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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063516 ID=TCONS_00063516|Name=TCONS_00063516|organism=Clytia hemisphaerica|type=transcript|length=1844bp
ATTTTTCGTTCCGATCTTTCAAAATCCAGAAATTTTGccgtttggttttt
ccaaaatcagaaaatttttggaaatgcgggagatgcgggagaaaatccaa
aaaatgcgggagatttggcagaattttcttcacgcgggagaaatcgttga
catgcgggagtctcccgctcaatgcgggagagttgacagctatgagtAGT
ACATGTACGATTTTTCTTGGACTCATTATTGCTATCAAAACTAAGGATCA
CATCTGTTTGAATCGAATGACAGAATGAAGTTGAAGTAGCCATGGCATGT
GTTGTTTTAACTGTCTTTTGGCTTTGTcattccatcatcatcatcaataa
tCATGTCTGACAGAATTGCGAGGGCTGGAACATTAGGCCACGAAGAAGTT
TTAGAGGACATTGAGTTGTACATTCGTGGCTTAGCTAGATCTTTTCCTGA
AACCAAAGAtccagaatttgaaaaaaagcttAATCAAGCCAATGTGAATG
TTCAAAGGTTAGCTCAAGGCAACACAAACGAGGCTAATGTACAACGAGTA
CATGGTCTTGTTTCTAGATTAAAATCGAGATATAATGCACTCCCTTTGGC
TTCtgttaatgaagaaaaaaattctcgtTACAGCAAAAAGACAGTTTCTG
GGAAAAAAGGAAATAACCCATATGACATTGACATAACACATTTGAAATTC
CTTTTGTCAATTGGACATAATGTCAAAGAAATTGCTGAAAAAGGGTTACT
TGGTGGCTCTATGCATAGAAACACTCTGACCAGATTCATGAAAGACAATA
ACATTCCAACACCAAGGGAGCGCTATTCTATCATTTCCGATGATGACCTT
TTGATTCTCATCCGAAAAATAGCTTTAGATTTTCCGAACTCTGGTATTCG
TGAGGTTACTGCTCTTCTTCGGACTGGAAATCCTCCTCACATTGTTCAAC
GTGACAGAGTAGCTAGATTACTTTCTTTCTCGAATCCAGAGGCAACTGCA
AGAAGATGGGCACAAGTGGTGCCACGTAGAGTTTACAGTGTTCCAACTCC
TAATCACCTGTGGCACATTGATACACATCATAGTTTAATCAGGTTATACT
TAAAGATTGATTTCTGCAAAATTaattaggcggtcatcgaaaaattgttc
tattcgcgtcacccgcccgcatcaaatttttcGCNccgtccgcccgcatg
catttttaacacccgtagcgacgcgaacagagcattttttcgatgaccgc
cttatTCAGTGGCCTTTTGAGAGCAGGGGAAAAGTTAAAGTATTAGGACT
CTCTTTACTGTTAAATTTAGCGTCGTAGCTTTTTGTAATGCTGATATATA
CCAAATTCTGTCAAATTCTATtatagcaactatctggtctgcaaagtagc
tagagttattttttttaacagcACTCaggttttatttataaaatttaaag
GCCAGATAGTTTCTATGATGGAATCAGAAAATCAGAGAAGGTATGTCAGC
ACTACACAAAGTAACAGTTGTATTCCTGTTTCAACATTTCAACGTGTATT
ATCAACCtgaatttcattttgatatCTGGCAATAAAAATGCTTATGTTGG
CCAGAAGAAACTGTTTCCAGTGTCTAAACcccaaaactttgaaaacatga
caacaatagaccttttcataaatcacgTCACAAACCGctacaaaattcaa
aattaattaaaaaaaaatttttttcaatgaaagtatcaAAAACGTATTga
gaaaacttatttttcatgtattttaaagagaaaaaagtgtattattacat
atttttctttttaattttttgagcaagaagaaaaattattgaaa Run BLAST on NCBI transcript from alignment at scaffold_391:3522..5365- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063516 ID=TCONS_00063516|Name=TCONS_00063516|organism=Clytia hemisphaerica|type=transcript|length=1844bp|location=Sequence derived from alignment at scaffold_391:3522..5365- (Clytia hemisphaerica)
ATTTTTCGTTCCGATCTTTCAAAATCCAGAAATTTTGCCGTTTGGTTTTT
CCAAAATCAGAAAATTTTTGGAAATGCGGGAGATGCGGGAGAAAATCCAA
AAAATGCGGGAGATTTGGCAGAATTTTCTTCACGCGGGAGAAATCGTTGA
CATGCGGGAGTCTCCCGCTCAATGCGGGAGAGTTGACAGCTATGAGTAGT
ACATGTACGATTTTTCTTGGACTCATTATTGCTATCAAAACTAAGGATCA
CATCTGTTTGAATCGAATGACAGAATGAAGTTGAAGTAGCCATGGCATGT
GTTGTTTTAACTGTCTTTTGGCTTTGTCATTCCATCATCATCATCAATAA
TCATGTCTGACAGAATTGCGAGGGCTGGAACATTAGGCCACGAAGAAGTT
TTAGAGGACATTGAGTTGTACATTCGTGGCTTAGCTAGATCTTTTCCTGA
AACCAAAGATCCAGAATTTGAAAAAAAGCTTAATCAAGCCAATGTGAATG
TTCAAAGGTTAGCTCAAGGCAACACAAACGAGGCTAATGTACAACGAGTA
CATGGTCTTGTTTCTAGATTAAAATCGAGATATAATGCACTCCCTTTGGC
TTCTGTTAATGAAGAAAAAAATTCTCGTTACAGCAAAAAGACAGTTTCTG
GGAAAAAAGGAAATAACCCATATGACATTGACATAACACATTTGAAATTC
CTTTTGTCAATTGGACATAATGTCAAAGAAATTGCTGAAAAAGGGTTACT
TGGTGGCTCTATGCATAGAAACACTCTGACCAGATTCATGAAAGACAATA
ACATTCCAACACCAAGGGAGCGCTATTCTATCATTTCCGATGATGACCTT
TTGATTCTCATCCGAAAAATAGCTTTAGATTTTCCGAACTCTGGTATTCG
TGAGGTTACTGCTCTTCTTCGGACTGGAAATCCTCCTCACATTGTTCAAC
GTGACAGAGTAGCTAGATTACTTTCTTTCTCGAATCCAGAGGCAACTGCA
AGAAGATGGGCACAAGTGGTGCCACGTAGAGTTTACAGTGTTCCAACTCC
TAATCACCTGTGGCACATTGATACACATCATAGTTTAATCAGGTTATACT
TAAAGATTGATTTCTGCAAAATTAATTAGGCGGTCATCGAAAAATTGTTC
TATTCGCGTCACCCGCCCGCATCAAATTTTTCGCNCCGTCCGCCCGCATG
CATTTTTAACACCCGTAGCGACGCGAACAGAGCATTTTTTCGATGACCGC
CTTATTCAGTGGCCTTTTGAGAGCAGGGGAAAAGTTAAAGTATTAGGACT
CTCTTTACTGTTAAATTTAGCGTCGTAGCTTTTTGTAATGCTGATATATA
CCAAATTCTGTCAAATTCTATTATAGCAACTATCTGGTCTGCAAAGTAGC
TAGAGTTATTTTTTTTAACAGCACTCAGGTTTTATTTATAAAATTTAAAG
GCCAGATAGTTTCTATGATGGAATCAGAAAATCAGAGAAGGTATGTCAGC
ACTACACAAAGTAACAGTTGTATTCCTGTTTCAACATTTCAACGTGTATT
ATCAACCTGAATTTCATTTTGATATCTGGCAATAAAAATGCTTATGTTGG
CCAGAAGAAACTGTTTCCAGTGTCTAAACCCCAAAACTTTGAAAACATGA
CAACAATAGACCTTTTCATAAATCACGTCACAAACCGCTACAAAATTCAA
AATTAATTAAAAAAAAATTTTTTTCAATGAAAGTATCAAAAACGTATTGA
GAAAACTTATTTTTCATGTATTTTAAAGAGAAAAAAGTGTATTATTACAT
ATTTTTCTTTTTAATTTTTTGAGCAAGAAGAAAAATTATTGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063516-exon-scaffold_391-1575043694:3522..5365 | TCONS_00063516-exon-scaffold_391-1575043694:3522..5365 | Clytia hemisphaerica | exon |
| TCONS_00063516-exon-scaffold_391-1510915933:3522..5365 | TCONS_00063516-exon-scaffold_391-1510915933:3522..5365 | Clytia hemisphaerica | exon |
| TCONS_00063516-exon-scaffold_391-1491911889:3522..5365 | TCONS_00063516-exon-scaffold_391-1491911889:3522..5365 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_391 | supercontig | scaffold_391:3522..5365 - |
Blast
The following BLAST results are available for this feature:
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