|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000479 ID=TCONS_00000479|Name=TCONS_00000479|organism=Clytia hemisphaerica|type=transcript|length=1019bp
AAAGATTGTTTGGGTTATGGAGGTTCGAGGTATAGACTCCACTCTATAGC
ATCAAGCTCGTCGAATATACGAAATCTTACGTTTATACTACACCGATAGA
AACAATGAAACAATGTTTCGCGAGTACAGACTTGACGTCAAGAACAGACT
CAATATACCATACCAAAAACAAGCACGTGACATGAAGAAATTGGAGAAAG
CATTATCAGCTGAAGAATACAATGCAGCTATTGTTGGATCGTCACGTGAT
GAAAGAATGCAACGGTTGGAAGATGCGTTCAAATCATTATGTGAAGACGA
ATATGCACGTGTTATAAAACGATTGAACACTTATTGTTGATTGGTTAGAT
TTTGGTGAGCTGTGAATTTGATTGGTCATTTCGGACGAACTCTTTGGAtg
aatttggaaatttgataattttatggTAATTCTGAAATTGCCAAATTTTG
ATGTGAATATATCTGGACAGGTAAAGTTGATGTGTGGCATGAACTTCTAA
AACGAtatttatttgataatttttaaaatattttttttactagactaaaa
ttttcagttttctttTGTCTTTGGATTGATTTCAACATTGGTAAATTTCC
TTTGACATAATTTGACAGaaggataaaattttttggTACCCGATAAAAAT
CCAATTTAATCTTTTTGCATATTGGGATTTGAAAGGTTTTTTATAACTCG
ATTGGTCATGATATCCAATAAAAAGCAACGAAGTTTCAAGAATTGTATTT
TAAAGACATCTATAGGGTAGAAATATTctatacccagctggcacacaacg
tcgtttcaacgttcatctaacgttcacaacgtccatataacgttagatga
acgttgtagcaacgttgtgtgccagctgggtaaatTTGAGTTATTGTCAG
AGaaatatttgacaaaatataTTTGAACTTCATAGTCACTGAAATTACTT
TTCCCTTTAACTTTATGAATATGATAGGTCAAATCTCCAATTTTAAGAGA
ACTGATTTTCTGTGAGAAC Run BLAST on NCBI transcript from alignment at sc0000002:1396452..1400203+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000479 ID=TCONS_00000479|Name=TCONS_00000479|organism=Clytia hemisphaerica|type=transcript|length=3752bp|location=Sequence derived from alignment at sc0000002:1396452..1400203+ (Clytia hemisphaerica)
AAAGATTGTTTGGGTTATGGAGGTTCGAGGTATAGACTCCACTCTATAGG
TTGGTTTTAAAAATATGGTGGTTTGGTTTTTCAAAGCTTTGGGATCGTAT
AGCCCAAAGAATGATGTTTGGACGTACCATACCATTTTTCATATGAACAA
ACTTTGAGACccaattacacattttttataagaacaaactatataagaac
ataaggcttcgatggccaaaatattaaaaacaaggtaagagcattttaag
gtcttgcggactctaaaacactcgatttctagagaaaaataatcaaaaaa
taagaacatgttaagaacatcctaaggctcaaaaaattttggatgttcta
taAAAAAGCGTATCTATCGAAAACAAGCATTATATCATCACGTGACCGAT
TTAAATTTTATGGCCTGTGTAAtgatttatttctattttgttatTGATAT
TTTGCGATTGATATTTTGCGATTAAGAAAAGTTGAATAAAGCCGACATGC
TCAGGATAGCGTGTTGGTGGTTTGGAAGAACGCCAGGTTTTTGCTAATCA
TTTTATTGCCATTAGCACATTCCATCATTGCTTTATATCCTAGCACCAAC
AAGACTTTATGATTGCTggacgttttttataagaaagttttttaagcCTT
TGGGTGTCCTTAtttctttgagttttaagcctcaaaatgttcttaacatg
ttcttattttccccattttgtgagtatttttgtccattttcctaagaaat
taagTGTTTCATggtcctcaaagccttaaaatgttctcaactttatattt
tggccatcgagtacttatgttcttatatagtttgatCTTATAGAAAAGAG
AGTATTCTAGTGTATTTTCCTTAGGAATTGCACGTTTTAGAGAATGCAAA
GGCTTTTTGGCATCAAAAAGCCTCGTATGTTCTTATCTAGTTTGCTCTTT
AAAAAACGTTTCGACGTAAGATTACCTTTGCTTGactaaatattctttta
gcGAAATTCAGTTATGCTGGATTGTTGATAACCATCGCGTTTTTCTCTGT
TTGTTTTTCAGCATCAAGCTCGTCGAATATACGAAATCTTACGTTTATAC
TACACCGATAGAAACAATGAAACAATGTTTCGCGAGTACAGACTTGACGT
CAAGAACAGACTCAATATACCATACCAAGTAAGTTGATTTTCAAAATCTA
CCGGATGACCCCacgaaaaaaaaccctttttaagtattttttacaCTCCA
ACAGACTAAAGCTCATAAATTTGGCACTAGGGGGTCAAATTCAAATAAGC
AACagctcaaattttaaattaGGATATCTACATTCCTTATATTGAAATTC
TTAAGCACtttaaaacatttgttttgTCCTTgagacgtcgagaaacgtcc
gaactctttcgtgggtcacccggtacttTTTACCCGAAGTTCTTTAACCA
CCTTAGAAATGAAGTGGACTCTTGCTCAATAGAACTTATACTATACGGAT
AGTTGCCTCATTATCTGTCAAATATAGTGTGGATAATTGTGTTAACTACT
CTTAAACATTTTCTTTACACTGTCGAAAGCAGTGACAATAAAATGCTTGT
AAAAGACTGTTATTCAGATAGTagttagactagagtctactgaactttgc
ttttttatatttttttatgaagatgAGTAGTAGACTTGTAGTAGTAGCAC
TtgacgaggtcgccattttttaaagaaatgNctgaactttgcttttttat
atttttttatgaagatgAGTAGTAGACTTGTAGTAGTAGCACTtgacgag
gtcgccattttttaaagaaatgttttgactgttttacagtccgcctaagc
aaaagcatattgcCATATATACTACCAGACCACTTAATCGCACCATCCag
actataaaaaagctttatgTGGACCCCAGACTAAGTGGAAAGACTTTACT
TATTCTCTGCCCTCCTTAAGgtcaaatttttataaaaactttccataatt
cgaatgtATTTGTAATTTGAATGactttaattttacttttgagTTCGAAT
AAGCAAAAGTTAACGGTGTGAATTTTTAGCTGTGATATGCCATCAGGAAT
ACAAGGTTAGACATATTcctaagtatttcttttcagtgAAGAAAGTTTAA
CCGACTTGCTTTTTATGTTTAAAGCTTAATATAGAATTTACCTATATCTG
ACACGTGTATAGTGTGTAGTTGGTCCCTTATTGACCTCCCCGGTACTTTT
GGCAAAATGTACCTCAACTGACAAAACTGCCACTTATTCAGTACTTTAGT
AATAGCTGAGTATGCCATATGATAGCCAGAATCTCCCCTGACTATATTGA
TTTTAGCTATTGTTTAAGGTAAaagtggcttttaaaattttttattgagt
TGAAAAATTGAGGGCTTTTCTGCATATTGTCACAAAATCAGCACCCCTTT
CCTCATCTTTTATTTAATAAACAATTTTCCCTTCTATCCTCTCGGCCTTT
GTGATATTTGGAGAGGTTCCTCCCCCATCCACCTTTAGAAAAGGAGAGTG
CAGAATTAAAAGTTACTTTATATATATTTGGTGTTAATTCCTGGATAGCT
ATTTATAGCAAATCTTAATGTAACAGCGGTAGTAAGCAAAAAAGAAAGTC
TCACTTTTTACGAAAAGAAAAGTAATACAGGAGTTATAAACCAGGTCAGC
CCAAAAAAAAGGATACGATGAATCAAAATATAAGACAGAATAGCAAGAAG
GATGCGATGATGACAAGTACTCTGATAGGTGGTTCGTTTTTTTAAATagt
tattttggaaaattctcttgatttcaaaaagaaataatttccaCGTATAA
TGGCCAAGAATTACTTCACAAAAGACCACACCCTGTATCGTTTCTATAGA
AACAAGCACGTGACATGAAGAAATTGGAGAAAGCATTATCAGCTGAAGAA
TACAATGCAGCTATTGTTGGATCGTCACGTGATGAAAGAATGCAACGGTT
GGAAGATGCGTTCAAATCATTATGTGAAGACGAATATGCACGTGTTATAA
AACGATTGAACACTTATTGTTGATTGGTTAGATTTTGGTGAGCTGTGAAT
TTGATTGGTCATTTCGGACGAACTCTTTGGAtgaatttggaaatttgata
attttatggTAATTCTGAAATTGCCAAATTTTGATGTGAATATATCTGGA
CAGGTAAAGTTGATGTGTGGCATGAACTTCTAAAACGAtatttatttgat
aatttttaaaatattttttttactagactaaaattttcagttttctttTG
TCTTTGGATTGATTTCAACATTGGTAAATTTCCTTTGACATAATTTGACA
GaaggataaaattttttggTACCCGATAAAAATCCAATTTAATCTTTTTG
CATATTGGGATTTGAAAGGTTTTTTATAACTCGATTGGTCATGATATCCA
ATAAAAAGCAACGAAGTTTCAAGAATTGTATTTTAAAGACATCTATAGGG
TAGAAATATTctatacccagctggcacacaacgtcgtttcaacgttcatc
taacgttcacaacgtccatataacgttagatgaacgttgtagcaacgttg
tgtgccagctgggtaaatTTGAGTTATTGTCAGAGaaatatttgacaaaa
tataTTTGAACTTCATAGTCACTGAAATTACTTTTCCCTTTAACTTTATG
AATATGATAGGTCAAATCTCCAATTTTAAGAGAACTGATTTTCTGTGAGA
AC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000479-exon-sc0000002-1491911889:1396452..1396500 | TCONS_00000479-exon-sc0000002-1491911889:1396452..1396500 | Clytia hemisphaerica | exon |
| TCONS_00000479-exon-sc0000002-1510915933:1396452..1396500 | TCONS_00000479-exon-sc0000002-1510915933:1396452..1396500 | Clytia hemisphaerica | exon |
| TCONS_00000479-exon-sc0000002-1575043694:1396452..1396500 | TCONS_00000479-exon-sc0000002-1575043694:1396452..1396500 | Clytia hemisphaerica | exon |
| TCONS_00000479-exon-sc0000002-1491911889:1397513..1397629 | TCONS_00000479-exon-sc0000002-1491911889:1397513..1397629 | Clytia hemisphaerica | exon |
| TCONS_00000479-exon-sc0000002-1510915933:1397513..1397629 | TCONS_00000479-exon-sc0000002-1510915933:1397513..1397629 | Clytia hemisphaerica | exon |
| TCONS_00000479-exon-sc0000002-1575043694:1397513..1397629 | TCONS_00000479-exon-sc0000002-1575043694:1397513..1397629 | Clytia hemisphaerica | exon |
| TCONS_00000479-exon-sc0000002-1491911889:1399351..1400203 | TCONS_00000479-exon-sc0000002-1491911889:1399351..1400203 | Clytia hemisphaerica | exon |
| TCONS_00000479-exon-sc0000002-1510915933:1399351..1400203 | TCONS_00000479-exon-sc0000002-1510915933:1399351..1400203 | Clytia hemisphaerica | exon |
| TCONS_00000479-exon-sc0000002-1575043694:1399351..1400203 | TCONS_00000479-exon-sc0000002-1575043694:1399351..1400203 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000002 | supercontig | sc0000002:1396452..1400203 + |
Blast
The following BLAST results are available for this feature:
|
