TCONS_00006223 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006223
Unique NameTCONS_00006223
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length824

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006223 ID=TCONS_00006223|Name=TCONS_00006223|organism=Clytia hemisphaerica|type=transcript|length=824bp
GAAACATTTTGTATGGAGTGTTCAGTTTCAGTCGCAGTTTTGGACTTGAA
ATCATCTCAGCATGTATTCTATCTTAGCACTTTTATGTTTGGTTGTTTCA
ACCCAAGCCTTCTTCGGTAAAAGACCGTACCCTGACTGGGATCAACTCAG
CGTGACCTTCCCAAATTACCATGGCATGCCACAAAACGAAGAAGAAGCAC
GAAGTCAAGGATGGAAATTTGTCAGCGATGGATGTACTTCAGCTACCAAT
TTCAAAGGCAAACGATACAGTTCACCGGATGGACCTAACAGCCTGTTGTT
TGACCCAGTTGGAAATATGGCTGGAATTCAACTTGCTTTCCCAGACAATT
CTAAGAGTCCAAAAGGATGGTCAAAAGCTTTTGTTAAAGAAGGAAAATCA
GTCGTCTTGACCGCATATTTTACTGACCCAAATTTAATCTGCTCCGGAAA
ACGAATCGCACCAAAAGGTTACGTTGGAGATAATCTTTATCTTGTGATGA
ACAATGGACCTGTCAAAATCCCATTGAAAGAATCAGATATTGGAGCCACC
AAATGGACCAAAGGAAAATGCTTCTATGGAATGGGACAACATTACTGGTA
TGATGTTTCAAAGGGTATGGATTGCCAGAATTTCGGTCCATGGTTCTTGT
TGTACAACGGTGGAAATTTGAATGCTTTTGGGTTtgcaaactttgaagat
atggTCAACAAATATGTTGAAAACCCACCGCAAAGGGCTATCCGACTTTT
CTTCCAAGAGAAGCCAGTTTGCATCGAGAAGCAACCTCATTTGACCACGC
AACACATCTATCTTCAAAGAAGAC
Run BLAST on NCBI

transcript from alignment at sc0000066:204296..208053+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006223 ID=TCONS_00006223|Name=TCONS_00006223|organism=Clytia hemisphaerica|type=transcript|length=3758bp|location=Sequence derived from alignment at sc0000066:204296..208053+ (Clytia hemisphaerica)
GAAACATTTTGTATGGAGTGTTCAGTTTCAGTCGCAGTTTTGGACTTGAA
ATCATCTCAGCATGTATTCTATCTTAGCACTTTTATGTTTGGTTGTTTCA
ACCCAAGCCTTCTTCGGTAAAAGACGTAAGATCACACCGCAATTTTTTTA
CTCTAAAATTTAGCTTTTCTTTGGTGGGAAGAAGGCCTGATTCTCGaatt
tgtccgaaaacgaaattCGGGAGCGTTTGGCTTTTGTTGTGGAGTGTCAT
CTTTCCTATTTAGAAGCCAGATATTCCAATCTTCCTCCAGGCGCACCAAA
TTGGCAATTGGTTTGCGGTACTAAAGTGATCTTTTTATTCAAAGTCTAGA
GGAGTTGAGACCTCGTAGCAATCTTCCATCAACTTATATTATTTCTTTCT
AATTATTTTAGCGTACCCTGACTGGGATCAACTCAGCGGTaagttttata
tttataaatttaCAAAAGGAGAAAAATAGTTCCATTTCTTTAGCTATTAG
TAAATGATATAAGAAAAAATCGAATTCGTTTGGAGATGTCAGTACCTTAA
CCGATAGGGAAGTTTCAAACATTACTGATCGATGTCTTTTCTATTCAGTG
ACCTTCCCAAATTACCATGGCATGCCACAAAACGAAGAAGAAGCACGAAG
TCAAGGATGGAAATTTGTCAGCGATGGATGTACTTCAGGTTTGTTTCCTT
GTTAAAATATATCTATCTAACTTTAAAACAAATACAGACCAACATAGCTT
CAACACAATCTGAGTACAAAAAAGTACTTTACCCAGCCCTCTTTCAAAAT
TGCTGGTTTTTTACAGCAAAGAGTACTTCGAGGACCTCGCTTTTAGACCT
CTGTTTCAGAAAAGAATTTGTTAAAATCTGGAATAAAGATGATTAAAAGT
CGATAAATCGTGTAAGTTTCTTGTCCATGAATTTCTCGAAAGACCTATTC
TCATGTTTATCATTCCGAAATGCAAAAATGCCAAATATACCTTATTCGCG
TTCCCGGGAAAGCTTCCCCTGCTTATGTAACCTTCGCTTTCTCATGCAGC
TACCAATTTCAAAGGCAAACGATACAGTTCACCGGATGGACCTAACAGCC
TGTTGTTTGACCCAGTTGGAAATATGGCTGGAATTCAACTTGCTGTAAGT
AATTACAATTCTGGTAAACTCAGTGGTTGATGAATTGAATGTTggtttta
aagtattttttgggGAGAAGGAGGAATAGactttatcggagtttttgatt
tttctaaaaaagcgatgcattgtgggattgtttcgagtgtaataaaatag
aaatctcttaggaattcatCGAgtgaattctattgtaatacactcgaaac
aatcccacaatgcatcgcttttttagaaaaatcaaaaactccgataaggt
ctattgataTCTATAAATGGAGAAAATGAATTAAACACGTTATCTTCTTT
GATGAATCATACAAACACTTAACACCCGGTAAGAATTTTTCTGCCAGTGA
GGGTGaaataatggactgaaactcgatggggattgttATTCCCATGTTAT
TTATGGCAGGGTacttgaattccattgtttttaagtcagaaaattcagtg
atgatggaaaaatagcacaatatttttcaaagaggatttctctttatttt
gattattttcagtggggacaaaattggagtacaattttctacttgggacg
atattttgaccgattttttccagtgggaaggggtttCACCGGGTTAGTGA
GAAAGGAGTGTAATCAAGGAGAAAAGAAATCTAAGATAGAGCAGACAACA
TATTTCAAGACCATAATTTAAGCTCGTCCcaagcaataaaaaataaactg
aTTCTTACCAGAAGGTCCTATACATGTACCATGTACCAAATAATAGCATC
AAAACATACTTTATTTTAGTTCCCAGACAATTCTAAGAGTCCAAAAGGAT
GGTCAAAAGCTTTTGTTAAAGAAGGAAAATCAGTCGTCTTGACCGCATAT
TTTACTGACCCAAATTTAATCTGCTCCGGAAAACGAATCGCACCAAAAGG
TTACGTTGGAGATAATCTTTATCTTGTGATGAACAATGGACCTGTCAAAA
TCCCATTGAAAGAATCAGATATTGGAGCCACCAAATGGACCAAAGGAAAA
TGCTTCTATGGAATGGGTAAGAATATTTGTATTCTCTATACAAAACATTC
ATACACAAAAACCAATACTACGATAACTTTACGGACAAATCTTTCTTGGG
AAAAAACTTTGCAATTCATGGTCAAGATAACGTCTCAATTTCCAACACCT
TAATATCTGCAATGGTATaaatctttttggaaatttcgtAATTTTACCGA
TTCGGGGCCATAATCGCGACAGACACCGGAGAAAAGGACAAAGATCTTCA
GGTATAAAGTGAATAACGGAGGGTTGaactttaaaacttgaaagttctCA
AAGTAGACAACAACCGTTTTTTTCTTAGGACAACATTACTGGTATGATGT
TTCAAAGGGTATGGATTGCCAGAATTTCGGTCCATGGTTCTTGTTGTACA
ACGGTGGAAATTTGAATGCTTTTGGGTTtgcaaactttgaagatatggTC
AACAAATATGTTGAAAACCCACCGCAAAGGGCTATCCGAGTAAGTATAAA
CCGATTGATGGAAGCTAGAAAGGGTCAGAATTTAGAACCAGAGgggaaat
acaccttttcgaccgtagccgccaattgttgcgcgggcatttttttgtcc
gttttaccaccctaaaaccatcccagtctttttttcgcacctaaagacaa
tagaaaaaagtgtaaaaaaaggattggatcgagtttagggtggtaaatta
aataataaaatggaacgcgcctgaccgcgcgactacggtcgaaaaggtgt
attatataTTTGATTCCACATCAGATTTCATCGCAtgatctgtcaatcaa
agtcGAACAAATAGCTATTCAAGTTGATCGAATATGAATCACTGGAATCA
AATCgactttttacgtttttcggaTTGCGATTCAATTGAATTTGCCCAAT
CGAATCAGTTTAATTGAATTTCAATTACCGATCAAAGTCATATTCGCTCC
AATTATTCCCCAGATTTGGGCGGTAAGAGCTAAGATTCAATCTTGAATTT
GTACCTTATAAAATTTAAAGTGTCACCATATGCTCTTCATACAGACAATC
TGAATAACCTTTATTCaagcaaagaaaatagtaaatgTTTTCGTATGTCC
AAATCAAGGCCAATCCGTAAAACAGAattcatccgccaaattaaattccc
actaaatttagtttttcaagttaaccgccaaattaaattcccactaaatt
tagtttttcaagttaaccgccaaaataaattcccactaaatttagttttt
caagttaaccgccaaaataaattcccactaaatttagtttttcatgttaa
ccgccaaattaaattccctctgaaaaaactttttcggtcaTCCACCAAAt
aaaattcccgccaaaatttcttccttaagGTAATTGAAAGATTTTCCATA
ACATCGTAACGGAATTTTTAGCAGGGAGAAGCCTTTCTACATGACCATGT
GAATAAGATGACAAGAAAGGCGATGCGATGAGTCAATAAGGCTATGGCTA
CTGATCTAACACTATTTATTTCGTTTTAGCTTTTCTTCCAAGAGAAGCCA
GTTTGCATCGAGAAGCAACCTCATTTGACCACGCAACACATCTATCTTCA
AAGAAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003569XLOC_003569Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006223-exon-sc0000066-1491911889:204296..204420TCONS_00006223-exon-sc0000066-1491911889:204296..204420Clytia hemisphaericaexon
TCONS_00006223-exon-sc0000066-1510915933:204296..204420TCONS_00006223-exon-sc0000066-1510915933:204296..204420Clytia hemisphaericaexon
TCONS_00006223-exon-sc0000066-1575043694:204296..204420TCONS_00006223-exon-sc0000066-1575043694:204296..204420Clytia hemisphaericaexon
TCONS_00006223-exon-sc0000066-1491911889:204707..204733TCONS_00006223-exon-sc0000066-1491911889:204707..204733Clytia hemisphaericaexon
TCONS_00006223-exon-sc0000066-1510915933:204707..204733TCONS_00006223-exon-sc0000066-1510915933:204707..204733Clytia hemisphaericaexon
TCONS_00006223-exon-sc0000066-1575043694:204707..204733TCONS_00006223-exon-sc0000066-1575043694:204707..204733Clytia hemisphaericaexon
TCONS_00006223-exon-sc0000066-1491911889:204894..204983TCONS_00006223-exon-sc0000066-1491911889:204894..204983Clytia hemisphaericaexon
TCONS_00006223-exon-sc0000066-1510915933:204894..204983TCONS_00006223-exon-sc0000066-1510915933:204894..204983Clytia hemisphaericaexon
TCONS_00006223-exon-sc0000066-1575043694:204894..204983TCONS_00006223-exon-sc0000066-1575043694:204894..204983Clytia hemisphaericaexon
TCONS_00006223-exon-sc0000066-1491911889:205345..205439TCONS_00006223-exon-sc0000066-1491911889:205345..205439Clytia hemisphaericaexon
TCONS_00006223-exon-sc0000066-1510915933:205345..205439TCONS_00006223-exon-sc0000066-1510915933:205345..205439Clytia hemisphaericaexon
TCONS_00006223-exon-sc0000066-1575043694:205345..205439TCONS_00006223-exon-sc0000066-1575043694:205345..205439Clytia hemisphaericaexon
TCONS_00006223-exon-sc0000066-1491911889:206215..206461TCONS_00006223-exon-sc0000066-1491911889:206215..206461Clytia hemisphaericaexon
TCONS_00006223-exon-sc0000066-1510915933:206215..206461TCONS_00006223-exon-sc0000066-1510915933:206215..206461Clytia hemisphaericaexon
TCONS_00006223-exon-sc0000066-1575043694:206215..206461TCONS_00006223-exon-sc0000066-1575043694:206215..206461Clytia hemisphaericaexon
TCONS_00006223-exon-sc0000066-1491911889:206774..206934TCONS_00006223-exon-sc0000066-1491911889:206774..206934Clytia hemisphaericaexon
TCONS_00006223-exon-sc0000066-1510915933:206774..206934TCONS_00006223-exon-sc0000066-1510915933:206774..206934Clytia hemisphaericaexon
TCONS_00006223-exon-sc0000066-1575043694:206774..206934TCONS_00006223-exon-sc0000066-1575043694:206774..206934Clytia hemisphaericaexon
TCONS_00006223-exon-sc0000066-1491911889:207975..208053TCONS_00006223-exon-sc0000066-1491911889:207975..208053Clytia hemisphaericaexon
TCONS_00006223-exon-sc0000066-1510915933:207975..208053TCONS_00006223-exon-sc0000066-1510915933:207975..208053Clytia hemisphaericaexon
TCONS_00006223-exon-sc0000066-1575043694:207975..208053TCONS_00006223-exon-sc0000066-1575043694:207975..208053Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:204296..208053 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	1.25363	0	0	0	0	0	450.353	467.521	88.8426	187.115	6.74722	8.11401	1220.14	1001.58	137.766	141.447	62.1495	97.7802	127.759	112.883	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006223 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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