TCONS_00063012 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063012
Unique NameTCONS_00063012
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length339

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063012 ID=TCONS_00063012|Name=TCONS_00063012|organism=Clytia hemisphaerica|type=transcript|length=339bp
CAATAGCTATAACGCTCATTCCATTTGACGAGCAGTGGTCCATCCAATAA
TCCACAAATTCCACCCAGTCCAAAAAATGTGTCTTCATCTCTGGTTTAAT
CTCTGCAACAGCATCACAAACCGGCTCTGTACAAAACGCCCTGGATAAAA
CCATAAGGGCGGCATCTCGGTAAGCCGGTGTTAACACGTGATACGAGAAT
CTACCTTCGTTGAAAATCAGAGTTTCTtccatttcaacaacaaaaatttt
tacAAGAGATTCTGATGACTGAAACGTCTGAAGTTTCTGAAAACGTTAAA
GCAATTGATGAAGTAATTTATGATATTCTTTTCGACCCT
Run BLAST on NCBI

transcript from alignment at scaffold_375:389440..389778

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063012 ID=TCONS_00063012|Name=TCONS_00063012|organism=Clytia hemisphaerica|type=transcript|length=339bp|location=Sequence derived from alignment at scaffold_375:389440..389778 (Clytia hemisphaerica)
AGGGTCGAAAAGAATATCATAAATTACTTCATCAATTGCTTTAACGTTTT
CAGAAACTTCAGACGTTTCAGTCATCAGAATCTCTTgtaaaaatttttgt
tgttgaaatggaAGAAACTCTGATTTTCAACGAAGGTAGATTCTCGTATC
ACGTGTTAACACCGGCTTACCGAGATGCCGCCCTTATGGTTTTATCCAGG
GCGTTTTGTACAGAGCCGGTTTGTGATGCTGTTGCAGAGATTAAACCAGA
GATGAAGACACATTTTTTGGACTGGGTGGAATTTGTGGATTATTGGATGG
ACCACTGCTCGTCAAATGGAATGAGCGTTATAGCTATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039472XLOC_039472Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063012-exon-scaffold_375-1491911889:389440..389778TCONS_00063012-exon-scaffold_375-1491911889:389440..389778Clytia hemisphaericaexon
TCONS_00063012-exon-scaffold_375-1510915933:389440..389778TCONS_00063012-exon-scaffold_375-1510915933:389440..389778Clytia hemisphaericaexon
TCONS_00063012-exon-scaffold_375-1575043694:389440..389778TCONS_00063012-exon-scaffold_375-1575043694:389440..389778Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_375supercontigscaffold_375:389440..389778 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.09161	1.33062	0.926986	0.604607	0	0	0	0	0.22997	0	1.10595	0	0	0.188489	0	0	1.84381	4.8296	0	0.303571	0.263859	1.54441	0.938717	1.13791	0	0	0.374205	0	0.908705	0.617218
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063012 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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