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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062954 ID=TCONS_00062954|Name=TCONS_00062954|organism=Clytia hemisphaerica|type=transcript|length=829bp
AAGNCATTGTTTCATCAAAACACGCCATGCGATGGAGGAGACAAAGAGAA
TGCTACAAGAGTAAAATATTTGCCAGATTACTCAGCACATTACAACATTT
tgaacatgaaaaatatcttaCAAACCACTTTACCGGATGGTTCGAAAATA
TTACTGGTTTGTGATCCAAAGAGAGATTTGAAAAAGGTATCAAATTGTCA
TTTTACCTCGGATAATGGACAACATTGGAAAGGGCTATCTCCATCAGTCA
GTCAAATCAAATTCTACATGCCAACTGAAGATCTATTTTACGGTTATTGC
AACGAAGCCAAATACCGTTGTTCTTGGAATTTACTATTAAATAGAGTCTC
GTATTTGGACGAGGCAGCATACAATGAGAAACTATCAGACTTAAATATGG
TGTCTGCAACGAATTTGGACGATATGTCATTAATGATCGGTACATCCGCT
TCAAGCGAAGATGACACGATAGGATtATCCGCGCATGGAATCTCCACACT
TGAATCTGGGAACGTTTGGGCAAAAGTCTATATTTGGACGAACTGACGAG
GCTCTTCATCAGATAGTATCAATATACTGGAACAACCAAATATAATTTGG
TCATGTCGGTTATGAAAACTGTTTTGTCGGAATTTCAAAACTTACTTAGA
AATATTAAGTTTCATTCGCTTGATTCCTAGAGTGGATCTCTTTGCTCAAG
GAACTTTACGAATgaggaaaatgagaaaaatcactttagagttttcttca
tttattaTCAATGATTTATATGACATAAAAATCGTGTTTTATGAAAATAT
GATTCCTCAGGATGCAACATTATAAcgga Run BLAST on NCBI protein sequence of TCONS_00062954-protein >TCONS_00062954-protein ID=TCONS_00062954-protein|Name=TCONS_00062954-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
KXLFHQNTPCDGGDKENATRVKYLPDYSAHYNILNMKNILQTTLPDGSKI
LLVCDPKRDLKKVSNCHFTSDNGQHWKGLSPSVSQIKFYMPTEDLFYGYC
NEAKYRCSWNLLLNRVSYLDEAAYNEKLSDLNMVSATNLDDMSLMIGTSA
SSEDDTIGLSAHGISTLESGNVWAKVYIWTN Run BLAST on NCBI transcript from alignment at scaffold_375:129495..135087+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062954 ID=TCONS_00062954|Name=TCONS_00062954|organism=Clytia hemisphaerica|type=transcript|length=5593bp|location=Sequence derived from alignment at scaffold_375:129495..135087+ (Clytia hemisphaerica)
AAGNCATTGTTTCATCAAAACACGCCATGCGATGGAGGAGACAAAGAGAA
TGCTACAAGAGTAAAATATTTGCCAGGTTGGGAAGTTTTtgctttcttat
ttttttggtcaattctaaaaattcatgatatgcaccactgcaatgtcttc
taacattacgtcacagaaccaatagctcattggttggaagtgacgtaaaa
ttagtcaatacgtcactttcaaccaatcagctattgggtggaacggaaga
cattgcaatggtgcatatcatgaatatctgAGCGTCAAACATAATGTAAA
TTGTACCTACTGTACCATCGAATATCCTCTCCAAACACGTGTAAATCGTA
TCGAGGTTTTATAACTCTGTTATCACTAAAAAACATTCCTTCATTTATAG
ATTACTCAGCACATTACAACATTTtgaacatgaaaaatatcttaCAAACC
ACTTTACCGGATGGTTCGAAAATATTACTGGTTTGTGATCCAAAGAGAGA
TTTgtaatttgaattttctttctcaGTTATTATACTTTATATCTATGCCT
TGAAGAGATACTACCATAGAAGGtagaagttttttcaaaagtaaaacccT
TGTTTTATACAAGAAGTAAAATCCTAATAACAGCAGATCAAGCAAAGATC
AGTTTCAAATTATTAAAATGGGAATCAGACCTAAAATACCTTAGTTTCGC
CCTACAAATAAAATAGTATTAGAACAAAATTCTAGTCTCAAAGTGCCAGC
AAGTAAGAACAGCCCCATAAAATTTTTTCTGGTTCTTATGTATAATAAAG
AGAGGGTCAGAATAAGAATGAGAATGCCCTGGGTGTTAAGTGAAACTCAT
ACATAAGGATCAGCCAGCGGGCCAATATGAAACGACAATGTTCCccgggc
cggggggggggggggcactcaaggtaaatctTCTACCATaagtgcggccc
ttaagggtatattttccaaagcttcccaaagtgcactgtaagggtcgaaa
tcagcaaagatgagaagTATTGctctctaagggtgtaaaatttcgaaaat
cggaccatattttgcctgaaaatggtcaaaaatcttCAAGAAAATACACC
TTGAGGGTCGAATTTTCGCTCAAATTTgcgcaaatttcaaaattttctct
gcactgtaagggtccgatttcaaaggcctaattttggccGCATGTATGGT
CGTTTTTGATTGAGTGTCCAATCCCCTCCCCCAGGGCCCCAAAGATTCTT
AGGATTTTAAACAGAAAACAATTCTGATCTAATCTCCTGTCTACTTACAC
TTTTAATCACCATTCAGGAAAAAGGTATCAAATTGTCATTTTACCTCGGA
TAATGGACAACATTGGAAAGGTATATCAATTTTGTTGTATTTGAAAAGCT
TTCTTCTCGTACCATGCTTGATATCCAGAGTGGACAAAAAGGATATGGCC
AGACAAAGATTATGCTAATTACAGAGCAATTTGTGCCACAGAAGTTCTAT
TTCTCTTTTGTTAGTTGCGCTGGAAACATCGTCATAtgaaggatttatta
tacactggatatacaagtacctgatttttgctaatttctcatgttctagc
tatgtccgcagtaatgatattattgttcactctccttccctcattaaatg
atttttcgataCATTTTAATTGCGTTTTATATCAAAAGTCACTCATctaa
ttcccaaaagagacttaaaactttcccgtgagagtcagattcttctattt
aattgccaattataagttgttatgacgtttcaagttgtgAGAAAGGTCAA
AAAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNattgttttcctattgaaa
tgagcactcctttaaatagctctgtgtgcagtgcgtgttatgcttttagc
tagattttgacacactttttgacatccactgaattgattgaaaatttgaa
gtgttatttactgcaaattttggaatttttttcaaaagatNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNttctaacccaaattttggaaaaatatacatcacgtgatc
gattctgtccaatagaaggttgcaaatgaagcaagtttttatttaattgc
actttttacggtgcaaaatgtcattaatatttttacaaccataacacgga
tgttttttgagaatcaaggcaagttgtctatctattatttttacatcgtt
ggtcaAATAGATGtattgtgtataagaaattgaatgttgacaccggaaat
tttcaaactttaaccacaaaaaaaccaccttgccaccacgtgcctccaaa
agattttcataccacagtgacaCCAAGAAGCTCAAGTCTAATGTTTGCTA
CTTTTAGCTCTTGTGGTAacagttttggaaagatattcccaattgaaTAT
CTCGTgttactataagcattttgtttgatttttcttgtctaatgatgttt
ttctcacattagatttcacaaatgtatccggcttggtattctagccttac
tttcaaagttttttccctTCAAAGATACGAAAAGAAAacgctagagaact
ttttttaaatgagatacATTTCAGCCGTCATGACAGTTTTCctttgcgga
catagctagaacatcaattgttttctgaaacaaagaaaatacaatggtcg
ctctccaccgttttatgagtCATTTATCTAGTGTCTCTTATAATTCCTTG
GTCATATAAGCACTCTCACTAGATACTCTTCTCATGTCAGACACACAATG
CATTCCACAAAAatgtactctgtaccagagtgtatctcacgttttcACAA
AGTACAATAGCAGCACTTCTCCAGTTGCTGCgttgaagtttttataagat
gttcacataattggttattcaaaacaaaagagatcacgcgttctttagaa
aaatataataaaagtttttgtttgaatagttaacgaccgatccaatgaca
aaaattcttgtaaaatgttcATCTTGACCCCAccttctctcatcgtctcc
cctctctcaccaacactctaTCGCAGCGGCCagatctcaaatgagaaaag
acaatgacaacagaccctctacggcaatgaattttaaaattagcCGTAGA
CACAGACAAACAAAAATGAGGCTGTCATCAGTCTTTCAATGTTTGAGACA
TTTCATTTATTGTCTATAAAAATCTTCAGATACTTAATAAGAGACAACGT
CATTCCCTAACCTTCAAAACGAACGATTTGTAATTTATTAACATTTGGCT
GAGGAATGTATTTTCGGAAACCCCTTAATACCgaaattttattacatgtt
gTTCATTTCTTATCCTTCTCAGGGCTATCTCCATCAGTCAGTCAAATCAA
ATTCTACATGCCAACTGAAGATCTATTTTACGGTTATTGCAACGAAGCCA
AATACCGTTGTTCTTGGAATTTACTATTAAATAGAGTCTCGTATTTGGAC
GAGGCAGCATACAATGAGAAACTATCAGACTTAAATATGGTGTCTGCAAC
GAATTTGGACGATATGTCATTAATGATCGGTACATCCGCTTCAAGCGAAG
ATGACACGATAGGATGTAAGAAGGTTTTTTTAAACGAACAAAAATGAGTC
CGAAATTCCTCATTCGTCATCCTCATTCCTTGAAAAAGTACTTCCTTTAA
CGAGATAACTTTTCGCGGGCTTAAACTTTGCGGATTTcgtggatttgggt
gtcataCGCAAAATTAAGCCCCATCGGGAATTTGGAAAGGGCCTCTCCgt
aaaattaaatccccgctaaaaaagggtttttttttgcaattctattttta
tcctttttttaatttttgtttaccTGAAGGCACGCAACACtcgaaataaa
ttatttttataatttgactgGGGAAAAAGTTTTGTTAGTTTCTCATCCCA
TTCCATTTAAAGGTTTCGGCTCTTAACAAAAATCTTAATTTCTacccatc
cgcgaaattaaattcccacgaGATCTTAAAAATtccgcggatgagctcaa
ccgcgaaaatttatctATTTCTTTGAGTATCAAGGAACCAAGATGtcttt
ttttggacttgtttttgttttatttatctaAAATCGTCGGCTTTTAGagg
ttttcttctttttgcaaCCCTGTCTTTTCTATCTTCATCATAATCCGTAG
GGATTTTAAAGACTTAATGTCAACCAATAATATCCTACTGGGTCTTCGAC
ACAGGCTTAAATGACACGACTCCTTATTTTTCTTAACAACCTTTTCAATA
TCAATGTTTTATTTACTAAAGTTAGTCTTGCTCTTCTTGAAAAATACCAT
CCGTATTTGTGAACCTATTGGAATTCAAGTGCGGTGAAGTGGTTCATCAT
TACCCTTTAAATAGAGCTGAAAGCGAGTTTGTTCTATTGCGAACAAAACG
CAGGCCTAACCCGCAAAATCGTGGGCGGTAAAAGTGCTAATTTGCtatcg
tcctcagtcagtcaggatctagacaaatgaAGGACTTAGCAGtaaatgcc
tcacaataggtttgCTGATATTTACGTTCATAGTCCAATATTATAAGACT
CTTAAACTGGGTCCCGTTGGTGGGCTAAGGGGAAATTCAAAACTGGAATC
CCTGGTGCATTGCCTTAGACCAGTAAACTctttacccagctggcacacaa
cgttgtttcaacatttatctaatgttcacaacgtccatataatgttagat
gaacgttgaaataacgttgtgtgccagatgGNatgttcacaacgtccata
taatgttagatgaacgttgaaataacgatGTGTGCCAGATGGGTGAACAT
TACTTCACTGActacatttctttttttaatgtttttcagtATCCGCGCAT
GGAATCTCCACACTTGAATCTGGGAACGTTTGGGCAAAAGTCTATATTTG
GACGAACTGACGAGGCTCTTCATCAGATAGTATCAATATACTGGAACAAC
CAAATATAATTTGGTCATGTCGGTTATGAAAACTGTTTTGTCGGAATTTC
AAAACTTACTTAGAAATATTAAGTTTCATTCGCTTGATTCCTAGAGTGGA
TCTCTTTGCTCAAGGAACTTTACGAATgaggaaaatgagaaaaatcactt
tagagttttcttcatttattaTCAATGATTTATATGACATAAAAATCGTG
TTTTATGAAAATATGATTCCTCAGGATGCAACATTATAAcgga Coding sequence (CDS) from alignment at scaffold_375:129495..135087+ >TCONS_00062954 ID=TCONS_00062954|Name=TCONS_00062954|organism=Clytia hemisphaerica|type=CDS|length=2730bp|location=Sequence derived from alignment at scaffold_375:129495..135087+ (Clytia hemisphaerica)
AAGNCATTGTTTCATCAAAACACGCCATGCGATGGAGGAGACAAAGAGAA
TGCTACAAGAGTAAAATATTTGCCAGATTACTCAGCACATTACAACATTT
tgaacatgaaaaatatcttaCAAACCACTTTACCGGATGGTTCGAAAATA
TTACTGGTTTGTGATCCAAAGAGAGATTTGAAAAAGGTATCAAATTGTCA
TTTTACCTCGGATAATGGACAACATTGGAAAGGGCTATCTCCATCAGTCA
GTCAAATCAAATTCTACATGCCAACTGAAGATCTATTTTACGGTTATTGC
AACGAAGCCAAATACCGTTGTTCTTGGAATTTACTATTAAATAGAGTCTC
GTATTTGGACGAGGCAGCATACAATGAGAAACTATCAGACTTAAATATGG
TGTCTGCAACGAATTTGGACGATATGTCATTAATGATCGGTACATCCGCT
TCAAGCGAAGATGACACGATAGGATtATCCGCGCATGGAATCTCCACACT
TGAATCTGGGAACGTTTGGGCAAAAGTCTATATTTGGACGAACTGAAAGN
CATTGTTTCATCAAAACACGCCATGCGATGGAGGAGACAAAGAGAATGCT
ACAAGAGTAAAATATTTGCCAGATTACTCAGCACATTACAACATTTtgaa
catgaaaaatatcttaCAAACCACTTTACCGGATGGTTCGAAAATATTAC
TGGTTTGTGATCCAAAGAGAGATTTGAAAAAGGTATCAAATTGTCATTTT
ACCTCGGATAATGGACAACATTGGAAAGGGCTATCTCCATCAGTCAGTCA
AATCAAATTCTACATGCCAACTGAAGATCTATTTTACGGTTATTGCAACG
AAGCCAAATACCGTTGTTCTTGGAATTTACTATTAAATAGAGTCTCGTAT
TTGGACGAGGCAGCATACAATGAGAAACTATCAGACTTAAATATGGTGTC
TGCAACGAATTTGGACGATATGTCATTAATGATCGGTACATCCGCTTCAA
GCGAAGATGACACGATAGGATtATCCGCGCATGGAATCTCCACACTTGAA
TCTGGGAACGTTTGGGCAAAAGTCTATATTTGGACGAACTGAAAGNCATT
GTTTCATCAAAACACGCCATGCGATGGAGGAGACAAAGAGAATGCTACAA
GAGTAAAATATTTGCCAGATTACTCAGCACATTACAACATTTtgaacatg
aaaaatatcttaCAAACCACTTTACCGGATGGTTCGAAAATATTACTGGT
TTGTGATCCAAAGAGAGATTTGAAAAAGGTATCAAATTGTCATTTTACCT
CGGATAATGGACAACATTGGAAAGGGCTATCTCCATCAGTCAGTCAAATC
AAATTCTACATGCCAACTGAAGATCTATTTTACGGTTATTGCAACGAAGC
CAAATACCGTTGTTCTTGGAATTTACTATTAAATAGAGTCTCGTATTTGG
ACGAGGCAGCATACAATGAGAAACTATCAGACTTAAATATGGTGTCTGCA
ACGAATTTGGACGATATGTCATTAATGATCGGTACATCCGCTTCAAGCGA
AGATGACACGATAGGATtATCCGCGCATGGAATCTCCACACTTGAATCTG
GGAACGTTTGGGCAAAAGTCTATATTTGGACGAACTGAAAGNCATTGTTT
CATCAAAACACGCCATGCGATGGAGGAGACAAAGAGAATGCTACAAGAGT
AAAATATTTGCCAGATTACTCAGCACATTACAACATTTtgaacatgaaaa
atatcttaCAAACCACTTTACCGGATGGTTCGAAAATATTACTGGTTTGT
GATCCAAAGAGAGATTTGAAAAAGGTATCAAATTGTCATTTTACCTCGGA
TAATGGACAACATTGGAAAGGGCTATCTCCATCAGTCAGTCAAATCAAAT
TCTACATGCCAACTGAAGATCTATTTTACGGTTATTGCAACGAAGCCAAA
TACCGTTGTTCTTGGAATTTACTATTAAATAGAGTCTCGTATTTGGACGA
GGCAGCATACAATGAGAAACTATCAGACTTAAATATGGTGTCTGCAACGA
ATTTGGACGATATGTCATTAATGATCGGTACATCCGCTTCAAGCGAAGAT
GACACGATAGGATtATCCGCGCATGGAATCTCCACACTTGAATCTGGGAA
CGTTTGGGCAAAAGTCTATATTTGGACGAACTGAAAGNCATTGTTTCATC
AAAACACGCCATGCGATGGAGGAGACAAAGAGAATGCTACAAGAGTAAAA
TATTTGCCAGATTACTCAGCACATTACAACATTTtgaacatgaaaaatat
cttaCAAACCACTTTACCGGATGGTTCGAAAATATTACTGGTTTGTGATC
CAAAGAGAGATTTGAAAAAGGTATCAAATTGTCATTTTACCTCGGATAAT
GGACAACATTGGAAAGGGCTATCTCCATCAGTCAGTCAAATCAAATTCTA
CATGCCAACTGAAGATCTATTTTACGGTTATTGCAACGAAGCCAAATACC
GTTGTTCTTGGAATTTACTATTAAATAGAGTCTCGTATTTGGACGAGGCA
GCATACAATGAGAAACTATCAGACTTAAATATGGTGTCTGCAACGAATTT
GGACGATATGTCATTAATGATCGGTACATCCGCTTCAAGCGAAGATGACA
CGATAGGATtATCCGCGCATGGAATCTCCACACTTGAATCTGGGAACGTT
TGGGCAAAAGTCTATATTTGGACGAACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062954-exon-scaffold_375-1491911889:129495..129570 | TCONS_00062954-exon-scaffold_375-1491911889:129495..129570 | Clytia hemisphaerica | exon |
| TCONS_00062954-exon-scaffold_375-1510915933:129495..129570 | TCONS_00062954-exon-scaffold_375-1510915933:129495..129570 | Clytia hemisphaerica | exon |
| TCONS_00062954-exon-scaffold_375-1575043694:129495..129570 | TCONS_00062954-exon-scaffold_375-1575043694:129495..129570 | Clytia hemisphaerica | exon |
| TCONS_00062954-exon-scaffold_375-1491911889:129895..129997 | TCONS_00062954-exon-scaffold_375-1491911889:129895..129997 | Clytia hemisphaerica | exon |
| TCONS_00062954-exon-scaffold_375-1510915933:129895..129997 | TCONS_00062954-exon-scaffold_375-1510915933:129895..129997 | Clytia hemisphaerica | exon |
| TCONS_00062954-exon-scaffold_375-1575043694:129895..129997 | TCONS_00062954-exon-scaffold_375-1575043694:129895..129997 | Clytia hemisphaerica | exon |
| TCONS_00062954-exon-scaffold_375-1491911889:130812..130864 | TCONS_00062954-exon-scaffold_375-1491911889:130812..130864 | Clytia hemisphaerica | exon |
| TCONS_00062954-exon-scaffold_375-1510915933:130812..130864 | TCONS_00062954-exon-scaffold_375-1510915933:130812..130864 | Clytia hemisphaerica | exon |
| TCONS_00062954-exon-scaffold_375-1575043694:130812..130864 | TCONS_00062954-exon-scaffold_375-1575043694:130812..130864 | Clytia hemisphaerica | exon |
| TCONS_00062954-exon-scaffold_375-1491911889:133217..133459 | TCONS_00062954-exon-scaffold_375-1491911889:133217..133459 | Clytia hemisphaerica | exon |
| TCONS_00062954-exon-scaffold_375-1510915933:133217..133459 | TCONS_00062954-exon-scaffold_375-1510915933:133217..133459 | Clytia hemisphaerica | exon |
| TCONS_00062954-exon-scaffold_375-1575043694:133217..133459 | TCONS_00062954-exon-scaffold_375-1575043694:133217..133459 | Clytia hemisphaerica | exon |
| TCONS_00062954-exon-scaffold_375-1491911889:134734..135087 | TCONS_00062954-exon-scaffold_375-1491911889:134734..135087 | Clytia hemisphaerica | exon |
| TCONS_00062954-exon-scaffold_375-1510915933:134734..135087 | TCONS_00062954-exon-scaffold_375-1510915933:134734..135087 | Clytia hemisphaerica | exon |
| TCONS_00062954-exon-scaffold_375-1575043694:134734..135087 | TCONS_00062954-exon-scaffold_375-1575043694:134734..135087 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_375 | supercontig | scaffold_375:129495..135087 + |
Blast
The following BLAST results are available for this feature:
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