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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063178 ID=TCONS_00063178|Name=TCONS_00063178|organism=Clytia hemisphaerica|type=transcript|length=1257bp
CCAAATTCACTAACCGATCACCTAAACGAATTCATCAGAACATTTAACTT
AACACCTATAGATATTACAAATGGTACCGGCCCATCATACACTTATCACC
ATGCTACGCTACCAAACCAGTCTTATATCGATCATATACTGGTATCGAAT
AACATCCTAGATAAAGTAACAAAAATCAACATATACTACAACAACACTAC
CTCAATACTAGCGACCACCTACCCATAGCTTGTAACATGAAAACTGACTT
CTCACCAAGCTTCAATCACGAAATAAATGACCCAAACGCCATTCCAAACT
ACCTATGGAAAAATGACATTTTTGTAAATAATTTCAAAGAAACTGTATCA
AAGCACCTATACCGCTCCAAAAACTCAAACATCACCGAAGAGATAACACA
TCTACATGACACATTAAACAACTGTGCTATTGAAACTTACAATAACCTTA
AGCTCTCTGACTTCCATTTCATTAAGACAAAACCGTGGTGGAACAAAGAA
CTTACAAAGAAAAGGAAAATTTTACAAAAGTGCTTTAATGATTGGAGAGA
CCGTAACTTTACCAGAGAACCATCAGACATCTCATATAATCGATATCTTC
TTGCAAGGAAGGACTTTCGCTCATCATCAAAAAGGTGCAAAAACCAAACA
ACTACGGATCACTTCATCAATGTAGAGAAAATTAAAACTTTCAAACCACG
TTCATATTGGAAACAAATCCGACTCCAAAATTCAAAGGATGACAAATTAT
ACACCATCAACAACAAATCAGACGTAAACGATATCAACCAAGAGTTTAGT
TCCCACTTTGATAACCTTCTGAACACACCCAGAACTGAAAACATCAATAA
CACTATTTCCAACAAAAAACTTCATGAGCTGCTAGCAGACCTTGAAAAGA
ACAAAACCTCCGACTTCTACGTATCAGCTACTGATGTTGAAGAAGCAATC
ATgagtttgaataaaaacaaaacctccGATCCTTTCAATATCAAAGCAGA
ACACTTCATTCACAGCATTTCTCCCAACATGCTATCCTACATTACACCCC
TCATCAACGACATTCTCAATACAACCGATCTACCACCGGCATTATCAACA
TCGATCATCGTCCCAATTATGAAATCAAGCAAAAAACCAATCCAAGATCC
AAACAACTACCGTGGAATCAGCCTGATCCCAATACTCACTAAAATCATGG
AGAAACTAATCATAAACAAATGTCCCTCACtgaaaaaccacaaaaactcT
CAATTTG Run BLAST on NCBI protein sequence of TCONS_00063178-protein >TCONS_00063178-protein ID=TCONS_00063178-protein|Name=TCONS_00063178-protein|organism=Clytia hemisphaerica|type=polypeptide|length=340bp
MKTDFSPSFNHEINDPNAIPNYLWKNDIFVNNFKETVSKHLYRSKNSNIT
EEITHLHDTLNNCAIETYNNLKLSDFHFIKTKPWWNKELTKKRKILQKCF
NDWRDRNFTREPSDISYNRYLLARKDFRSSSKRCKNQTTTDHFINVEKIK
TFKPRSYWKQIRLQNSKDDKLYTINNKSDVNDINQEFSSHFDNLLNTPRT
ENINNTISNKKLHELLADLEKNKTSDFYVSATDVEEAIMSLNKNKTSDPF
NIKAEHFIHSISPNMLSYITPLINDILNTTDLPPALSTSIIVPIMKSSKK
PIQDPNNYRGISLIPILTKIMEKLIINKCPSLKNHKNSQF Run BLAST on NCBI transcript from alignment at scaffold_383:221231..222487 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063178 ID=TCONS_00063178|Name=TCONS_00063178|organism=Clytia hemisphaerica|type=transcript|length=1257bp|location=Sequence derived from alignment at scaffold_383:221231..222487 (Clytia hemisphaerica)
CAAATTGAgagtttttgtggtttttcaGTGAGGGACATTTGTTTATGATT
AGTTTCTCCATGATTTTAGTGAGTATTGGGATCAGGCTGATTCCACGGTA
GTTGTTTGGATCTTGGATTGGTTTTTTGCTTGATTTCATAATTGGGACGA
TGATCGATGTTGATAATGCCGGTGGTAGATCGGTTGTATTGAGAATGTCG
TTGATGAGGGGTGTAATGTAGGATAGCATGTTGGGAGAAATGCTGTGAAT
GAAGTGTTCTGCTTTGATATTGAAAGGATCggaggttttgtttttattca
aactcATGATTGCTTCTTCAACATCAGTAGCTGATACGTAGAAGTCGGAG
GTTTTGTTCTTTTCAAGGTCTGCTAGCAGCTCATGAAGTTTTTTGTTGGA
AATAGTGTTATTGATGTTTTCAGTTCTGGGTGTGTTCAGAAGGTTATCAA
AGTGGGAACTAAACTCTTGGTTGATATCGTTTACGTCTGATTTGTTGTTG
ATGGTGTATAATTTGTCATCCTTTGAATTTTGGAGTCGGATTTGTTTCCA
ATATGAACGTGGTTTGAAAGTTTTAATTTTCTCTACATTGATGAAGTGAT
CCGTAGTTGTTTGGTTTTTGCACCTTTTTGATGATGAGCGAAAGTCCTTC
CTTGCAAGAAGATATCGATTATATGAGATGTCTGATGGTTCTCTGGTAAA
GTTACGGTCTCTCCAATCATTAAAGCACTTTTGTAAAATTTTCCTTTTCT
TTGTAAGTTCTTTGTTCCACCACGGTTTTGTCTTAATGAAATGGAAGTCA
GAGAGCTTAAGGTTATTGTAAGTTTCAATAGCACAGTTGTTTAATGTGTC
ATGTAGATGTGTTATCTCTTCGGTGATGTTTGAGTTTTTGGAGCGGTATA
GGTGCTTTGATACAGTTTCTTTGAAATTATTTACAAAAATGTCATTTTTC
CATAGGTAGTTTGGAATGGCGTTTGGGTCATTTATTTCGTGATTGAAGCT
TGGTGAGAAGTCAGTTTTCATGTTACAAGCTATGGGTAGGTGGTCGCTAG
TATTGAGGTAGTGTTGTTGTAGTATATGTTGATTTTTGTTACTTTATCTA
GGATGTTATTCGATACCAGTATATGATCGATATAAGACTGGTTTGGTAGC
GTAGCATGGTGATAAGTGTATGATGGGCCGGTACCATTTGTAATATCTAT
AGGTGTTAAGTTAAATGTTCTGATGAATTCGTTTAGGTGATCGGTTAGTG
AATTTGG Coding sequence (CDS) from alignment at scaffold_383:221231..222487 >TCONS_00063178 ID=TCONS_00063178|Name=TCONS_00063178|organism=Clytia hemisphaerica|type=CDS|length=1020bp|location=Sequence derived from alignment at scaffold_383:221231..222487 (Clytia hemisphaerica)
AAATTGAgagtttttgtggtttttcaGTGAGGGACATTTGTTTATGATTA
GTTTCTCCATGATTTTAGTGAGTATTGGGATCAGGCTGATTCCACGGTAG
TTGTTTGGATCTTGGATTGGTTTTTTGCTTGATTTCATAATTGGGACGAT
GATCGATGTTGATAATGCCGGTGGTAGATCGGTTGTATTGAGAATGTCGT
TGATGAGGGGTGTAATGTAGGATAGCATGTTGGGAGAAATGCTGTGAATG
AAGTGTTCTGCTTTGATATTGAAAGGATCggaggttttgtttttattcaa
actcATGATTGCTTCTTCAACATCAGTAGCTGATACGTAGAAGTCGGAGG
TTTTGTTCTTTTCAAGGTCTGCTAGCAGCTCATGAAGTTTTTTGTTGGAA
ATAGTGTTATTGATGTTTTCAGTTCTGGGTGTGTTCAGAAGGTTATCAAA
GTGGGAACTAAACTCTTGGTTGATATCGTTTACGTCTGATTTGTTGTTGA
TGGTGTATAATTTGTCATCCTTTGAATTTTGGAGTCGGATTTGTTTCCAA
TATGAACGTGGTTTGAAAGTTTTAATTTTCTCTACATTGATGAAGTGATC
CGTAGTTGTTTGGTTTTTGCACCTTTTTGATGATGAGCGAAAGTCCTTCC
TTGCAAGAAGATATCGATTATATGAGATGTCTGATGGTTCTCTGGTAAAG
TTACGGTCTCTCCAATCATTAAAGCACTTTTGTAAAATTTTCCTTTTCTT
TGTAAGTTCTTTGTTCCACCACGGTTTTGTCTTAATGAAATGGAAGTCAG
AGAGCTTAAGGTTATTGTAAGTTTCAATAGCACAGTTGTTTAATGTGTCA
TGTAGATGTGTTATCTCTTCGGTGATGTTTGAGTTTTTGGAGCGGTATAG
GTGCTTTGATACAGTTTCTTTGAAATTATTTACAAAAATGTCATTTTTCC
ATAGGTAGTTTGGAATGGCGTTTGGGTCATTTATTTCGTGATTGAAGCTT
GGTGAGAAGTCAGTTTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063178-exon-scaffold_383-1491911889:221231..222487 | TCONS_00063178-exon-scaffold_383-1491911889:221231..222487 | Clytia hemisphaerica | exon |
| TCONS_00063178-exon-scaffold_383-1510915933:221231..222487 | TCONS_00063178-exon-scaffold_383-1510915933:221231..222487 | Clytia hemisphaerica | exon |
| TCONS_00063178-exon-scaffold_383-1575043694:221231..222487 | TCONS_00063178-exon-scaffold_383-1575043694:221231..222487 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_383 | supercontig | scaffold_383:221231..222487 . |
Blast
The following BLAST results are available for this feature:
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