TCONS_00063503 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063503
Unique NameTCONS_00063503
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length506

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063503 ID=TCONS_00063503|Name=TCONS_00063503|organism=Clytia hemisphaerica|type=transcript|length=506bp
ATGATAGCTTGCTGCAAAGATCCTAATTCccattttcattattatatact
ttcaggttagttaCCATCATACTGCCCAATAACCTAGATCCATGAACTAT
TTTGTaccttcacgtggttggtaTACAATGagaattggcttaaaatttgt
cTGAATTTGTCGCGTACAAGTCTCAATATCTTTGAAAACACCAACAAATT
CTGCTAATAAGGTGGATGAGTGGAAACCATATTTAACTCAATGGAAACAA
CAATGGNNNNNNNNNNNNATGAGTGGAAACCATATTTAACTCAATGGAAA
CAACAATGGAATAATTCTATCAAATTGATTATGTGCATTATGTGTACCTA
ACAATTTGTTTCTATCTTGAATgtttttggattcaaatttttccCTGTAA
ACTGAATATCAATTTGTATCATATAGATCCTCTCTGGaaagtacatcttg
atttgattttgatatggtAATGGCTGTAATTGCCAATGAAAATGAGTTCT
TATGTN
Run BLAST on NCBI

transcript from alignment at scaffold_390:14709..15214

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063503 ID=TCONS_00063503|Name=TCONS_00063503|organism=Clytia hemisphaerica|type=transcript|length=506bp|location=Sequence derived from alignment at scaffold_390:14709..15214 (Clytia hemisphaerica)
NACATAAGAACTCATTTTCATTGGCAATTACAGCCATTaccatatcaaaa
tcaaatcaagatgtactttCCAGAGAGGATCTATATGATACAAATTGATA
TTCAGTTTACAGggaaaaatttgaatccaaaaacATTCAAGATAGAAACA
AATTGTTAGGTACACATAATGCACATAATCAATTTGATAGAATTATTCCA
TTGTTGTTTCCATTGAGTTAAATATGGTTTCCACTCATNNNNNNNNNNNN
CCATTGTTGTTTCCATTGAGTTAAATATGGTTTCCACTCATCCACCTTAT
TAGCAGAATTTGTTGGTGTTTTCAAAGATATTGAGACTTGTACGCGACAA
ATTCAgacaaattttaagccaattctCATTGTAtaccaaccacgtgaagg
tACAAAATAGTTCATGGATCTAGGTTATTGGGCAGTATGATGGtaactaa
cctgaaagtatataataatgaaaatggGAATTAGGATCTTTGCAGCAAGC
TATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039810XLOC_039810Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063503-exon-scaffold_390-1491911889:14709..15214TCONS_00063503-exon-scaffold_390-1491911889:14709..15214Clytia hemisphaericaexon
TCONS_00063503-exon-scaffold_390-1510915933:14709..15214TCONS_00063503-exon-scaffold_390-1510915933:14709..15214Clytia hemisphaericaexon
TCONS_00063503-exon-scaffold_390-1575043694:14709..15214TCONS_00063503-exon-scaffold_390-1575043694:14709..15214Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_390supercontigscaffold_390:14709..15214 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.31636	0.82605	0.985007	0.959994	9.29713	4.42129	5.41805	5.78327	1.13327	1.38235	0	0.518399	0.823979	0.741609	0.714149	0.964369	1.38041	1.05469	1.12888	3.26582	2.80101	2.36656	2.86874	3.86598	3.10631	1.95226	8.9758	4.91359	10.0388	5.68475
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063503 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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