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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063772 ID=TCONS_00063772|Name=TCONS_00063772|organism=Clytia hemisphaerica|type=transcript|length=1191bp
aacccggccctcgttttcggggattgatGGGTCTCACTGAAATATTCATA
GGTTTACACGCAAGGGCTATTGAACCCGACctgggatgcggcacatcaaa
ggccgactattattcctctctgatggGAAATTAGACCGGTCCTATAGAGC
TTTAGCTTGGGCAGCCGCcgatccgccatcggaatatcaaaTAAGCGTTG
TCGGGTTGTCACTTGACCATTGATCAAACCTGCCAAtgagattttgcttg
agaaggtCAGTGCTGCTCTCGTTCTATACCACATTACGTTTAAACCTGAA
CACTTCGTCATAGCTCACGGAAAATCCAAGACGACTTAGTTCGGTCAAAA
gccacccagctggcacacaacgtcgttttaacgttcatctaacgttatat
ggacgttgtgaacgttatacaaacgttgaaacaacgttgtgtgccagctg
gccATTATGATCCATACACTTTTTCTGCATCTACGCCCAACCCAAACATG
ATTGGTGAGGTGCGGGATCGCGGTCTCGCTTCACTCACAAAAGCTTGTCC
GGTGCTTGTCTGCTTTAACTCGTTCTTAGTCAGCATTTCCATCAACAGTC
GAAGATAACTTTGGACCCATGACTTTCCAAACTTCACGCCCTTAATCATT
TCATGGGATGGGTACTCTGCCGTAACGAAAACAGTTGACTTCATTATTTT
CGCCTAAGATCAATTTTGCGGCTTGTTTTATTATTCGCTTCGCTTCCTCA
TCACTGTCACGCATcctgttttttttattcatcaTTGATCAGATGGTTAC
ACATATATCCCAAAAGACAACAACATTGGATCGACCTTGCATCTCGGCAA
AGAATAAGGAGTCACCATATTTCTCGAAAAGTTTTCCTTTTAGATATTTC
CGGGAGAAATATTACGTCATCGGACTCGGCGATTTCTTTCATCTTCTCAT
GAATCTCAGCGAGTGAGTGCAATTCACCCTTGGTTTTCAGCCAATCGCAG
ATTGTTTCaaagtaattttgattttccataTTTTGGGGTCTACCCTTAGT
CACTTCAGGGTTGGTTTTACCAGTAAAgttttttcgacaattttcatGAT
ACTCGGCGTTCCCTTGTATTAGATCAACGCAGGGGACGATTCGCCGTCTA
ACTTCTTCTGCCCATTCGTCATCACGTTTATCGCAAATTTC Run BLAST on NCBI protein sequence of TCONS_00063772-protein >TCONS_00063772-protein ID=TCONS_00063772-protein|Name=TCONS_00063772-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
EICDKRDDEWAEEVRRRIVPCVDLIQGNAEYHENCRKNFTGKTNPEVTKG
RPQNMENQNYFETICDWLKTKGELHSLAEIHEKMKEIAESDDVIFLPEIS
KRKTFREIW Run BLAST on NCBI transcript from alignment at scaffold_40:102430..103620 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063772 ID=TCONS_00063772|Name=TCONS_00063772|organism=Clytia hemisphaerica|type=transcript|length=1191bp|location=Sequence derived from alignment at scaffold_40:102430..103620 (Clytia hemisphaerica)
GAAATTTGCGATAAACGTGATGACGAATGGGCAGAAGAAGTTAGACGGCG
AATCGTCCCCTGCGTTGATCTAATACAAGGGAACGCCGAGTATCatgaaa
attgtcgaaaaaacTTTACTGGTAAAACCAACCCTGAAGTGACTAAGGGT
AGACCCCAAAAtatggaaaatcaaaattactttGAAACAATCTGCGATTG
GCTGAAAACCAAGGGTGAATTGCACTCACTCGCTGAGATTCATGAGAAGA
TGAAAGAAATCGCCGAGTCCGATGACGTAATATTTCTCCCGGAAATATCT
AAAAGGAAAACTTTTCGAGAAATATGGTGACTCCTTATTCTTTGCCGAGA
TGCAAGGTCGATCCAATGTTGTTGTCTTTTGGGATATATGTGTAACCATC
TGATCAAtgatgaataaaaaaaacaggATGCGTGACAGTGATGAGGAAGC
GAAGCGAATAATAAAACAAGCCGCAAAATTGATCTTAGGCGAAAATAATG
AAGTCAACTGTTTTCGTTACGGCAGAGTACCCATCCCATGAAATGATTAA
GGGCGTGAAGTTTGGAAAGTCATGGGTCCAAAGTTATCTTCGACTGTTGA
TGGAAATGCTGACTAAGAACGAGTTAAAGCAGACAAGCACCGGACAAGCT
TTTGTGAGTGAAGCGAGACCGCGATCCCGCACCTCACCAATCATGTTTGG
GTTGGGCGTAGATGCAGAAAAAGTGTATGGATCATAATggccagctggca
cacaacgttgtttcaacgtttgtataacgttcacaacgtccatataacgt
tagatgaacgttaaaacgacgttgtgtgccagctgggtggcTTTTGACCG
AACTAAGTCGTCTTGGATTTTCCGTGAGCTATGACGAAGTGTTCAGGTTT
AAACGTAATGTGGTATAGAACGAGAGCAGCACTGaccttctcaagcaaaa
tctcaTTGGCAGGTTTGATCAATGGTCAAGTGACAACCCGACAACGCTTA
tttgatattccgatggcggatcgGCGGCTGCCCAAGCTAAAGCTCTATAG
GACCGGTCTAATTTCccatcagagaggaataatagtcggcctttgatgtg
ccgcatcccagGTCGGGTTCAATAGCCCTTGCGTGTAAACCTATGAATAT
TTCAGTGAGACCCatcaatccccgaaaacgagggccgggtt Coding sequence (CDS) from alignment at scaffold_40:102430..103620 >TCONS_00063772 ID=TCONS_00063772|Name=TCONS_00063772|organism=Clytia hemisphaerica|type=CDS|length=330bp|location=Sequence derived from alignment at scaffold_40:102430..103620 (Clytia hemisphaerica)
GAAATTTGCGATAAACGTGATGACGAATGGGCAGAAGAAGTTAGACGGCG
AATCGTCCCCTGCGTTGATCTAATACAAGGGAACGCCGAGTATCatgaaa
attgtcgaaaaaacTTTACTGGTAAAACCAACCCTGAAGTGACTAAGGGT
AGACCCCAAAAtatggaaaatcaaaattactttGAAACAATCTGCGATTG
GCTGAAAACCAAGGGTGAATTGCACTCACTCGCTGAGATTCATGAGAAGA
TGAAAGAAATCGCCGAGTCCGATGACGTAATATTTCTCCCGGAAATATCT
AAAAGGAAAACTTTTCGAGAAATATGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063772-exon-scaffold_40-1491911889:102430..103620 | TCONS_00063772-exon-scaffold_40-1491911889:102430..103620 | Clytia hemisphaerica | exon |
| TCONS_00063772-exon-scaffold_40-1510915933:102430..103620 | TCONS_00063772-exon-scaffold_40-1510915933:102430..103620 | Clytia hemisphaerica | exon |
| TCONS_00063772-exon-scaffold_40-1575043694:102430..103620 | TCONS_00063772-exon-scaffold_40-1575043694:102430..103620 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_40 | supercontig | scaffold_40:102430..103620 . |
Blast
The following BLAST results are available for this feature:
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