TCONS_00062888 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00062888
Unique Name	TCONS_00062888
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	4635

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_373:64516..77146-

transcript sequence

>TCONS_00062888 ID=TCONS_00062888|Name=TCONS_00062888|organism=Clytia hemisphaerica|type=transcript|length=4635bp
actttcaagactgtataattttagaaaaaatatacactgaatTTATCGTC
AGGATTTTGAGATTTCATTTCTGTtggacatgatgtccgattgactaaaa
atatttatttgcaacCCTGCTGATTGACTATTAACAAGCAACATAATCAC
ACAAAATCAACTGTCAATCATATACTCAAACAATTCATAAAAATTAGAAC
CCAGGtgcttttgctttctttttcaagaaaaatacaacacggttttgaat
gttttagcTGAACAACCAGACCAGATTATTACATTCGCTatatcccttta
gagcagagcaTGGTTTTTGCATAATGGATGGTCTGTTATGAGATTACATC
TACCAAGCCATGTTCAAAATCATCGTTTGTTGGTGTTTAGgtacaaagaa
aataaatcgaTAAGATGTCAAGAAAGTGTTGTCCCTGCTGTTCAGTCCTT
ATTGCATCAATTTGCCTGGCAGTTGTTGGAATCTTGATAGCGTGTCTGAA
TTTTGGTGCTATGCCATTATATAAAGGTATTGTAAAGAAGAAATTGGTGA
TGAAAAAAGGTTCAATGACCTACAAAAATTGGGAACATGCACCACTACCA
GTGTACATGAATTATTACATCTTTAATTACACAAATTTGGAGGAGATTAA
GAATGGAAGCAAACCAATTATTAAAGAGCTGGGACCTTATGCATACAGGT
GGGAATCTATTTTATGCACAAGTNATGATCTTCAAAGAATTGTTAAATGG
AGAGGTTCTGaTGAAGTGCCTCATTGGTTGACAAAATATGGTCGAATGAT
CAATGGTACAGATGGAACACACTTCAAACCTTTTGTTACCAAGTCAGATC
AACTTTATGCATTCATCCCTGATATATGCAGGTCTATTTACATCGTGTAC
GACCAAGAAGATTCAGTACAAAATATCGATCTCTACCGATATACAACAGA
TGAATATTCCATGTTGAACCATACTGCTAACCCTGACAATGAAGCATTTT
GTGTTGGTGGTTGTGGACCATCAGGAATCATTCCAATCGGACAGTGCCAA
GACGGAGACCCACCAGTTTATGCATCTGGTGTTCACTTTTATCAATCTGA
TCCCGCCTTGTTTGAAGCTGTTGATGGCTTGAGCAATCCTGACAAAGAAA
AACACGCCACTTTGATCAGCGTTGAACCTGATACTGGTACCACAATGAAA
GCAAACAAGCGATTGCAAATCAATGTCAAAGCTGAATACGTTGAATTCTT
CCCaaaaacttatggGTTCCCAAAAGGTGATGGTATCTACTTTCCAGTGT
TTTATGTTGATGAAGAGTTCAAATTAGATGAGGCGAATGCGAAGACGTTT
GAAGATGAAGTGACAAACCCTAAGAAGTACATTGTGGTTTTCCGATGGGT
GTTGGTTGGTCTTGGTGGATTCCTCATCTTGCTCGGTGTTACAATGTATG
TGTGTCATGCCGTTCGCAATAACGACGCCGAAGACGGATATAAGAAGTTT
TCTGGTCGTTGAGGATGCATTGTTCAAATGgatgatttttcttcttcaaa
caGCTCTGAATTCGAGCAATTTGGCCAATCTTTCGGTGGAGATCAATTAC
TCCACAATGAATTATAGTTAGGGCAGATTAGGGGTATGATTGTATTACAA
ATCTCATGTTTATCTTaagaattttagaaaaatgtagGAGTTATTGTATG
ATTATTGTTGATATTTGATAGAGTatttttcttatatattttgtattttc
gagttGATGGAAGTTGTGCTCGATGGCATAAACTTTGGATGCTCTTTATT
GTTACTGGTTAACTTTTCAAGAGCTGGCAAAGGGAAAGGCTTGCCTTTTC
ATAAATATGAGAGATCCCTACTGCATAATgcattaaaacattttttgaca
cTCTTCTGTGTTGAAATTACACGCAAGTGTTTGTTTTACATTTCCCTACA
TGGACGATTTTCTTAAGGCGTTTCaaattacattttttataagcatttgt
taagaatatttatggATAATTCTTGTTTGATTTGATTGTATTGAAAATCA
ATTAGACATTGGCCCTCAGTAACCTTGTAATCTGCCCTTTATATATGGCA
TTGATTAAGCTTTACTAAATTTTGGTCGAGGTACATGACCTCTCCCAGTT
GAACTTTATCCTTACATTCTCTTAAACTTAGTACCACTTAAGCAAGTCTT
ACATACATCATATCAATTTCACGATTCTGTCTAAGAAACAATTACAATCA
TTAGTCCAATTTTCTaggatttcgaaattcaatgtgTTGATTTCATAgga
ttctttgttaaaaatttttatacCAAAGTCTTGATATTCAAGAAAGAGAT
TTGTATGGATTTTCtagataatttttaaaaacatttatttttcaggattc
tttttaaaattgaattaatATAATAGAAGCTAAGGTATAGATTACTCTTT
ATTACATAGAGTCGTCTTGTGATGGATTAAAGTTGCTTATAGTTTTTCGA
AAGAGATCGGTTCAGATATTTGGAACTTCTGTATAGttgattttagtttt
tatcGCAATCTTTGTTCAATATCATTAATAAATACAGTGTTTATATTTct
agaataaaaaaagaaaaaaaccaaacaaaaaaaaaacaaatacgTTATGG
GTGAAGAAAAAGGTGGTCGTTGCTGTCGATGCTGCACGACTGTTGTCACA
ATTTCCATTCTCATTGTTGTCAGTGTTCTTTTCATCTGTTTGGGAGCTGG
ATCCATCCCTTTTCTCACCAACTTTTATAAAGATACAGTACTAAAGCAAT
TGGTGATGAAATATTCGGATTCTTCTGGAGGGAACGAAGCTTACAAGAAT
TGGAATTCTCCTCCAGCACCTGTCTACATGCAGTTTTATATGTTTAATTA
CACGAATGTTGACGAAATCATCAATGAAAAAGCTAAACCCAATGTCACTC
AACTCGGCCCATACTCCTACAGAGAGGTCCGAGAGAATGTGATTCTTCAc
caaaacgaaaatgaaatcacatacttacAAAATTATTCATACGTTTTCGA
CCCTGCTACTTCATGTGCTAACTGCTCAGAAAATGATACGATCATCACTC
CGAACCTTGCTGTCATCacatttcaaacaaaattgaaggATTTGAACATC
ACACCACAATCAGGATTTGTCAAGAGATGGGCCATTGAAGCTTTAGATAA
ACTGTTGAATAATGACAAAACGTACAAAATGTTCATACCTTTGCCAGTGC
ATGAACTGTTATGGGGATACACCAGTCCGTTCCTCGATCATCTGGAAGGT
CTCATACCAAAAGTCATACGGAACCTCATTCCGAACCTACCCCCGCCTTT
TATAGCTTTACAGCAAAACGGTACAGCAGGTGCAGTGGCGGTTGGAAATA
TCACCATTCTTACGGGCAATGAAGATATCAATAAAGTTCAAATAACAACT
AAATGGAGGGGGAAAAATTCCACAGGTTCTTGGAATGGAGACAAGTTTAC
AAATTTTTGGCAAACACCTTATGGCAATATGATCAATGGAACAGATGGAT
CCCACTTTCAACCTTACATCTCgaaagatgacgtcatttacaTTTTCAAT
CCTCAGTTATGCAgGTCGTTGTATTTGAATTATCAGAGAGATACAAGCAT
TATGGACATCAAATTATTACGCTACACAACGAGGGCGAAAATCTTCCAAA
ATTACACTGCCAACCCAGACAACAAAGCTTTCTGTGGTCCGAAACGTTGT
TATCCAAGTGGCCTGTTACCAGTGGGACAGTGCCAGCCTGGCAATCCTCC
AGTCTTTATGTCATCGCCACATTTCTACCAAGGATACCCAGCATTGTGGC
AATCTTTCAACGGGCTACATCCTGAGACAGATTTGCACGAAACGTATTTA
AGTATTGAACCGACAACTGGGATCGTCATGGATGCACACAAACGTCTTCA
AATCAACGTCAATATTCAAAAAGTCCCTTATATTTCGAGAACAGATGTAT
TTCCAGAGCAAGATAATTTCTATCCTGTTTTGTTTGTGCATGAGTATGCC
ACCATTGACAAAGCATCAGCAGATAGGTTCAAGAAAGAAGTAATGTTACC
AAAGCAGATGATCACTATAATGGAATATGGTTTGATCGGCCTGGGTGGCC
TCTTTCTCATCATTGCTCTTGTATTGGGTGCAAgacatcaaagaaaaaag
aatcaacAATCCGTCTATACAGAATTTTCGAATGAGGACAATGAAAAGAA
CATACAACAGaaaaaaggacaTTGACGAACAACCAAATGAGACTGCTAGG
CTGATAATGACTTAATTAAAATACTAATGACTACTAAGTTTTAAATGACA
GGGACAGATAGTTTTTTCTAACCTAGCGGTTTTTCTACGTCGTAACATTT
TAGtcatctttgaaaaaaagttctttttttgctcttttttaatGGTAATG
TGAGTTATTACCGGCATATTTAAGAAagtaaaatttctcaaaaaagtaaT
TGTTTTAACtgacatttaattattttacaATTGATTTAACACACGAAAAT
TTTATTTAGAAGTATTTTGTATCTTGTAAATAGCATTTTGAAGTATAATT
TAGACAATGATTTCTGGAAATATATTTCTTTTCAT

Run BLAST on NCBI

transcript from alignment at scaffold_373:64516..77146-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00062888 ID=TCONS_00062888|Name=TCONS_00062888|organism=Clytia hemisphaerica|type=transcript|length=12631bp|location=Sequence derived from alignment at scaffold_373:64516..77146- (Clytia hemisphaerica)
ACTTTCAAGACTGTATAATTTTAGAAAAAATATACACTGAATTTATCGTC
AGGATTTTGAGATTTCATTTCTGTTGGACATGATGTCCGATTGACTAAAA
ATATTTATTTGCAACCCTGCTGATTGACTATTAACAAGCAACATAATCAC
ACAAAATCAACTGTCAATCATATACTCAAACAATTCATAAAAATTAGAAC
CCAGGTGCTTTTGCTTTCTTTTTCAAGAAAAATACAACACGGTTTTGAAT
GTTTTAGCTGAACAACCAGACCAGATTATTACATTCGCTATATCCCTTTA
GAGCAGAGCATGGTTTTTGCATAATGGATGGTCTGTTATGAGATTACATC
TACCAAGCCATGTTCAAAATCATCGTTTGTTGGTGTTTAGGTACAAAGAA
AATAAATCGATAAGATGTCAAGAAAGTGTTGTCCCTGCTGTTCAGTCCTT
ATTGCATCAATTTGCCTGGCAGTTGTTGGAATCTTGATAGCGTGTCTGAA
TTTTGGTGCTATGCCATTATATAAAGGTATTGTAAAGAAGGTATGATTAT
TTTTATTTATATTTTGTATCCAAACTTTTTCCTGATTATGAATTGATGGT
AGTTGTCTTTAAATCAACCTTGATTTTTCTTGGAAACTTATTAATTTCAA
CTTCTAATTGAATTTCTATTNATTATTTTTATTTATATTTTGTATCCAAA
CTTCTTCCTGATTATGAATTGATGGTAGTTGTCTTTTAATCAACCTTGAT
TTTTCTTGGAAACTTATTAATTTCAACCTCTAATTGAATTTCTATCACAG
AAATTGGTGATGAAAAAAGGTTCAATGACCTACAAAAATTGGGAACATGC
ACCACTACCAGTGTACATGAATTATTACATCTTTAATTACACAAATTTGG
AGGAGATTAAGAATGGAAGCAAACCAATTATTAAAGAGCTGGGACCTTAT
GCATACAGGTGGGAATCTATTTTATGCACAAGTNATGATCTTCAAAGAAT
TGTTAAATGGAGAGGTTCTGAGTAAGTTTTCAATTTTTTATTTCTCATGC
CCTTATCTTATTTCCCATCATCCTTTTCTTCATCCCTTTTGTATCCTACA
AATTTTTAAATTGTTTAAAAACTTTCAAGATTCTTTTTTTTTTGAAATAC
TCTTAAAACTGATAGCGCAATCAAAATATAACAATTAAAACGAATTTGGA
AATGATTCAAAAGTAAAAATATGAAAATAATAAAACTGTTAGAAGTGCTG
TTCGCACGTATGTCAAAAGCAGAAAGAAGAGAACTTTGACTGATTACAGG
GAAGTGAAATATTATGATCTACGTAACCAAATGACTTTAAACATCATATG
TAGATCTGTTGTTTTCACGCTAAATGAATTGAAATATGGTATCAAATAAT
TCCTTACCTGTATGGTTTGAGGGAATTAATCAATTTCAATAACCTTTAAA
AATTGGGGTTTGAATACTAATAGTGTAACAACAATAAACACACATACAAT
TTATGCAAATAATCATTATTGAAATATATGATGTCATTCTGTTACAGTGA
AGTGCCTCATTGGTTGACAAAATATGGTCGAATGATCAATGGTACAGGTA
ATGAAAATGATATTTGTTTTTAGAAAAACTGTTTCAATTTTGCTAAAAGG
CTCTTATTAAAATTGTCAGTGATATTACTAGGAAATGGTAAACTCCAGAA
ATTTAAACATTTCCTAAATCGCCCTCTAGGAATATTACCCCTTGGAGAAT
TAGTCTCTTTAGAAGGCGTTTTGATATTACTTTACTCATTTTTAATTTTT
TTTTACTATCTATCATTCTATTGTATTGTCAGATGGAACACACTTCAAAC
CTTTTGTTACCAAGTCAGATCAACTTTATGCATTCATCCCTGATATATGC
AGGTACAACCTTATTTTGACCACAATTCAGATGTGTAATTTGAATTGAAA
AACTAGGAATATTTTGAAGATGTAGTGCTTGGGACCATTATCAACTGTGT
CTAGGTATGAATGTGACAAGAACAAAAATGTTTCTCCTCTTCACTTTCAC
CATGCAAGTAAAAAGCTATTTATTTGGCATTTTTTTAGGTCTATTTACAT
CGTGTACGACCAAGAAGATTCAGTACAAAATATCGATCTCTACCGATATA
CAACAGATGAATATTCCATGTTGAACCATACTGCTAACCCTGACAATGAA
GCATTTTGTGTTGGTGGTTGTGGACCATCAGGAATCATTCCAATCGGACA
GTGCCAAGACGGAGGTATAATGAAAATTTGAACACTCTTCTATCATCTTT
GTTTGTGTCTATTATTATTATAGGGCAAACGAATTTTTTACCTTCAAAAC
GATGGAGATCCACTTTCCTCATTTACTTTTTTTATGTTTCCAGACCCACC
AGTTTATGCATCTGGTGTTCACTTTTATCAATCTGATCCCGCCTTGTTTG
AAGCTGTTGATGGCTTGAGCAATCCTGACAAAGAAAAACACGCCACTTTG
ATCAGCGTTGAACCTGTAAGACTTTTATTACAAGTTACGCAGATCTAGAA
AACTCCCTAAAACTTAGTAAGACTTTTTATTCTCACTCACAGGATTTTTC
TCTCTGCAAGACCTTTTTTGGCAAGGTGAATTGGTATAGAAATGCCAATT
TCAAATCGATTGTTTTTATAGTTGATGATAAACTCNTTTTTTGGCAAGGT
GAATTGGTATAGAAATGCCAATTTCAAATCGATTGGTTTTATAGTTGATG
ATAAACTCAATATTTATATCTAACCCATCAGGATACTGGTACCACAATGA
AAGCAAACAAGCGATTGCAAATCAATGTCAAAGCTGAATACGTTGAATTC
TTCCCGTGAGTTTGTTTTGATACCAACTTTCCTATCTTCATAGAAAAATC
CAAAACATCTATCACTGAACTCACATATTATTTTCTTTTGTTTTCAGAAA
AACTTATGGGTTCCCAAAAGGTGATGGTATCTACTTTCCAGTGTTTTATG
TTGATGAAGTAAGTCAATCTTGTAATTTAATGTTTAATTCAATTTTTTTG
GCCATGAGTTTAAACAACAAAGAAATAATTATTTTAACTATTTTCGCTTG
AAAACTTAGGAGTTCAAATTAGATGAGGCGAATGCGAAGACGTTTGAAGA
TGAAGTGACAAACCCTAAGAAGTACATTGTGGTTTTCCGATGGGTGTTGG
TTGGTCTTGGTGGATTCCTCATCTTGCTCGGTGTTACAATGTATGTGTGT
CATGCCGTTCGCAATAACGACGCCGAAGACGGATATAAGAAGGTCAGTGT
GTGATTCTCTCCATTACAGATTCGATTGAACTTTCTAATAAAGTCTCTTT
TTTATTAAGTTTTTCTAAAACAACTTCTGTTACTTAATTTGAAGTCACAA
ATATATTGGAAGATAGATTTCTTGGATATGTGCTCTTGATAAATTTCTTC
AATAATTTCGTTCCTTGTTTTAGTTTTCTGGTCGTTGAGGATGCATTGTT
CAAATGGATGATTTTTCTTCTTCAAACAGCTCTGAATTCGAGCAATTTGG
CCAATCTTTCGGTGGAGATCAATTACTCCACAATGAATTATAGTTAGGGC
AGATTAGGGGTATGATTGTATTACAAATCTCATGTTTATCTTAAGAATTT
TAGAAAAATGTAGGAGTTATTGTATGATTANTTATAGGGCAAACGAATTT
TTTACCTTCAAAACGATGGAGATCCACTTTCCTCATTTACTTTTTTTATG
TTTCCAGACCCACCAGTTTATGCATCTGGTGTTCACTTTTATCAATCTGA
TCCCGCCTTGTTTGAAGCTGTTGATGGCTTGAGCAATCCTGACAAAGAAA
AACACGCCACTTTGATCAGCGTTGAACCTGTAAGACTTTTATTAGAAGTT
ACGCAGATCTAGAAAACTCCCTAAAACTTAGTAAGACTTTTTATTCTCAC
TCACAGGATTTTTCTCTCTGCAAGACCTTTTTTGGCAAGGTGAATTGGTA
TAGAAATGCCAATTTCAAATCGATTGGTTTTATAGTTGATGATAAACTCA
ATATTTATATCTAACCCATCAGGATACTGGTACCACAATGAAAGCAAACA
AGCGATTGCAAATCAATGTCAAAGCTGAATACGTTGAATTCTTCCCGTGA
GTTTGCTTTGATACCAACTTTCCTATCTTCATAGAAAAATCCAAAACATC
TATCACTGAACTCACATATTATTTTCTTTTGTTTTCAGAAAAACTTATGG
GTTCCCAAAAGGTGATGGTATCTACTTTCCAGTGTTTTATGTTGATGAAG
TAAGTCAATCTTGTAATTTAATGTTTAATTCCATTTTTTTGGCCATGAGT
TTAAACAACAAAGAAATAATTATTTTAACTATTTTCGCTTGAAAATTTAG
GAGTTCAAATTAGATGAGGCGAATGCGAAGACGTTTGAAGATGAAGTGAC
AAACCCTAAGAAGTACATTGTGGTTTTCCGATGGGTGTTGGTTGGTCTTG
GTGGATTCCTCATCTTGCTCGGTGTTACAATGTATGTGTGTCATGCCGTT
CGCAATAACGACGCCGAAGACGGATATAAGAAGGTCAGTGTGTGATTCTC
TCCATTACAGATTCGATTGAACTTTCTAATAAAGTCTCTTTTTTATTAAG
TTTTTCTAAAACAACTTCTGTTACTTAATTTGAAGTCACAAATATATTGG
AAGATAGATTTCTTGGATATGTGCTCTTGATAAATTTCTTCAATAATTTC
GTTCCTTGTTTTAGTTTTCTGGTCGTTGAGGATGCATTGTTCAAATGGAT
GATTTTTCTTCTTCAAACAGCTCTGAATTCGAGCAATTTGGCCAATCTTT
CGGTGGAGATCAATTACTCCACAATGAATTATAGTTAGGGCAGATTAGGG
GTATGATTGTATTACAAATCTCATGTTTATCTTAAGAATTTTAGAAAAAT
GTAGGAGTTATTGTATGATTATTGTTGATATTTGATAGAGTATTTTTCTT
ATATATTTTGTATTTTCGAGTTGATGGAAGTTGTGCTCGATGGCATAAAC
TTTGGATGCTCTTTATTGTTACTGGTTAACTTTTCAAGAGCTGGCAAAGG
GAAAGGCTTGCCTTTTCATAAATATGAGAGATCCCTACTGCATAATGCAT
TAAAACATTTTTTGACACTCTTCTGTGTTGAAATTACACGCAAGTGTTTG
TTTTACATTTCCCTACATGGACGATTTTCTTAAGGCGTTTCAAATTACAT
TTTTTATAAGCATTTGTTAAGAATATTTATGGATAATTCTTGTTTGATTT
GATTGTATTGAAAATCAATTAGACATTGGCCCTCAGTAACCTTGTAATCT
GCCCTTTATATATGGCATTGATTAAGCTTTACTAAATTTTGGTCGAGGTA
CATGACCTCTCCCAGTTGAACTTTATCCTTACATTCTCTTAAACTTAGTA
CCACTTAAGCAAGTCTTACATACATCATATCAATTTCACGATTCTGTCTA
AGAAACAATTACAATCATTAGTCCAATTTTCTAGGATTTCGAAATTCAAT
GTGTTGATTTCATAGGATTCTTTGTTAAAAATTTTTATACCAAAGTCTTG
ATATTCAAGAAAGAGATTTGTATGGATTTTCTAGATAATTTTTAAAAACA
TTTATTTTTCAGGATTCTTTTTAAAATTGAATTAATATAATAGAAGCTAA
GGTATAGATTACTCTTTATTACATAGAGTCGTCTTGTGATGGATTAAAGT
TGCTTATAGTTTTTCGAAAGAGATCGGTTCAGATATTTGGAACTTCTGTA
TAGTTGATTTTAGTTTTTATCGCAATCTTTGTTCAATATCATTAATAAAT
ACAGTGTTTATATTTCTAGAATAAAAAAAGAAAAAAACCAAACAAAAAAA
AAACAAATACGTTATGGGTGAAGAAAAAGGTGGTCGTTGCTGTCGATGCT
GCACGACTGTTGTCACAATTTCCATTCTCATTGTTGTCAGTGTTCTTTTC
ATCTGTTTGGGAGCTGGATCCATCCCTTTTCTCACCAACTTTTATAAAGA
TACAGTACTAAAGGTATACAGTCTTCTCTTTGCATTTAATCAATCTGCAA
TCATCATTCTTGCCCAACCAATGCAAGATGTTCAGTACCTGTCAAATCCG
TACGTCACCAGCTGTTCGCAGTGTCCATTTAGTGTTTTTTGTTAAATCTG
GGACTTTATTTTGCTAAAAAAACAACATAACTCTACCAAATATTTAGCTT
ATCATGATTCGTGACCAGTGTTTCCACTATTTTTTCAGCAATTGGTGATG
AAATATTCGGATTCTTCTGGAGGGAACGAAGCTTACAAGAATTGGAATTC
TCCTCCAGCACCTGTCTACATGCAGTTTTATATGTTTAATTACACGAATG
TTGACGAAATCATCAATGAAAAAGCTAAACCCAATGTCACTCAACTCGGC
CCATACTCCTACAGGTAGTTTTGACACGTTTTTCGTTCGTTCGTTCGTTC
GTTCGTTCGTTCGTTCGTTCGTTCGTTACCAGCTTTTCTCGAGATTGGCT
CATTAGTTTTTTCTGATTTTTTTGCAGAAAGATGTGTATTAGCAATGTTC
AAAAGATGGCTGAGTCTGATCTTTGAGAAAAAAAATTTTCCGGCCGAAAA
TGCCAGAAGTATGCCGGAAATCGCCGTTTTTACAGATTCCTAACATTTCT
TTGTTTTTTAACACAAAAACATAATTGATAACAGTGCCCACCATCAAGCA
TGATTCATTTTCTGCATCCGGAACTTTCTATTTCTTTTTTCCCTTCTCCC
CTTCTCCCCTTCCCTCTCCCCCCATCAACAATCAATGATAACATTTAAGG
CGTTATGCATTTTCACTAAACACTATATTTTTTGACTGATTGTTTTCATT
TTTTTCCTTATTGCTATCTAACTTTGATCATCAGGTAGGTCCATTCAGCA
TCTAGCTTGTTCTATTTCATTCAAGATTCATGGAATTCTTAAGATATGAC
AGACTTTTATCTTCGGTTTGGATTTTTTTTCGTTATAGAGAGGTCCGAGA
GAATGTGATTCTTCACCAAAACGAAAATGAAATCACATACTTACAAAATT
ATTCATACGTTTTCGACCCTGCTACTTCATGTGCTAACTGCTCAGAAAAT
GATACGATCATCACTCCGAACCTTGCTGTCATCGTAAGATTCGTCTTCAT
CTACGTCCCGTTTTCATTGAGCTCTGAGAACGCCCTAGGCTGCACCCATC
CCCTCTTATATGTTTTGATATAGGGGAAGCATATCATGTATAAAATCTCC
GCCCGAGTCACCCCCGTCTTTGTGTTTTTGAGTTTTAGAAACTTTGTTAG
CTTGATTATAGTATTGAATTTGAATTGAAAATTTGAATTGCTCTAGGTTA
ATACAATCATTGGATTTCTGAACCTTGTTAAGAAAATTGAAACAGGTTAC
TCATGGACAGGAATTTGATACACGATTAGCATCCCCTATATCAAAACATA
TCAGAGGGGATGCTAGCAGCCTAAGAACGCTCATGATATAACCTGTTGTA
ATAAGATCGCTGATTTCAAATCGCAAAGTGGACGATTGGTATTGTTAGGT
TATTTCAAATTTTTCTTATCTGCATGTGGATATATCAGAAGTTGTTAAAC
TGCCAGCCTTCAATAAAGTACCCTGGTATGCTTTATCGATGGATAGTTTT
TTTATGATCTATCTTTTTTTCAGACATTTCAAACAAAATTGAAGGATTTG
AACATCACACCACAATCAGGATTTGTCAAGAGATGGGCCATTGAAGCTTT
AGATAAACTGTTGAATAATGACAAAACGTACAAAATGTTCATACCTTTGC
CAGTGCATGAACTGTTATGGGGATACACCAGTCCGTTCCTCGATCATCTG
GAAGGTCTCATACCAAAAGTCATACGGAACCTCATTCCGAACCTACCCCC
GCCTTTTATAGCTTTACAGGTAATTCTTTCATGTATTTGCTTACCCGGTG
AACATTTTGATCCCAACATCTCTCTTTACATATACAACTGGTAATACAGT
CGGCTTTCGCTTATTCGAACTAGAAAGGGGAATCTTATTATAAAAATTAT
TCTAAGAGGGTTTCTCTTGGAGGGGGCCGAAAGCAAATTTGAACGTTTGA
ACTACAGAAATATTCGAATAATAGAACTTCGAATAAGCGAGAGTTTACTG
TAGTTTAATATGTTTCTTCCATCTACCAGCAAAACGGTACAGCAGGTGCA
GTGGCGGTTGGAAATATCACCATTCTTACGGGCAATGAAGATATCAATAA
AGTTCAAATAACAACTAAATGGAGGGGGAAAAAGTAAGATTTTCTTGATC
TCTTATCTTCTTCTCATTCTGTACTAAACGTAGACTACAATCTGCTACAC
TAATCTACAACTACTTGATTGGATTGGGCTTCCCATATAAAAGCAAACGT
GCTTGTTTTAGAGCTGACTAGTCCACTATTTTGTATTCCATTCTGGTCGC
CAATATAATTCGGATGTTTTGAAATTCTAACGTTCGACAATCTAAGGTAA
ATTAGAAAACAAGATGGCAGAATAGTCGACTTCAAACCAATTTCAAACAA
ACTTCTACGGGAAATCTCTGAGCAGTTAGCTTAACTACAAAGGAATATGA
TAGTAGTGACGTAATCGCTTCGACTATCTAAACTTAAAAAACACCAAAAT
AAATTTCAACTATTCTCTCTCAGTTCCACAGGTTCTTGGAATGGAGACAA
GTTTACAAATTTTTGGCAAACACCTTATGGCAATATGATCAATGGAACAG
GTCAGCACTACTAGACGGTTCCCATCTTCCTTTTTTAAAGCACACCTCGA
AAGTAGATATTCAGACAAAATTCTTCTTCCTAAAATTTCTTTTCTTCAGC
TTTTCAAACAAATGAAAAAAAAATCCTCTTCCTTTACAGATGGATCCCAC
TTTCAACCTTACATCTCGAAAGATGACGTCATTTACATTTTCAATCCTCA
GTTATGCAGGTTAATAAGAATATTTTTAAAGAATAGTTTGTGTCACAGAT
GGTTCAAGATCTGTGCTCCGTATATCACTAGCTTTATTTTCCTCACCCAG
CCTCACAAACTGCGGGTGGGGTAGTATAGGTTGGCTTGTCACCCACTGTC
TGAACTCGTTTCTAAGAGATACCCTGAACAATGACTAAATTGAAAGCATA
CACTCCGACAGTTCAAAATTTTCCAAATACTCGTCCGATTAACAATTTGT
ATCCAACTGTAATGAAGCTAAATGAAGCTGTAAGTAAGAGTTGTACCCAA
AGAGAAATTATTGATTTAACATGGCTCCGAATGGGGTTCTAGGTCCCCCC
AACAAATTTAGGTCCCCCACTTTTCAGTAAGGTTCAAGTCCCAGTTGAAA
TCTAAAGGTTCAGGTCCCTGCAAAAAGTACTTTCAAGGTTCAGGTTCCAG
CAAAGAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNACTTAAAAAACACCAAAATAAA
TTTCAACTATTCTCTCTCAGTTCCACAGGTTCTTGGAATGGAGACGAGTT
TACAAATTTTTGGCAAACACCTTATGGCAATATGATCAATGGAACAGGTC
AGCACTACAAATGGAACTTTCAACTTTTTTAGCCATCCTTTTGACTCGAG
AACTATTCCCTCTCATCCTTTCTAGACGGCTTTTCAAAGCAAATGAAAAC
AAAAATCCTCTTCCTTTACAGATGGATCCCACTTTCAACCTTACATCTCG
AAAGATGACGTCATTTACATTTTCAATCCTCAGTTATGCAGGTTAATATG
AATATTTTTAAAGAATAGTTTGTGTCACAGATGGTTCAAGATCTGTGCTC
CGTATATCGCTAGCTTTATTTTCCTCACCCAGCCTCACAAACTGCGGGTG
GGGTAGTATAGGTTGGCTTGTCACCCTCTGTCTGAACTCGTTTCTAGGAG
ATGTACTGAACACTCCGACAGTTCAAAATTTTCCAAATACTCGTCCGATT
ACCAATTTGTATCCAACTGTAATGAAGCTAAATGAAGCTGTAAGTAAGAG
TTGTACCCAAAGAGAAATTATTGATTTTAAAAACCATTATGAAATTGTTA
CTTTGTCACATAGGTCGTTGTATTTGAATTATCAGAGAGATACAAGCATT
ATGGACATCAAATTATTACGCTACACAACGAGGGCGAAAATCTTCCAAAA
TTACACTGCCAACCCAGACAACAAAGCTTTCTGTGGTCCGAAACGTTGTT
ATCCAAGTGGCCTGTTACCAGTGGGACAGTGCCAGCCTGGCAGTAAGATT
TGTATTGTTAATTGGATAGTTTCATATCAGTTTTCAACGAGCCACTTGTT
TTTTAAGGGGATAATTCTTCTTTTACGGATGGATTCTTTTAAATGCAACG
TCTTTTGGTCTCAGCCAAGGCATCAAATTGCTTGATCAAGTTTTCTGGGT
TTGCCATCTAAAACTTTCATATTCATTTCTTTCAGATCCTCCAGTCTTTA
TGTCATCGCCACATTTCTACCAAGGATACCCAGCATTGTGGCAATCTTTC
AACGGGCTACATCCTGAGACAGATTTGCACGAAACGTATTTAAGTATTGA
ACCGGTAAGAAGAGTCCATTTTTCGACCAATAAACCACCACTCGCGTAGA
ATTTCAGCCCCCCCACCCAACCTTTACTTTGTGAAATTAGGACACTCACA
GTTCCTGGTTAAAACGAAAATTTCTTGATGAAAAACTTGATGGTTCATAC
ATTACAATCCGTTATTACCTTACATGATTTCGTTTTTTAAGAAAATATAT
AAACTTTTAAAGATTAGAAAGAATCACAATTTTTGCCCTGTTCTGTTTTT
TAAATTGCCAATACACCTAAAGATAGACCTTTCACCAGCTTTCACGATAA
ATAAGGAACCCATCTATGTTCTTCTGTTTCTAGACAACTGGGATCGTCAT
GGATGCACACAAACGTCTTCAAATCAACGTCAATATTCAAAAAGTCCCTT
ATATTTCGTAAGTTAAAAGTTACGTAGCTGAATAATCTTCTGTCTAAAGG
GCTGGAAGTAAAGAAGTAAATAAAGTAATCGAATTTAGTGATCCGCTTCC
TTTACGATCATGATGGAAAAAATTTATCATAATTCAGATTCCATATTGTC
TTTCAGGAGAACAGATGTATTTCCAGAGCAAGATAATTTCTATCCTGTTT
TGTTTGTGCATGAGGTAAGTAAACAAATAATTCCTGGTCGTAGCAAACTT
TGAATGGTGAATTTAACTCTGCCAAATCTCGTTTTGGTGAAGAGTGACTG
TAAAGTATATTCATTTCTATTATTGAAAACAATGAAATTTAGGGAAGCTC
TAAATTGACGATGTCTTTAACTAGGGTTTAAAAAAAGCCAGTAACTAACT
TATTTTGGACAAGTGCTCGTTATAATGTTATGACATTGATGATTTCAATC
ATTATTACTTACTCAGTATGCCACCATTGACAAAGCATCAGCAGATAGGT
TCAAGAAAGAAGTAATGTTACCAAAGCAGATGATCACTATAATGGAATAT
GGTTTGATCGGCCTGGGTGGCCTCTTTCTCATCATTGCTCTTGTATTGGG
TGCAAGACATCAAAGAAAAAAGAATCAACAATCCGTCTATACAGAAGTAA
GTTTTTGACTCCTTTTTACATCAGGAGTGCTCATCTCCTTAATAGAGCAT
TGTAGGGATGACATCTTGGAACATTGTCTTCCATCATTGGAAGCGTCGTG
TTTCTTCACTCCTTTGAAGCCGTTACACTTACCACAATATCTATTTAGTT
ACAAAGAATCCTACTTATGCGCTCTACTATAATTGATATGGTTTGATTCT
TGAATTGAATGCCAGCTTCCATTCATTACTCTTTTATCGTCAGTGGTTTA
ATAAGGACTAATTTTCTTCTTTACCTGGACTCTACGCTTTTTCTTCACTC
CAGTAATATTCTTTATATTATTTGATTTCAGTTTTCGAATGAGGACAATG
AAAAGAACATACAACAGGTAACCTACCCTATTTGAACTTAGTTTTATCCT
ATTTTACATTGTTTTTATTATTCTTACTCTGTGTTAGTCATTTTATACCT
TTTACACGAATTACGATGTACGACTGTGTACGACGAACCCATTTTAAACT
TACTGCAGTACGTGCTGCCTAAATAAAGACGCCTCTTCCACCGTTTATTT
TTTTAGAAAAAAGGACATTGACGAACAACCAAATGAGACTGCTAGGCTGA
TAATGACTTAATTAAAATACTAATGACTACTAAGTTTTAAATGACAGGGA
CAGATAGTTTTTTCTAACCTAGCGGTTTTTCTACGTCGTAACATTTTAGT
CATCTTTGAAAAAAAGTTCTTTTTTTGCTCTTTTTTAATGGTAATGTGAG
TTATTACCGGCATATTTAAGAAAGTAAAATTTCTCAAAAAAGTAATTGTT
TTAACTGACATTTAATTATTTTACAATTGATTTAACACACGAAAATTTTA
TTTAGAAGTATTTTGTATCTTGTAAATAGCATTTTGAAGTATAATTTAGA
CAATGATTTCTGGAAATATATTTCTTTTCAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_039392	XLOC_039392	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_373	supercontig	scaffold_373:64516..77146 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.47884e-06	0.000724338	2.38413e-09	0	1.71945e-08	6.31984e-06	2.70155e-09	7.35165e-09	1.73535e-07	3.47918e-07	3.31652e-09	1.36266e-10	5.74533e-05	2.07073e-05	1.84381e-06	2.86378e-08	3.22065e-08	7.44657e-10	1.48894e-07	4.38419e-10	3.33322e-06	7.2716e-06	0.000452719	1.57986e-07	0	0	0	0.0220869	0.00104869	0.0111425

Blast

[Close]

BLAST of TCONS_00062888 vs. Swiss-Prot (Human)
Match: SCRB2 (Lysosome membrane protein 2 OS=Homo sapiens GN=SCARB2 PE=1 SV=2)

HSP 1 Score: 231.876 bits (590), Expect = 3.982e-65
Identity = 151/441 (34.24%), Postives = 224/441 (50.79%), Query Frame = 1

Query: 2785 TVLKQLVMKYSDSSGGNEAYKNWNSPPAPVYMQFYMFNYTNVDEIINEKAKPNVTQLGPYSYREVR--ENVILHQNENEITYLQNYSYVFDPATSCANCSENDTIITPNLAVITFQTKLKDLNITPQSGFVKRWAIEALDKLLNNDKTYKMFIPLPVHELLWGYTSPFLDHLEGLIPKVIRNLIPNLPPPF-IALQQNGTAGAVAVGNITILTGNEDINKVQITTKWRGKNSTGSWNGDKFTNFWQTPYGNMINGTDGSHFQPYISKDDVIYIFNPQLCRSLYLNYQRDTSIMDIKLLRYTTRAKIFQNYTANPDNKAFCGPK-RCYPSGLLPVGQCQPGNPPVFMSSPHFYQGYPALWQSFNGLHPETDLHETYLSIEPTTGIVMDAHKRLQINVNIQKV-PYISRTDVFPEQDNFYPVLFVHEYATIDKASADRFKKEV 4092
            ++ K++V++      G EA+ +W  PP PVY QFY FN TN +EI+  +  P V ++GPY+YRE+R   N+    N   I+ + N +YVF+   S  +  + D I T N+ V+T         I        R  IEA+ K        K+F+   V ELLWGY    L         +I    P++ P F +  ++NGT      G+   LTG +         +W GK S   W  DK          NMINGTDG  F P I+KD+V+Y+F    CRS+Y+ +    S+  +   RY   A+I  N +   DN  FC P+  C  SG+L V  C+ G  P+ MS PHFYQ       +  G+HP  + HET++ I P TGI++ A KR QIN+ ++K+  ++   D+   +   +PV++++E   IDK +A R K  +
Sbjct:   36 SIEKKIVLR-----NGTEAFDSWEKPPLPVYTQFYFFNVTNPEEILRGET-PRVEEVGPYTYRELRNKANIQFGDNGTTISAVSNKAYVFERDQSVGD-PKIDLIRTLNIPVLTV--------IEWSQVHFLREIIEAMLKAYQQ----KLFVTHTVDELLWGYKDEIL--------SLIHVFRPDISPYFGLFYEKNGTND----GDYVFLTGEDSYLNFTKIVEWNGKTSLDWWITDK---------CNMINGTDGDSFHPLITKDEVLYVFPSDFCRSVYITFSDYESVQGLPAFRYKVPAEILANTS---DNAGFCIPEGNCLGSGVLNVSICKNG-APIIMSFPHFYQADERFVSAIEGMHPNQEDHETFVDINPLTGIILKAAKRFQINIYVKKLDDFVETGDI---RTMVFPVMYLNESVHIDKETASRLKSMI 429

HSP 2 Score: 124.79 bits (312), Expect = 1.488e-29
Identity = 71/215 (33.02%), Postives = 110/215 (51.16%), Query Frame = 1

Query:  727 DLQRIVKWRGSDEVPHWLTKYGRMINGTDGTHFKPFVTKSDQLYAFIPDICRSIYIVYDQEDSVQNIDLYRYTTDEYSMLNHTANPDNEAFCV-XXXXXXXXXXXXXXXDGDPPVYASGVHFYQSDPALFEAVDGLSNPDKEKHATLISVEPDTGTTMKANKRLQINVKAEYVEFFPKTYGFPKGD--GIYFPVFYVDEEFKLDEANAKTFEDEV 1362
            +  +IV+W G   +  W+T    MINGTDG  F P +TK + LY F  D CRS+YI +   +SVQ +  +RY      + N +   DN  FC+  G      +          P+  S  HFYQ+D     A++G+ +P++E H T + + P TG  +KA KR QIN+  + ++ F +T     GD   + FPV Y++E   +D+  A   +  +
Sbjct:  224 NFTKIVEWNGKTSLDWWITDKCNMINGTDGDSFHPLITKDEVLYVFPSDFCRSVYITFSDYESVQGLPAFRYKVPAEILANTS---DNAGFCIPEGNCLGSGVLNVSICKNGAPIIMSFPHFYQADERFVSAIEGM-HPNQEDHETFVDINPLTGIILKAAKRFQINIYVKKLDDFVET-----GDIRTMVFPVMYLNESVHIDKETASRLKSMI 429

The following BLAST results are available for this feature:

BLAST of TCONS_00062888 vs. Swiss-Prot (Human)

BLAST of TCONS_00062888 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SCRB2	3.982e-65	34.24	Lysosome membrane protein 2 OS=Homo sapiens GN=SCA...	[more]

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TCONS_00062888 (transcript) - C. hemisphaerica