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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006273 ID=TCONS_00006273|Name=TCONS_00006273|organism=Clytia hemisphaerica|type=transcript|length=3550bpRun BLAST on NCBI protein sequence of TCONS_00006273-protein >TCONS_00006273-protein ID=TCONS_00006273-protein|Name=TCONS_00006273-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1182bp LTYTGGMCDGDRSVAVIKADGFNAAFSLAHQIGHSLGIEDDGVGNVCESGRun BLAST on NCBI transcript from alignment at sc0000066:447272..481213+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006273 ID=TCONS_00006273|Name=TCONS_00006273|organism=Clytia hemisphaerica|type=transcript|length=33942bp|location=Sequence derived from alignment at sc0000066:447272..481213+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000066:447272..481213+ >TCONS_00006273 ID=TCONS_00006273|Name=TCONS_00006273|organism=Clytia hemisphaerica|type=CDS|length=78012bp|location=Sequence derived from alignment at sc0000066:447272..481213+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00006273 vs. Swiss-Prot (Human)
Match: ATS6 (A disintegrin and metalloproteinase with thrombospondin motifs 6 OS=Homo sapiens GN=ADAMTS6 PE=2 SV=2) HSP 1 Score: 320.857 bits (821), Expect = 1.847e-91 Identity = 223/693 (32.18%), Postives = 318/693 (45.89%), Query Frame = 3
Query: 3 LTYTGGMCDGDRSVAVIKADGFNAAFSLAHQIGHSLGIEDDGVGNVCESGQH----IMASGSGKAAEAYRWSKCSSDYLQGFLRKNQSNCLDHFTSQSSNRENLELYGNAGNVYDVDSQCQFVLGDGAKACYQADKDQICSELMCLHPIYSNCTKTRKPALDGTSCG----KDLWCQTGVCVKKGVRDDLVIDGGWSPWKDYVICSRTCGGGVSYRERVCDQPSPQNGGKYCEGRGREYNICNEKPCIESDESFRQQQCKEQNNTFYEDRLSNWTSLENVDESGCQLKCASEADSKITKSFGIVRDGTECRIANIPGRCVQGECNPVGCNMELGSLSVTDRCGICNGDGGTCTTDENIVNNTLAN------------SRMIVNRN--LMQRLVTLEDQKSGQFENVAKRLTQLRSL---MTDVVTKKCDGDTNCMQRYGLSKKDRI------ETRPSEIYKWKMVT-------------------SGCSASCGTGVETLFPECRRVDDGTPVTNMLCEKNAEKPNKMTRSCTHASCPPRWTTSKWSSCSRTCGTGKKTRNVYCSLNIN-TEEFLLPSNQCKEHDKPLQLMSCNVQSCPARWTTTPFGECSSTCGIGHRRRDVTCRRVDNTDGFLKTLPESDCDRASKPLQQIVCNAHNPCPGYRKCGGIHNATSGTISSQNFPGNYTKNIECV 1928
L GMC+ +RS ++ + G +AF++AH+IGH+ G+ DG+GN C + H +MA+ + WS CS DY+ FL + CLD ++ R+ L G VYD D QC+F G ++ C ++C EL CL + C PA +GT C + WC G CV G IDGGW PW + CSRTCGGGVS R CD P+P GGKYC G + Y CN PC FR++QC + +N + + NW C L C +E + T+ V DGT+C A+ C+ GEC VGC+ LGS + DRC +C GDG TC E N++L S I R + + + L+ + + N A + R T K+ + ++ G + ++ I E YK+ + S CSA+C GV+ C+R+DD + V N C+ ++ KP + R+C CPP W W CS+TC G +TR V C I +EE L + C H +P++ CN QSCP +W + EC+ CG G + R V C+ D KT P + C SKP +I C+ CP R G G S+Q G + ++C+
Sbjct: 374 LASVAGMCEPERSCSINEDIGLGSAFTIAHEIGHNFGMNHDGIGNSCGTKGHEAAKLMAAHITANTNPFSWSACSRDYITSFLDSGRGTCLD---NEPPKRDFLYPAVAPGQVYDADEQCRFQYGATSRQCKYG---EVCRELWCLSK-SNRCVTNSIPAAEGTLCQTGNIEKGWCYQGDCVPFGTWPQ-SIDGGWGPWSLWGECSRTCGGGVSSSLRHCDSPAPSGGGKYCLGERKRYRSCNTDPCPLGSRDFREKQCADFDNMPFRGKYYNWKPYTGGGVKPCALNCLAEGYNFYTERAPAVIDGTQCN-ADSLDICINGECKHVGCDNILGSDAREDRCRVCGGDGSTCDAIEGFFNDSLPRGGYMEVVQIPRGSVHIEVREVAMSKNYIALKSEGDDYYINGAWTIDWPRKFDVAGTAFHYKRPTDEPESLEALGPTSENLIVMVLLQEQNLGIRYKFNVPITRTGSGDNEVGFTWNHQPWSECSATCAGGVQRQEVVCKRLDDNSIVQNNYCDPDS-KPPENQRACNTEPCPPEWFIGDWLECSKTCDGGMRTRAVLCIRKIGPSEEETLDYSGCLTH-RPVEKEPCNNQSCPPQWVALDWSECTPKCGPGFKHRIVLCKSSD----LSKTFPAAQCPEESKPPVRIRCSLGR-CPPPRWVTG----DWGQCSAQCGLGQQMRTVQCL 1046 The following BLAST results are available for this feature:
BLAST of TCONS_00006273 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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