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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063094 ID=TCONS_00063094|Name=TCONS_00063094|organism=Clytia hemisphaerica|type=transcript|length=2879bp
GCTGGTTATTCAGCCAAAACATTCCAAACTGCGTTACCCTTTATTTTAAA
ACGAAAACAACTGGGTTCTTGATATGATTGTGTATATGATTGTGTATATG
ATTGACGTTTGTTCTGGTTAGCCAATCACCACGCTTAAAAGCTCATTTAC
TACTgattccaaaaataaaaaaagataaaagggcTCGCTCTTGGGTAGAT
ACTCTTATACGGAGTCATGAACTTTAGAGTACATGCGTGTTTGCACGGAG
TAATCAGAATCTCTTCGGAGATTAGCAAGATGGTAAGACAGAAAATGATA
AACTATAcaaaaaaccctaaaattgTACCTATTTAGCGTGTTTCGACAAT
CAAGTCAATAACAAGCAAGAATTATTAGAAACTGGCAACTTTCACTTAAT
CATTCTTTGTATTTGATGAAAGTGCGTTATTAACCAGATTGTTCAATCGC
TGAGTGACATTTTCTTTATTCAGAAACCCTGTATTATGACCTGGTTTCCC
AAAATGTTTGTGTGGTATGTATCTGTGTTAATGCGATTGTagaaaatact
tagaaaacacttcaacattttaaaatacaaaaaaagttcCCGATTTCGAT
ATCGCTGAtgtatgtttgatttttaccgagattagggctttgaaaggtgc
gaaaaactcttcgttttcttcttcgtttaattttttcatttcaatttttc
gatttttaaattctaaaaaagtaggtttaacaggacatataaaaaaagtt
atacattaatctttttaaaatgcagaaattgccatttaagttggtgtaaa
atcgaaaaattgggtatatccagagcccttaaggctAAAGACTCAAGTAC
ACTTTTAAgcattgagttttaagcccaTGAAGGGCTCAAATAAATGATCG
AAAAAGGAAACTTTAGAGTTTGCGTTACATATCGGACGATTGATTGAATC
TTgttatttctttttgttttagcTCCGTtacttttttcgaaatctagaTT
CCTTTCTAGCTCTTCGGGATTCAATGCTCTTGAGCTTCACAATCCATATC
GAACTTGATAGCTACTACGTCTTCATCAGTAAGATTTTCTATCAATTTAT
GATCAAAGGTTTTTGAAACTCCCAAATCTTTACCTTCATCACCAATGGGT
CGTATGAAATTATCTTTCCATTTACCTCCATCATCTGAATTTTGGCTTGA
CTTCTTTCCGATTTCTCTGTTGTTAACAAGAAGTGTCATTGAGTGCGATT
TCCAAGGTATTGgccatttcaaaaaattatcataTGGTCCTTTTAGGTTC
TGAAAGAACACTGACACGTGATTGTCTTGAGCACTGCGATACCCATTTAA
ATAGATATTTAGACGTCCTAAGTACCCATTTACAGTGAGGAAGTTTGGAG
AGGAagttcttttatttgtttttttagccTCTTCAAATTGGAATTTGAAA
TTCTCGATAGTGAAAGAATAAGGGCATTGTGGTAAGCTTAAAATCTGCAA
TGTCAGTTTGTTTTCTTCGGctagttttttgtttaaattatGAACATGAT
CACTCCTTTCCCTCAGTGATCCGTTTATAAATTCATGAGTGTTTTTATCC
GTAATATAAAGCATCATAGATATAATTTCCATTGATTTGTTTAGAGCTTT
CTGTTGTTCAGTTTTGGTTTCATTGACAACTCGGGTGAAATCCTTTTTGG
TTTCTTCAATGGCTTTTTGTTGTTCAGTTTTGGTTTGATTCACAACTCGG
TTGAAATCCTTTTTGGTTTCTTCGATGGCTTTCTCTTGTTCGGTCTTTAT
TTCATTGACAACTCGggtgaaattatttttaatttcttccATGGCTTTTT
GTTGTTCAGTTTTAGTTTGATTGGTAACTCGGGTGAAATCCTTCTTGGTT
TCTTCGCTGGCTTTTTGTTGTTCAATTTTAGTTTCATCGATAGCTCGGTT
GAAATCCTTTTTGGTTTCTTCGATGGCTTTTTGTTGTTCAGTTTTAGTTT
CATCGATAACTTGGGTGAAATCCTTTTTGGTTTCTTCGATGGCTTTTTGT
TGTTCAGTATTAGTTTCATCGATAACTCGGGTGACATCCTTTTTGGTTTC
TTCGATGGCTTTTTGTTGTTCAGTTTTAGTTTCATCGATAGCTCGGTTGA
AATCCTTTTTGGTTTCTGCGATGGCTTTTTGTTGTTCAATTTTAGTTTCA
TCGATAACTCGGGTGAAATCCTTTTTGGTTTCTTCGATGGCTTTTTGTTG
TTCAATTTTAGTTTCATCGATAACTCGGGTGATATCCTTTTTGGTTTCTT
CGATGGCTTTTTGTTGCTCAATTTTAGTTTCATCGATAACTCGGGTGACA
TCCTTTTTGGTTTCTTCGATGGCTTTTTGTTGCTCAATTTTAGTTTCATC
GATAACTCGGGTGGCATCCTTTTTGGTTTCTTCGATGGCTTTTTGTTGCT
CAATTTTGGTTTGATTCACAACTCGGTTGAAATCCTTTTTGGTTTCTTGG
ATGGCTTTCTCTTGTTCGGTCTTTATTTCATTGACAACTCCGATGAAGTC
CTTTTTGGTTTCTTCGATGGCTTTGTGGTTCTCATTGTTTTCATTGGAAG
CTCGTTGGAGATCCTTTTTAGCGCCATCGACATCTTCTCTCAATCGTTTG
ATTTCGTCATCTTTTTCCTTCAGTTGGCAGTCAAACTTTTCAGAcagatt
ttggattttttcatcTCTTTCCTTCTGTTGGGCATCAAACTCCTTTGTTA
TCTCTTGAATTTTGAGATCTTTTTCGTGTAATTTGTCACTGAATTCTTGT
TTGAGGTTTCGAATTTCATGCTTCATTTCAAGGGAGAAATGTTGATTGAT
CGCTCGTGATATGTGATTGTACAGTTGGT Run BLAST on NCBI transcript from alignment at scaffold_38:275822..279030+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063094 ID=TCONS_00063094|Name=TCONS_00063094|organism=Clytia hemisphaerica|type=transcript|length=3209bp|location=Sequence derived from alignment at scaffold_38:275822..279030+ (Clytia hemisphaerica)
GCTGGTTATTCAGCCAAAACATTCCAAACTGCGTTACCCTTTATTTTAAA
ACGAAAACAACTGGGTTCTTGATATGATTGTGTATATGATTGTGTATATG
ATTGACGTTTGTTCTGGTTAGCCAATCACCACGCTTAAAAGCTCATTTAC
TACTgattccaaaaataaaaaaagataaaagggcTCGCTCTTGGGTAGAT
ACTCTTATACGGAGTCATGAACTTTAGAGTACATGCGTGTTTGCACGGAG
TAATCAGAATCTCTTCGGAGATTAGCAAGATGGTAAGACAGAAAATGATA
AACTATAcaaaaaaccctaaaattgTACCTATTTAGCGTGTTTCGACAAT
CAAGTCAATAACAAGCAAGAATTATTAGAAACTGGCAACTTTCACTTAAT
CATTCTTTGTATTTGATGAAAGTGCGTTATTAACCAGATTGTTCAATCGC
TGAGTGACATTTTCTTTATTCAGAAACCCTGTATTATGACCTGGTTTCCC
AAAATGTTTGTGTGGTATGTATCTGTGTTAATGCGATTGTagaaaatact
tagaaaacacttcaacattttaaaatacaaaaaaagttcCCGATTTCGAT
ATCGCTGAtgtatgtttgatttttaccgagattagggctttgaaaggtgc
gaaaaactcttcgttttcttcttcgtttaattttttcatttcaatttttc
gatttttaaattctaaaaaagtaggtttaacaggacatataaaaaaagtt
atacattaatctttttaaaatgcagaaattgccatttaagttggtgtaaa
atcgaaaaattgggtatatccagagcccttaaggctAAAGACTCAAGTAC
ACTTTTAAgcattgagttttaagcccaTGAAGGGCTCAAATAAATGATCG
AAAAAGGAAACTTTAGAGTTTGCGTTACATATCGGACGATTGATTGAATC
TTgttatttctttttgttttagcTCCGTtacttttttcgaaatctagaTT
CCTTTCTAGCTCTTCGGGATTCAATGCTCTTGAGCTTCACAATCCATATC
GAACTTGATAGCTACTACGTCTTCATCAGTAAGATTTTCTATCAATTTAT
GATCAAAGGTTTTTGAAACTCCCAAATCTTTACCTTCATCACCAATGGGT
CGTATGAAATTATCTTTCCATTTACCTCCATCATCTGAATTTTGGCTTGA
CTTCTTTCCGATTTCTCTGTTGTTAACAAGAAGTGTCATTGAGTGCGATT
TCCAAGGTATTGgccatttcaaaaaattatcataTGGTCCTTTTAGGTTC
TGAAAGAACACTGACACGTGATTGTCTTGAGCACTGCGATACCCATTTAA
ATAGATATTTAGACGTCCTAAGTACCCATTTACAGTGAGGAAGTTTGGAG
AGGAagttcttttatttgtttttttagccTCTTCAAATTGGAATTTGAAA
TTCTCGATAGTGAAAGAATAAGGGCATTGTGGTAAGCTTAAAATCTGCAA
TGTCAGTTTGTTTTCTTCGGctagttttttgtttaaattatGAACATGAT
CACTCCTTTCCCTCAGTGATCCGTTTATAAATTCATGAGTGTTTTTATCC
GTAATATAAAGCATCATAGATATAATTTCCATTGATTTGTTTAGAGCTTT
CTGTTGTTCAGTTTTGGTTTCATTGACAACTCGGGTGAAATCCTTTTTGG
TTTCTTCAATGGCTTTTTGTTGTTCAGTTTTGGTTTGATTCACAACTCGG
TTGAAATCCTTTTTGGTTTCTTCGATGGCTTTCTCTTGTTCGGTCTTTAT
TTCATTGACAACTCGggtgaaattatttttaatttcttccATGGCTTTTT
GTTGTTCAGTTTTAGTTTGATTGGTAACTCGGGTGAAATCCTTCTTGGTT
TCTTCGCTGGCTTTTTGTTGTTCAATTTTAGTTTCATCGATAGCTCGGTT
GAAATCCTTTTTGGTTTCTTCGATGGCTTTTTGTTGTTCAGTTTTAGTTT
CATCGATAACTTGGGTGAAATCCTTTTTGGTTTCTTCGATGGCTTTTTGT
TGTTCAGTATTAGTTTCATCGATAACTCGGGTGACATCCTTTTTGGTTTC
TTCGATGGCTTTTTGTTGTTCAGTTTTAGTTTCATCGATAGCTCGGTTGA
AATCCTTTTTGGTTTCTGCGATGGCTTTTTGTTGTTCAATTTTAGTTTCA
TCGATAACTCGGGTGAAATCCTTTTTGGTTTCTTCGATGGCTGTTTGTTG
TTCAGTTTTAGTTTCATCGATAACTCGGGTGAAATCCTTTTTGGTTTCTG
CGATGGCTTTTTGTTGTTCAATTTTAGTTTCATCGATAACTCGGGTGAAA
TCCTTTTTGGTTTCTTCGATGGCTGTTTGTTGTTCAGTTTTAGTTTCATC
GATAACTCGGGTGAAATCCTTTTTGGTTTCTTCGATAGCTTTTTGTTGTT
CAGTTTTAGTTTCATCGATAACTCGGGTGAAATCCTTTTTGGTTTCTGCG
ATGGCTTTTTGTTGTTCAATTTTAGTTTCATCGATAACTCGGGTGACATC
CTTTTTGGTTTCTTCGATGGCTTTTTGTTGTTCAATTTTAGTTTCATCGA
TAACTCGGGTGATATCCTTTTTGGTTTCTTCGATGGCTTTTTGTTGCTCA
ATTTTAGTTTCATCGATAACTCGGGTGACATCCTTTTTGGTTTCTTCGAT
GGCTTTTTGTTGCTCAATTTTAGTTTCATCGATAACTCGGGTGGCATCCT
TTTTGGTTTCTTCGATGGCTTTTTGTTGCTCAATTTTGGTTTGATTCACA
ACTCGGTTGAAATCCTTTTTGGTTTCTTGGATGGCTTTCTCTTGTTCGGT
CTTTATTTCATTGACAACTCCGATGAAGTCCTTTTTGGTTTCTTCGATGG
CTTTGTGGTTCTCATTGTTTTCATTGGAAGCTCGTTGGAGATCCTTTTTA
GCGCCATCGACATCTTCTCTCAATCGTTTGATTTCGTCATCTTTTTCCTT
CAGTTGGCAGTCAAACTTTTCAGAcagattttggattttttcatcTCTTT
CCTTCTGTTGGGCATCAAACTCCTTTGTTATCTCTTGAATTTTGAGATCT
TTTTCGTGTAATTTGTCACTGAATTCTTGTTTGAGGTTTCGAATTTCATG
CTTCATTTCAAGGGAGAAATGTTGATTGATCGCTCGTGATATGTGATTGT
ACAGTTGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063094-exon-scaffold_38-1491911889:275822..278038 | TCONS_00063094-exon-scaffold_38-1491911889:275822..278038 | Clytia hemisphaerica | exon |
| TCONS_00063094-exon-scaffold_38-1510915933:275822..278038 | TCONS_00063094-exon-scaffold_38-1510915933:275822..278038 | Clytia hemisphaerica | exon |
| TCONS_00063094-exon-scaffold_38-1575043694:275822..278038 | TCONS_00063094-exon-scaffold_38-1575043694:275822..278038 | Clytia hemisphaerica | exon |
| TCONS_00063094-exon-scaffold_38-1491911889:278369..279030 | TCONS_00063094-exon-scaffold_38-1491911889:278369..279030 | Clytia hemisphaerica | exon |
| TCONS_00063094-exon-scaffold_38-1510915933:278369..279030 | TCONS_00063094-exon-scaffold_38-1510915933:278369..279030 | Clytia hemisphaerica | exon |
| TCONS_00063094-exon-scaffold_38-1575043694:278369..279030 | TCONS_00063094-exon-scaffold_38-1575043694:278369..279030 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_38 | supercontig | scaffold_38:275822..279030 + |
Blast
The following BLAST results are available for this feature:
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