATAAAGTCTTACTTTAAAAATGGACAAGCTACCTTTAA
AACATGTTGTTACCGTAAATGAGAGGGGTAGCGCCATCAGAGCTGTGCGT
TTTAATTTTGATGGTGAGTATTGTATGACATGTGGAAGTGACAAATCTGT
TAAATTATGGAATCCCTATAAAAACATTCTATTGAAGACATACTCTGGAC
ATGGCTATGAAGTTTTGGATTGTGCTTCTTCGACTGATAATAGTAGACTG
GCTAGTTGTAGTGCAGATAAAACAGTTGTTCTCTGGGATGTTGCAACTGG
TCAAGTTGTTAGGAAGTACAGAGGTCATCTTGGTAGGGTGAATTGTGTCA
AATTCAATTCTCCTGACAGTAGTGTCATTTTGTCTGGATCATATGATGCT
ACTGTACGTTGTTGGGATTGCAGATCAAGGAGTCTGGAACCCATTCAAAT
TATTGATGACGCTAAGGACAGTATATCCTCATTGCAAGTtacagaaaatg
aaattttaacagGttcaGTGGATTGTTATTCAAGGATCTATGATATCCGT
AAAGGACAACTAAGAGAGGATTGTATGGGAGAATCAATCACTTCGATATC
TATAACAAATGATGGACAATGTATACTGGCATCTTTGCTAGCCAGCTCAA
TTAAATTGATTGATAAAGATAATGGATCAGTATTAAATTCATTTGAAGGA
CATGTAAATAAAGAGTATAAAGTTGAcagttgtgtttcaagcaatgATAC
CCATGTTATGAGCGGCTCTGAGGATGGTTGTATTTACTTTTGGGATCTGA
TTGAAGCAAAAGTTGTTACGAAAACAGTTGATGCACATAAAGGTGTTGTG
TACTCTATGTCAAAACACCCTGAAAAGAATAGTATTTTGACTGCTGCAAC
AGATGGAGTCAAATTATGGACATGTAATGAAGATGAAGTTAACGACGATG
AACAGCAAGGCATAAAATCAACCTGATTAGTTGACTATTTATGCCCAAAT
AATTTCTTAATCTTCACCTTTATACACTTTTATCTGATAATACATTATTT
ATTTTCTCTTGATATTGCACACTAGGAAACCAAATAGGTTACAGTTTCTA
GTTCAATAGATAAAATATTGTAATTCTCACATTTTTGTCACTTATCCTGA
TCTAGTCATGTTGATATAACACAACGCTGAATTATTGTAATGTATGCACA
CCTTGTGTTTTTCAGATGAAATATTGTGAAAGATGATAAACAAAcgataa
taaaaaatcaaaatgagtGAAAGCACAGATTGTTATGCTGATGTGGAAAA
AGGGTTGAAGAAAACTATCAACATTATTCTCTCTGAAGAAACTGAAGATA
AGTCCAAAGAGAAAAATAACAATTTACAACATGCTGTAGAAGATTTTGAA
CAATCTatacaaaaattgcaaaacttTTTCACAGAGTCTCTCTTGACGTT
CAATTATTTGAATCCAGCAAAGAAGGAGGAAGATGAGATACAACAAATGA
AAGAAGAACTTGCTCGTAAAGATACTTTGATTAAAGATCAGATGAAAAAG
CTTTCGAGATACAGGATTGAACTTGAAGTCATTCAAGAATTACAAATGCA
AGCTCGTACTAAAACattataaaaattaatttctttgatCCATGACAAAA
ACATTTATGCTGTAAATCAACTTGGATTATCTTGAATTCAAAATGAACTT
TAACACAGAGCATTTAATATCACCTTATCTTGGCTGaaaatatattttga
aggaAACTTGCTTTGATATGCAC

Run BLAST on NCBI

transcript from alignment at scaffold_404:9281..13364+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00063848 ID=TCONS_00063848|Name=TCONS_00063848|organism=Clytia hemisphaerica|type=transcript|length=4084bp|location=Sequence derived from alignment at scaffold_404:9281..13364+ (Clytia hemisphaerica)
ATATATACTTTAAAACCTTTCAgttttgacaggttttgaacTATTTTTAC
TCTCATAACCAGATAAAGTCTTACTTTAAAAATGGACAAGCTACCTTTAA
AACATGTTGTTACCGTAAATGAGAGGGGTAGCGCCATCAGAGCTGTGCGT
TTTAATTTTGATGGTGAGTATTGTATGACATGTGGAAGTGACAAATCTGT
TAAATTATGGAATCCCTATAAAAACATTCTATTGAAGACATACTCTGGAC
ATGGCTATGAAGTTTTGGATTGTGCTTCTTCGACTGATAATAGTAGACTG
GCTAGTTGTAGTGCAGATAAAACAGTTGTTCTCTGGGATGTTGCAACTGG
TCAAGTTGTTAGGAAGTACAGAGGTCATCTTGGTGTATGTATGCTTTTAT
TTAAGTTTTCGTTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTTTTCGACCCAAATCAGCAAAACCCCCCCTCactattctgggggggggg
tgcacactatgttTGCTATTACTTTATGCAAATCCATTAATTTATTGAAA
GAATGAATCTTTCTTTTGGATTgttttttttacagtatactgtttgaaaa
aatcttactATTTACACTTtggtacatttttatttttatcacatTTTTCA
GTCATATTATATTGCAATTCTAATATTTCCCTGTCTTACTTTTAGAGGGT
GAATTGTGTCAAATTCAATTCTCCTGACAGTAGTGTCATTTTGTCTGGAT
CATATGATGCTACTGTACGTTGTTGGGATTGCAGATCAAGGAGTCTGGAA
CCCATTCAAATTATTGATGACGCTAAGGACAGTATATCCTCATTGCAAGT
tacagaaaatgaaattttaacagGGTATGTATAAATCTAGTAAAATTATT
TATCATGAATTAAGACTAAGTATTTTATAGGTTTATTCTTTGTTTGgtca
aattatttatttttggcTGATGAAGTTTatgaagattttttgtttttgaa
attgagGGTGGATTCCTTTTAACTTATGttcatttaattattttcaacta
ttttgttcatttattttcattttagttcaGTGGATTGTTATTCAAGGATC
TATGATATCCGTAAAGGACAACTAAGAGAGGATTGTATGGGAGAATCAAT
CACTTCGATATCTATAACAAATGATGGACAATGTATACTGGCATCTTTGC
TAGCCAGCTCAATTAAATTGATTGATAAAGATAATGGATCAGTATTAAAT
TCATTTGAAGGACATGTAAATAAAGAGTATAAAGTTGAcagttgtgtttc
aagcaatgATACCCATGTTATGAGCGGCTCTGAGGATGGTTGTATTTACT
TTTGGGATCTGATTGAAGCAAAAGTTGTTACGAAAACAGTTGATGCACAT
AAAGGTGTTGTGTACTCTATGTCAAAACACCCTGAAAAGAATAGTATTTT
GACTGCTGCAACAGATGGAGTCAAATTATGGACATGTAATGAAGATGAAG
TTAACGACGATGAACAGCAAGGCATAAAATCAACCTGATTAGTTGACTAT
TTATGCCCAAATAATTTCTTAATCTTCACCTTTATACACTTTTATCTGAT
AATACATTATTTATTTTCTCTTGATATTGCACACTAGGAAACCAAATAGG
TTACAGTTTCTAGTTCAATAGATAAAATATTGTAATTCTCACATTTTTGT
CACTTATCCTGATCTAGTCATGTTGATATAACACAACGCTGAATTATTGT
AATGTATGCACACCTTGTGTTTTTCAGATGAAATATTGTGAAAGATGATA
AACAAAcgataataaaaaatcaaaatgagtGAAAGCACAGATTGTTATGC
TGATGTGGAAAAAGGGTTGAAGAAAACTATCAACATTATTCTCTCTGAAG
AAACTGAAGATAAGTCCAAAGAGAAAAATAACAATTTACAACATGCTGTA
GAAGATTTTGAACAATCTatacaaaaattgcaaaacttTTTCACAGAGTC
TCTCTTGACGTTCAATTATTTGAATCCAGCAAAGAAGGAGGAAGATGAGA
TACAACAAATGAAAGAAGAACTTGCTCGTAAAGATACTTTGATTAAAGAT
CAGATGAAAAAGCTTTCGAGATACAGGATTGAACTTGAAGTCATTCAAGA
ATTACAAATGCAAGCTCGTACTAAAACattataaaaattaatttctttga
tCCATGACAAAAACATTTATGCTGTAAATCAACTTGGATTATCTTGAATT
CAAAATGAACTTTAACACAGAGCATTTAATATCACCTTATCTTGGCTGGT
AAGTCACGTGCATCTCCTGTGATCCAAAATCGTGATGTATAGTACCATTT
ACTTGGTAAATGATACCAAGCTATGTCTATGCTATTTGGAGCTGGAAAAA
ATGTATTCTTGTTGGAACGAGTATATCAAATTTCTATTGCTTTACTACAG
TTTAATTTTGAAGCATTAGAGCTTTGTCATCATTTAACAGTAAACAATTT
TGTGGTGGTTACACTATATTCGCTTCGATATAACAAGATTGATATACACT
GTTTTCAGTGGTCCCTATAGTGCCCTCAATTTGTATAATTTCTTTATCTA
AAAGTTTGAGTTTTCCCAACTCATCCACTCATGGCGCAGTACTCATTGCG
CTTTTCTACAGATAAGTAGGTTTTATTTCGTAGAATTTTTAGTAGGATAG
AGTGAAGTCCCCAAATGTACTAAATGCTGAAAATCCTCTAGAAATTATGG
GAAGGGAAGTAGCTACAGTGAGAAATGTGAGGAATATACGAGTACTGAAT
Aactgaatatttaaaaaaatttaatagcttaaaatttgaataactcagcc
aaaaaaaaaggattttttattcGATCACTTTTTATTCATCGTATGCATCT
TCtgtaaaaaaatggtaaaataatatCCCAAAGTTGACGTCACCTTTAAA
TAGttcatagtttgcagagggttGTGAACTTGCGCACCCACCCCTTTATA
CCCAAGCCCCTACTGTAATGAAATTTTCCCCTTCCccttttttacagaaa
atatattttgaaggaAACTTGCTTTGATATGCAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_040037	XLOC_040037	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00063848-exon-scaffold_404-1491911889:9281..9664	TCONS_00063848-exon-scaffold_404-1491911889:9281..9664	Clytia hemisphaerica	exon
TCONS_00063848-exon-scaffold_404-1510915933:9281..9664	TCONS_00063848-exon-scaffold_404-1510915933:9281..9664	Clytia hemisphaerica	exon
TCONS_00063848-exon-scaffold_404-1575043694:9281..9664	TCONS_00063848-exon-scaffold_404-1575043694:9281..9664	Clytia hemisphaerica	exon
TCONS_00063848-exon-scaffold_404-1491911889:10976..11154	TCONS_00063848-exon-scaffold_404-1491911889:10976..11154	Clytia hemisphaerica	exon
TCONS_00063848-exon-scaffold_404-1510915933:10976..11154	TCONS_00063848-exon-scaffold_404-1510915933:10976..11154	Clytia hemisphaerica	exon
TCONS_00063848-exon-scaffold_404-1575043694:10976..11154	TCONS_00063848-exon-scaffold_404-1575043694:10976..11154	Clytia hemisphaerica	exon
TCONS_00063848-exon-scaffold_404-1491911889:11356..12578	TCONS_00063848-exon-scaffold_404-1491911889:11356..12578	Clytia hemisphaerica	exon
TCONS_00063848-exon-scaffold_404-1510915933:11356..12578	TCONS_00063848-exon-scaffold_404-1510915933:11356..12578	Clytia hemisphaerica	exon
TCONS_00063848-exon-scaffold_404-1575043694:11356..12578	TCONS_00063848-exon-scaffold_404-1575043694:11356..12578	Clytia hemisphaerica	exon
TCONS_00063848-exon-scaffold_404-1491911889:13328..13364	TCONS_00063848-exon-scaffold_404-1491911889:13328..13364	Clytia hemisphaerica	exon
TCONS_00063848-exon-scaffold_404-1510915933:13328..13364	TCONS_00063848-exon-scaffold_404-1510915933:13328..13364	Clytia hemisphaerica	exon
TCONS_00063848-exon-scaffold_404-1575043694:13328..13364	TCONS_00063848-exon-scaffold_404-1575043694:13328..13364	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_404	supercontig	scaffold_404:9281..13364 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.379499	0	0	0.210509	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Blast

[Close]

BLAST of TCONS_00063848 vs. Swiss-Prot (Human)
Match: WDR83 (WD repeat domain-containing protein 83 OS=Homo sapiens GN=WDR83 PE=1 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 5.192e-105
Identity = 162/306 (52.94%), Postives = 217/306 (70.92%), Query Frame = 1

Query:   79 KMDKLPLKHVVTVNERGSAIRAVRFNFDGEYCMTCGSDKSVKLWNPYKNILLKTYSGHGYEVLDCASSTDNSRLASCSADKTVVLWDVATGQVVRKYRGHLGRVNCVKFNSPDSSVILSGSYDATVRCWDCRSRSLEPIQIIDDAKDSISSLQVTENEILTGSVDCYSRIYDIRKGQLREDCMGESITSISITNDGQCXXXXXXXXXXXXXDKDNGSVLNSFEGHVNKEYKVDSCVSSNDTHVMSGSEDGCIYFWDLIEAKVVTKTVDAHKGVVYSMSKHPEKNSILTAATDGVKLWTCNEDEVND 996
            +  +LP K + T++    A+RAVRFN DG YC+TCGSDK++KLWNP +  LL+TYSGHGYEVLD A S DNS L S   DK VVLWDVA+GQVVRK+RGH G+VN V+FN  +++VILSGS D+++RCWDCRSR  EP+Q +D+A+D +SS++V+++EIL GSVD   R YD+R GQL  D +G  IT    + DGQC L S L S+++L+DKD G +L  ++GH N+EYK+D C+S  DTHV+S SEDG ++FWDL+E  +    +    GVV S++ HP +  +LTA    V+ W     E  D
Sbjct:    9 RPPELPQKRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNE-EATVILSGSIDSSIRCWDCRSRRPEPVQTLDEARDGVSSVKVSDHEILAGSVDGRVRRYDLRMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYKGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWDLVEGALAL-ALPVGSGVVQSLAYHPTEPCLLTAMGGSVQCWREEAYEAED 312

The following BLAST results are available for this feature:

BLAST of TCONS_00063848 vs. Swiss-Prot (Human)

BLAST of TCONS_00063848 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
WDR83	5.192e-105	52.94	WD repeat domain-containing protein 83 OS=Homo sap...	[more]

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TCONS_00063848 (transcript) - C. hemisphaerica