TCONS_00067258 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067258
Unique NameTCONS_00067258
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length286

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067258 ID=TCONS_00067258|Name=TCONS_00067258|organism=Clytia hemisphaerica|type=transcript|length=286bp
taaaaataaggaactccaggctcagagcaaagttaaggttccttataaaa
aaaaaacgtgtagtaataaaatgaaagatagtatATCTCCATTCAAACGA
ATCCACTTTATGCGCTTAAAATTGTATTGAAATTGTCCTTGCTTTATCAC
TCTTTAACACTGGTCGAACTCTAGTTTGTTGGCCCCACACTGGATGGTAG
ATAAGTATCTCGAACAACTACAGTCATCAATAAAAAATGTTAATCTTTTA
CTAGCAATTACAAGTAAGTCAAAAACAATGTCAAGC
Run BLAST on NCBI

transcript from alignment at scaffold_466:241228..241513

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067258 ID=TCONS_00067258|Name=TCONS_00067258|organism=Clytia hemisphaerica|type=transcript|length=286bp|location=Sequence derived from alignment at scaffold_466:241228..241513 (Clytia hemisphaerica)
GCTTGACATTGTTTTTGACTTACTTGTAATTGCTAGTAAAAGATTAACAT
TTTTTATTGATGACTGTAGTTGTTCGAGATACTTATCTACCATCCAGTGT
GGGGCCAACAAACTAGAGTTCGACCAGTGTTAAAGAGTGATAAAGCAAGG
ACAATTTCAATACAATTTTAAGCGCATAAAGTGGATTCGTTTGAATGGAG
ATatactatctttcattttattactacacgttttttttttataaggaacc
ttaactttgctctgagcctggagttccttattttta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042017XLOC_042017Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067258-exon-scaffold_466-1491911889:241228..241513TCONS_00067258-exon-scaffold_466-1491911889:241228..241513Clytia hemisphaericaexon
TCONS_00067258-exon-scaffold_466-1510915933:241228..241513TCONS_00067258-exon-scaffold_466-1510915933:241228..241513Clytia hemisphaericaexon
TCONS_00067258-exon-scaffold_466-1575043694:241228..241513TCONS_00067258-exon-scaffold_466-1575043694:241228..241513Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_466supercontigscaffold_466:241228..241513 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.94403	1.72337	2.41617	1.23716	0.49369	0.593284	0.551231	0.80652	1.99957	0.488739	0.641742	3.7795	1.62253	1.62894	1.1401	0.698098	0.361431	0.525818	3.1501	1.96601	2.1719	0	0.524794	0	0.45497	0	3.27143	2.37026	1.19284
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067258 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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