TCONS_00063555 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063555
Unique NameTCONS_00063555
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length507

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063555 ID=TCONS_00063555|Name=TCONS_00063555|organism=Clytia hemisphaerica|type=transcript|length=507bp
AAAAGACCAAAGACCGCATAGCTTAAACACACCAGGTTAGCCCTGGACTA
TTGAGGTATTACTTTACTTTTTGCTTCTTTCCGTCCAACGCTTCATTCAA
TCTCACGTCTCAATACAAGGGTCCTGTGGCTGGTCACCCAGGCATTTCGC
CAAATCCTGAGGAGCAGCTGCACATGACAGTGAATGGTTTCCCATGTGCA
GCTGATCAGGTATCTCTTATCCTGAATTAtctgctttttttttgttcgtc
cAACTATTCGTTCAACTAGTTCTCCTGTTGGCAATGTAATTTTACTGAAT
CACTGAGTTAAGTATCTACCCAGTCTCTGGTTTGGTGCTGTTTGTTTGCA
GCCATGCCGACTCaacaaaactctcaaaacaCCATGAGGAATGTTGTGTC
GGTTGAACTCATCAATAGTTGGAAGCAAGTTCTTGCTGAACTAGCGGAAG
AGGCCAGCAACGAAACAATTAGAAATTGCATCAGACTCTACGATCCAGAA
AAGCCNN
Run BLAST on NCBI

transcript from alignment at scaffold_392:267579..268085

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063555 ID=TCONS_00063555|Name=TCONS_00063555|organism=Clytia hemisphaerica|type=transcript|length=507bp|location=Sequence derived from alignment at scaffold_392:267579..268085 (Clytia hemisphaerica)
NNGGCTTTTCTGGATCGTAGAGTCTGATGCAATTTCTAATTGTTTCGTTG
CTGGCCTCTTCCGCTAGTTCAGCAAGAACTTGCTTCCAACTATTGATGAG
TTCAACCGACACAACATTCCTCATGGtgttttgagagttttgttGAGTCG
GCATGGCTGCAAACAAACAGCACCAAACCAGAGACTGGGTAGATACTTAA
CTCAGTGATTCAGTAAAATTACATTGCCAACAGGAGAACTAGTTGAACGA
ATAGTTggacgaacaaaaaaaaagcagaTAATTCAGGATAAGAGATACCT
GATCAGCTGCACATGGGAAACCATTCACTGTCATGTGCAGCTGCTCCTCA
GGATTTGGCGAAATGCCTGGGTGACCAGCCACAGGACCCTTGTATTGAGA
CGTGAGATTGAATGAAGCGTTGGACGGAAAGAAGCAAAAAGTAAAGTAAT
ACCTCAATAGTCCAGGGCTAACCTGGTGTGTTTAAGCTATGCGGTCTTTG
GTCTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039844XLOC_039844Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063555-exon-scaffold_392-1491911889:267579..268085TCONS_00063555-exon-scaffold_392-1491911889:267579..268085Clytia hemisphaericaexon
TCONS_00063555-exon-scaffold_392-1510915933:267579..268085TCONS_00063555-exon-scaffold_392-1510915933:267579..268085Clytia hemisphaericaexon
TCONS_00063555-exon-scaffold_392-1575043694:267579..268085TCONS_00063555-exon-scaffold_392-1575043694:267579..268085Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_392supercontigscaffold_392:267579..268085 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.4993	1.32979	2.78612	1.51193	3.50125	2.24278	1.38984	2.57929	1.20388	1.70219	1.16212	2.11751	1.12833	0.935881	0.915272	0.58038	0.268118	0.45802	0.253112	0.299127	0.312575	0	0.409511	0.14082	1.7895	3.0801	0.65298	0	0	0.269258
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063555 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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