TCONS_00063072 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063072
Unique NameTCONS_00063072
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length397

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063072 ID=TCONS_00063072|Name=TCONS_00063072|organism=Clytia hemisphaerica|type=transcript|length=397bp
GGTAAAtgcacaaaaatattcaaaataagaacaagaatTCGAAGGCTTTc
taaattttggatgttcttataaaaacatgtattctgCTCGAGGGGTGATA
ATGTATGTAGTGGTAATTGAATTCTGAACTTGGCTTCGAAATAATGTATA
TTCTACACTCCAGTCTCTACAAATTTTACTAATTGCTAAAAGCCTCTAAT
CCTATGAGAATAAAATAATGTTTATATTGTAAATGCAgagaatttctttc
aaaaatctaagtgcaaaaattatcgaaaaaagacctaaaaattatgcaaa
gaaaagctataaataaaattttaaccaaaattatGCAATTTAGCACAGTA
TTAACTCGTTTAAAACGCTTCAGACAaacaagaaaattcgaaaaatt
Run BLAST on NCBI

transcript from alignment at scaffold_379:32392..32788

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063072 ID=TCONS_00063072|Name=TCONS_00063072|organism=Clytia hemisphaerica|type=transcript|length=397bp|location=Sequence derived from alignment at scaffold_379:32392..32788 (Clytia hemisphaerica)
aatttttcgaattttcttgttTGTCTGAAGCGTTTTAAACGAGTTAATAC
TGTGCTAAATTGCataattttggttaaaattttatttatagcttttcttt
gcataatttttaggtcttttttcgataatttttgcacttagatttttgaa
agaaattctcTGCATTTACAATATAAACATTATTTTATTCTCATAGGATT
AGAGGCTTTTAGCAATTAGTAAAATTTGTAGAGACTGGAGTGTAGAATAT
ACATTATTTCGAAGCCAAGTTCAGAATTCAATTACCACTACATACATTAT
CACCCCTCGAGcagaatacatgtttttataagaacatccaaaatttagAA
AGCCTTCGAattcttgttcttattttgaatatttttgtgcaTTTACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039503XLOC_039503Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063072-exon-scaffold_379-1491911889:32392..32788TCONS_00063072-exon-scaffold_379-1491911889:32392..32788Clytia hemisphaericaexon
TCONS_00063072-exon-scaffold_379-1510915933:32392..32788TCONS_00063072-exon-scaffold_379-1510915933:32392..32788Clytia hemisphaericaexon
TCONS_00063072-exon-scaffold_379-1575043694:32392..32788TCONS_00063072-exon-scaffold_379-1575043694:32392..32788Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_379supercontigscaffold_379:32392..32788 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.39681	2.3923	1.70935	2.5085	0.254488	0.2011	0.727855	0	1.11316	1.77279	0.57357	1.63385	0.502024	1.17305	0.964409	1.26495	1.55831	1.01641	0.802418	1.04959	0.547371	0.800965	1.94735	1.96714	0	0	4.91645	0.828469	2.51346	1.28041
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063072 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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