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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062802 ID=TCONS_00062802|Name=TCONS_00062802|organism=Clytia hemisphaerica|type=transcript|length=2048bp
GCATTGAAATGTACTTCAGCTAAAATGTATGAATAATTTAATGGGAATGT
AGCTTTTCATTGAGTATAACATTGGAAGAATaagattttaagaaaatgtA
CGCCTTCCAAAGAAGCAGCCAAACTCTAAGAATTTATATTGAAGTGTATA
AATAACCATTTTCGAACCAAGTCAATCGCTCTACAAAACCTATATACGAG
AAAGAGAAATATTCATTTGAAAATATATGATATGACCATATATAAATGGT
GAAACAATGATAAATGTGCATCGAGATGTGCAGCGAGTTATTTATAAAAG
TATTATAATAGGTAAAGAATAGTTAAATCAGCTAAAATCGTAGGTATTTG
GTAGCTCACATCATGTATTAGAGTTCTACTGAGCTGTACAACTTTTGAAG
AATCGAAAGAAGTCCTTTTTGGTTACCGGGTGACAACCGCCGTACTGGAC
AAACTATAAGATTATGAAGAAAccttattttattttgttgctGTGTATTA
CCATATTGGCATTTTATTTCATGTTTGAGTCATGGAATCAAGATATACTG
GACAAAAAATCGATACTCAACATTCAACCTTTACCGGTAGCAATTGAAGC
TCAAGATTCTGTTACAGAAATACTTAAAAGTAAAATCATTTTGACCgcta
aagagaaaaaaaggaagaatgtTCATTTTCTGTATGAGGATGAAAAGGCG
TATATAAGTAAGACGCCAACCGACAAAATTGTTTATCAACGTGCAGTAAA
CGATATGGCGTCCATTAAAACAGATACCTTATCGAGTAGTCTGAACTCTT
CatttatgaatttttcaaaaagcttaaACAATCGGAAAGTCAAGAAGAGT
GTTCAAAATTTTACTGCCAATATGAACATAAATGAAACAACAAACTCATC
TTATCTTAATGATATCAGCTTTAAAAATCAAACCCAACaaaaaaaaagct
caaaaacgaTACTAGTTTATACAAGATATTCAGAATCGAAAATATGGCCA
AGAATGAAACCAACGGACCTTGTGAAAGAGCTTGACGGTTCTTCATGCGG
TAACAACATTTGTAGCTTAACTTACAACAAGACAATGCTTTTGCAGAGTG
ATGCAGTGTTATTTCACGAGCCTTACCTACCTTCCAGCATATTACTGAAA
CATCTAAGAGCGGTTGTTCCAGAATCGCAATTTTGGATATGGAATTTACG
GGAGCCTCCGACGCATCTTACAAAAGATTTAAGTcgatataataatattt
tcaattgGACTTGTACGTATAGTCGAAAATCTGAAGTTTATGATCCTATT
TTTCATATAGTCAGTAAGGCGGTGAAGAAAACTTTGACAAGTCAAGATTT
CTCTAAAGGGAGGACAAAGATGATTTTTGCAGCAATTAATAATTGTTTTG
GTGAGAGAGTTTTAATGATCAAACGATTAAAGAAATTGGTCTCGTTTGAT
GTTTATGGAgcatgtggaagaaaagttGGAGATGCCAACCTACCACCATG
TCCAAGgTTTACTGAATCCTGTTCCAAGATAATGCGAAAATACCATTTCT
ATTTTGCAATGGAGAATTCGTACTGTGATAATTATATTACGGAGAAATAT
TATCAAAACGGTTTACTAAACAGTCTTATACCCATTGTCCTCGGTGGTGC
ACATTACGGAGATAATCGAATGGCAATAAGTCATAGTTATATCAATTTGC
AAGATTTTGATAGCTTAGAAAATCTAACTAACTTTCTTGAATACCTTGCA
AATAATAAGACAGCTTATAACAAGTATTTTTGGTGGAGAGATTTTCATGA
AATCAAAAGACAATCAAAAGTATGTGCTGTTTGTAAAAGACTTTGGGAAT
CAGAAAAAGCGGATAAGGAAATCGACACCACAAGTTACAATTCAACAACC
GGACACGAGTTAAGTACGTTTTGGAGCGtaaagaaaaattgtaaaagttg
GATGAAAATAATCTCGAAATATATTTAATCagttataaatttttttcagt
acgCTACCGTACGCTTTTTTTCAAATCCAAGAAATTTTCATGTTCACG Run BLAST on NCBI protein sequence of TCONS_00062802-protein >TCONS_00062802-protein ID=TCONS_00062802-protein|Name=TCONS_00062802-protein|organism=Clytia hemisphaerica|type=polypeptide|length=504bp
MKKPYFILLLCITILAFYFMFESWNQDILDKKSILNIQPLPVAIEAQDSV
TEILKSKIILTAKEKKRKNVHFLYEDEKAYISKTPTDKIVYQRAVNDMAS
IKTDTLSSSLNSSFMNFSKSLNNRKVKKSVQNFTANMNINETTNSSYLND
ISFKNQTQQKKSSKTILVYTRYSESKIWPRMKPTDLVKELDGSSCGNNIC
SLTYNKTMLLQSDAVLFHEPYLPSSILLKHLRAVVPESQFWIWNLREPPT
HLTKDLSRYNNIFNWTCTYSRKSEVYDPIFHIVSKAVKKTLTSQDFSKGR
TKMIFAAINNCFGERVLMIKRLKKLVSFDVYGACGRKVGDANLPPCPRFT
ESCSKIMRKYHFYFAMENSYCDNYITEKYYQNGLLNSLIPIVLGGAHYGD
NRMAISHSYINLQDFDSLENLTNFLEYLANNKTAYNKYFWWRDFHEIKRQ
SKVCAVCKRLWESEKADKEIDTTSYNSTTGHELSTFWSVKKNCKSWMKII
SKYI Run BLAST on NCBI transcript from alignment at scaffold_372:387374..389869+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062802 ID=TCONS_00062802|Name=TCONS_00062802|organism=Clytia hemisphaerica|type=transcript|length=2496bp|location=Sequence derived from alignment at scaffold_372:387374..389869+ (Clytia hemisphaerica)
GCATTGAAATGTACTTCAGCTAAAATGTATGAATAATTTAATGGGAATGT
AGCTTTTCATTGAGTATAACATTGGAAGAATaagattttaagaaaatgtA
CGCCTTCCAAAGAAGCAGCCAAACTCTAAGAATTTATATTGAAGTGTATA
AATAACCATTTTCGAACCAAGTCAATCGCTCTACAAAACCTATATACGAG
AAAGAGAAATATTCATTTGAAAATATATGATATGACCATATATAAATGGT
GAAACAATGATAAATGTGCATCGAGATGTGCAGCGAGTTATTTATAAAAG
TATTATAATAGGTAAAGAATAGTTAAATCAGCTAAAATCGTAGGTATTTG
GTAGCTCACATCATGTATTAGAGTTCTACTGAGCTGTACAACTTTTGAAG
AATCGAAAGAAGTCCTTTTTGGTTACCGGGTGACAACCGCCGTACTGGAC
AAACTATAAGATTATGAAGAAAccttattttattttgttgctGTGTATTA
CCATATTGGCATTTTATTTCATGTTTGAGTCATGGAATCAAGATATACTG
GACAAAAAATCGATACTCAACATTCAACCTTTACCGGTAGCAATTGAAGC
TCAAGATTCTGTTACAGAAATACTTAAAAGTAAAATCATTTTGACCgcta
aagagaaaaaaaggaagaatgtTCATTTTCTGTATGAGGATGAAAAGGCG
TATATAAGTAAGACGCCAACCGACAAAATTGTTTATCAACGTGCAGTAAA
CGATATGGCGTCCATTAAAACAGATACCTTATCGAGTAGTCTGAACTCTT
CatttatgaatttttcaaaaagcttaaACAATCGGAAAGTCAAGAAGAGT
GTTCAAAATTTTACTGCCAATATGAACATAAATGAAACAACAAACTCATC
TTATCTTAATGATATCAGCTTTAAAAATCAAACCCAACaaaaaaaaagct
caaaaacgaTACTAGTTTATACAAGATATTCAGAATCGAAAATATGGCCA
AGAATGAAACCAACGGACCTTGTGAAAGAGCTTGACGGTTCTTCATGCGG
TAACAACATTTGTAGCTTAACTTACAACAAGACAATGCTTTTGCAGAGTG
ATGCAGTGTTATTTCACGAGCCTTACCTACCTTCCAGCATATTACTGAAA
CATCTAAGAGCGGTTGTTCCAGAATCGCAATTTTGGATATGGAATTTACG
GGAGCCTCCGACGCATCTTACAAAAGATTTAAGTcgatataataatattt
tcaattgGACTTGTACGTATAGTCGAAAATCTGAAGTTTATGATCCTATT
TTTCATATAGTCAGTAAGGCGGTGAAGAAAACTTTGACAAGTCAAGATTT
CTCTAAAGGGAGGACAAAGATGATTTTTGCAGCAATTAATAATTGTTTTG
GTGAGAGAGTTTTAATGATCAAACGATTAAAGAAATTGGTCTCGTTTGAT
GTTTATGGAgcatgtggaagaaaagttGGAGATGCCAACCTACCACCATG
TCCAAGGTAAATAAAGAAAGGATTTAAAACTCTTAGAAAACTATTAGAGC
TTACTAAACACAGAGCAGAGCAGCTAAACCAAAGCATTTCTCCAAACAAT
TCTCTTCATGAAACTGTGAAAGTTTTAGATGAATACAAAATGGTAAAGTT
GATCCTCGCTAATTCGAATGGGGATTCTTATTCGTTCGAACAACACAGGg
agattcaaattatagaaagtatttcaagTGGGGTTTCCCCCTATGCTTCT
TCTCATCCTTTAGCGAAAAAGATTTCTTATAAAGGCTGCTTAGTACTCGG
TAAATCCTCTTTCCCACAAAATGCCACTTCTCGCCGAAACACCAAAAAAC
ACCATTAGCCATGTCGTCATGCCACTAACCAACTATTGAGGTAGGGGTGT
AGAGATATCATAATTTGTCAAATTGAACtaagatttaaaatatttctatt
ttaggTTTACTGAATCCTGTTCCAAGATAATGCGAAAATACCATTTCTAT
TTTGCAATGGAGAATTCGTACTGTGATAATTATATTACGGAGAAATATTA
TCAAAACGGTTTACTAAACAGTCTTATACCCATTGTCCTCGGTGGTGCAC
ATTACGGAGATAATCGAATGGCAATAAGTCATAGTTATATCAATTTGCAA
GATTTTGATAGCTTAGAAAATCTAACTAACTTTCTTGAATACCTTGCAAA
TAATAAGACAGCTTATAACAAGTATTTTTGGTGGAGAGATTTTCATGAAA
TCAAAAGACAATCAAAAGTATGTGCTGTTTGTAAAAGACTTTGGGAATCA
GAAAAAGCGGATAAGGAAATCGACACCACAAGTTACAATTCAACAACCGG
ACACGAGTTAAGTACGTTTTGGAGCGtaaagaaaaattgtaaaagttgGA
TGAAAATAATCTCGAAATATATTTAATCagttataaatttttttcagtac
gCTACCGTACGCTTTTTTTCAAATCCAAGAAATTTTCATGTTCACG Coding sequence (CDS) from alignment at scaffold_372:387374..389869+ >TCONS_00062802 ID=TCONS_00062802|Name=TCONS_00062802|organism=Clytia hemisphaerica|type=CDS|length=3030bp|location=Sequence derived from alignment at scaffold_372:387374..389869+ (Clytia hemisphaerica)
ATGAAGAAAccttattttattttgttgctGTGTATTACCATATTGGCATT
TTATTTCATGTTTGAGTCATGGAATCAAGATATACTGGACAAAAAATCGA
TACTCAACATTCAACCTTTACCGGTAGCAATTGAAGCTCAAGATTCTGTT
ACAGAAATACTTAAAAGTAAAATCATTTTGACCgctaaagagaaaaaaag
gaagaatgtTCATTTTCTGTATGAGGATGAAAAGGCGTATATAAGTAAGA
CGCCAACCGACAAAATTGTTTATCAACGTGCAGTAAACGATATGGCGTCC
ATTAAAACAGATACCTTATCGAGTAGTCTGAACTCTTCatttatgaattt
ttcaaaaagcttaaACAATCGGAAAGTCAAGAAGAGTGTTCAAAATTTTA
CTGCCAATATGAACATAAATGAAACAACAAACTCATCTTATCTTAATGAT
ATCAGCTTTAAAAATCAAACCCAACaaaaaaaaagctcaaaaacgaTACT
AGTTTATACAAGATATTCAGAATCGAAAATATGGCCAAGAATGAAACCAA
CGGACCTTGTGAAAGAGCTTGACGGTTCTTCATGCGGTAACAACATTTGT
AGCTTAACTTACAACAAGACAATGCTTTTGCAGAGTGATGCAGTGTTATT
TCACGAGCCTTACCTACCTTCCAGCATATTACTGAAACATCTAAGAGCGG
TTGTTCCAGAATCGCAATTTTGGATATGGAATTTACGGGAGCCTCCGACG
CATCTTACAAAAGATTTAAGTcgatataataatattttcaattgGACTTG
TACGTATAGTCGAAAATCTGAAGTTTATGATCCTATTTTTCATATAGTCA
GTAAGGCGGTGAAGAAAACTTTGACAAGTCAAGATTTCTCTAAAGGGAGG
ACAAAGATGATTTTTGCAGCAATTAATAATTGTTTTGGTGAGAGAGTTTT
AATGATCAAACGATTAAAGAAATTGGTCTCGTTTGATGTTTATGGAgcat
gtggaagaaaagttGGAGATGCCAACCTACCACCATGTCCAAGgTTTACT
GAATCCTGTTCCAAGATAATGCGAAAATACCATTTCTATTTTGCAATGGA
GAATTCGTACTGTGATAATTATATTACGGAGAAATATTATCAAAACGGTT
TACTAAACAGTCTTATACCCATTGTCCTCGGTGGTGCACATTACGGAGAT
AATCGAATGGCAATAAGTCATAGTTATATCAATTTGCAAGATTTTGATAG
CTTAGAAAATCTAACTAACTTTCTTGAATACCTTGCAAATAATAAGACAG
CTTATAACAAGTATTTTTGGTGGAGAGATTTTCATGAAATCAAAAGACAA
TCAAAAGTATGTGCTGTTTGTAAAAGACTTTGGGAATCAGAAAAAGCGGA
TAAGGAAATCGACACCACAAGTTACAATTCAACAACCGGACACGAGTTAA
GTACGTTTTGGAGCGtaaagaaaaattgtaaaagttgGATGAAAATAATC
TCGAAATATATTTAAATGAAGAAAccttattttattttgttgctGTGTAT
TACCATATTGGCATTTTATTTCATGTTTGAGTCATGGAATCAAGATATAC
TGGACAAAAAATCGATACTCAACATTCAACCTTTACCGGTAGCAATTGAA
GCTCAAGATTCTGTTACAGAAATACTTAAAAGTAAAATCATTTTGACCgc
taaagagaaaaaaaggaagaatgtTCATTTTCTGTATGAGGATGAAAAGG
CGTATATAAGTAAGACGCCAACCGACAAAATTGTTTATCAACGTGCAGTA
AACGATATGGCGTCCATTAAAACAGATACCTTATCGAGTAGTCTGAACTC
TTCatttatgaatttttcaaaaagcttaaACAATCGGAAAGTCAAGAAGA
GTGTTCAAAATTTTACTGCCAATATGAACATAAATGAAACAACAAACTCA
TCTTATCTTAATGATATCAGCTTTAAAAATCAAACCCAACaaaaaaaaag
ctcaaaaacgaTACTAGTTTATACAAGATATTCAGAATCGAAAATATGGC
CAAGAATGAAACCAACGGACCTTGTGAAAGAGCTTGACGGTTCTTCATGC
GGTAACAACATTTGTAGCTTAACTTACAACAAGACAATGCTTTTGCAGAG
TGATGCAGTGTTATTTCACGAGCCTTACCTACCTTCCAGCATATTACTGA
AACATCTAAGAGCGGTTGTTCCAGAATCGCAATTTTGGATATGGAATTTA
CGGGAGCCTCCGACGCATCTTACAAAAGATTTAAGTcgatataataatat
tttcaattgGACTTGTACGTATAGTCGAAAATCTGAAGTTTATGATCCTA
TTTTTCATATAGTCAGTAAGGCGGTGAAGAAAACTTTGACAAGTCAAGAT
TTCTCTAAAGGGAGGACAAAGATGATTTTTGCAGCAATTAATAATTGTTT
TGGTGAGAGAGTTTTAATGATCAAACGATTAAAGAAATTGGTCTCGTTTG
ATGTTTATGGAgcatgtggaagaaaagttGGAGATGCCAACCTACCACCA
TGTCCAAGgTTTACTGAATCCTGTTCCAAGATAATGCGAAAATACCATTT
CTATTTTGCAATGGAGAATTCGTACTGTGATAATTATATTACGGAGAAAT
ATTATCAAAACGGTTTACTAAACAGTCTTATACCCATTGTCCTCGGTGGT
GCACATTACGGAGATAATCGAATGGCAATAAGTCATAGTTATATCAATTT
GCAAGATTTTGATAGCTTAGAAAATCTAACTAACTTTCTTGAATACCTTG
CAAATAATAAGACAGCTTATAACAAGTATTTTTGGTGGAGAGATTTTCAT
GAAATCAAAAGACAATCAAAAGTATGTGCTGTTTGTAAAAGACTTTGGGA
ATCAGAAAAAGCGGATAAGGAAATCGACACCACAAGTTACAATTCAACAA
CCGGACACGAGTTAAGTACGTTTTGGAGCGtaaagaaaaattgtaaaagt
tgGATGAAAATAATCTCGAAATATATTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062802-exon-scaffold_372-1491911889:387374..388879 | TCONS_00062802-exon-scaffold_372-1491911889:387374..388879 | Clytia hemisphaerica | exon |
| TCONS_00062802-exon-scaffold_372-1510915933:387374..388879 | TCONS_00062802-exon-scaffold_372-1510915933:387374..388879 | Clytia hemisphaerica | exon |
| TCONS_00062802-exon-scaffold_372-1575043694:387374..388879 | TCONS_00062802-exon-scaffold_372-1575043694:387374..388879 | Clytia hemisphaerica | exon |
| TCONS_00062802-exon-scaffold_372-1491911889:389328..389869 | TCONS_00062802-exon-scaffold_372-1491911889:389328..389869 | Clytia hemisphaerica | exon |
| TCONS_00062802-exon-scaffold_372-1510915933:389328..389869 | TCONS_00062802-exon-scaffold_372-1510915933:389328..389869 | Clytia hemisphaerica | exon |
| TCONS_00062802-exon-scaffold_372-1575043694:389328..389869 | TCONS_00062802-exon-scaffold_372-1575043694:389328..389869 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_372 | supercontig | scaffold_372:387374..389869 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008417 | fucosyltransferase activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006486 | protein glycosylation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006486 |
protein glycosylation |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0008417 |
fucosyltransferase activity |
Blast
BLAST of TCONS_00062802 vs. Swiss-Prot (Human)
Match: FUT7 (Alpha-(1,3)-fucosyltransferase 7 OS=Homo sapiens GN=FUT7 PE=1 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 4.133e-29 Identity = 84/288 (29.17%), Postives = 138/288 (47.92%), Query Frame = 2
Query: 1013 TDLVKELDGSSC---GNNICSLTYNKTMLLQSDAVLFHEPYLPSSILLKHLR-AVVPESQFWIWNLREPPTHLTKDLSRYNNIFNWTCTYSRKSEVYDPIFHIVSKAVKKTLTSQDFSKGRTKMIFAAINNCFGERVL---MIKRLKKLVSFDVYG-ACGRKVGDANLPPCPRFTESCSKIMRKYHFYFAMENSYCDNYITEKYYQNGLLNSLIPIVLGGAHYGDNRMAISHSYINLQDFDSLENLTNFLEYLANNKTAYNKYFWWRDFHEIKR----QSKVCAVCKR 1840
TD EL +C G C L+ N+++L +DAV+FH L HL A P Q W+W E P+H T LS IFNW +Y R S+++ P ++ ++++ ++N F ER L + ++L + DV+G A GR + + L P + +Y FY + ENS +YITEK+++N L+ +P+VLG + +++++ DF S L FL + N++ Y ++F WRD ++ + + CA+C R
Sbjct: 57 TDQPPELPSDTCTRYGIARCHLSANRSLLASADAVVFHHREL--QTRRSHLPLAQRPRGQPWVWASMESPSH-THGLSHLRGIFNWVLSYRRDSDIFVPY-----GRLEPHWGPSPPLPAKSRVAAWVVSN-FQERQLRARLYRQLAPHLRVDVFGRANGRPLCASCLVP----------TVAQYRFYLSFENSQHRDYITEKFWRNALVAGTVPVVLGPPRATYEAFVPADAFVHVDDFGSARELAAFLTGM--NESRYQRFFAWRDRLRVRLFTDWRERFCAICDR 323
The following BLAST results are available for this feature:
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