TCONS_00062795 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062795
Unique NameTCONS_00062795
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1380

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062795 ID=TCONS_00062795|Name=TCONS_00062795|organism=Clytia hemisphaerica|type=transcript|length=1380bp
cacaaatattttcatttcgcgtcctcgttgggtcttaaaagtgagtcggt
cggttggtcgtaaaaattttcgggtttccatttttccatccctttttctt
aataaatatCATCACTTAATTCTCTAAAATCTCCTTTTCCAGAGTGGATA
CAACCAACAGAGACCTGCATACCAGCAGCAACAACAAGGCTATCAGCAAC
AGAATCCTTACGGTCAACAACATTATGGTCAACAGCAACATGGTCAACAG
CAACAGCATCAACAATacaatcaacaacaacaacagcaacatggTGGATA
TCCTCCACAGAGAGCTCCAGGTGGATATCAAGCACAGCAGGGACCTCCTC
CTGGCATTGACCCTACTCTATGGGGATGGTTTCAGGCAGTTGACCAAGAT
GGATCAGGTTCCATAACAGCGGAAGAACTTCAaaaagcgttattaaataa
TAATTGGTCACACTTCAATGCAGAAACGTGTCGATTGATGATAGGAATGT
TTGACAAAAATAGATCTGGAACTATTGATATTTACGAGTTTGCAGCATTA
TGGAAATATGTTCAAGACTGGAAACAATGCTTTGATGGGTTTGACCGTGA
CAGATCAGGTTCAATTGATGAGCAAGAACTTGCACAAGCTTTCACGTCTT
TTGGATATCGACTaACACCACAGTTTTGTCAGTTGTGCGTACGTGTATTT
GATCGGCACAATGTCAGGACaatgaaatttgatgatttCATTCAGTGTTN
TATTTGATCGACACAATGTCAGGACAATGAAGTTTGATGATTTCATTCAG
TGTTGTGTTATGCTGAAAACTTTAACAGATGCATTCCGTAAACATGATAC
AAATCAAAATGGTGTCATACAAATCAATTATGAACAGTTCTTAGAGATGG
TATTGGATAACACATTGAGTGGGAtctaaacaattttcaaaaaaggaggA
ATTTCTTTGAGAAGTTGTTGTGTGGTGCAAGGTTGTCAACTAAAACACTA
GGATGACTGGTTGATTAAATTGGGGCTTTCAGCTTTAGATATGTCATATG
CatatacatatttttaaaagaatttaccATGAAATTTGTATCAATGAGTC
GTAGTATTTATAAGTTTAAactttttgtataatttttgttATCATCTTTC
CCTTGTTTGCATTCATAATGCCTTGTTCAAATTTAAATCTTTATTTGATA
AAGATTGTCGTataatatttgaattttttttaaagtgactAACAACAAAA
GCTTGACAAAATCTCTGTATGTCTGTTTTCTTTGTTTAATTTATGAATGA
TTTTTTACTACTTCTTCTTATTATTGATATGATAAATTATTATAACCATG
CGGGTGATGAGGGGAAATATATCAGTTAAT
Run BLAST on NCBI

transcript from alignment at scaffold_372:222959..227193+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062795 ID=TCONS_00062795|Name=TCONS_00062795|organism=Clytia hemisphaerica|type=transcript|length=4235bp|location=Sequence derived from alignment at scaffold_372:222959..227193+ (Clytia hemisphaerica)
cacaaatattttcatttcgcgtcctcgttgggtcttaaaagtgagtcggt
cggttggtcgtaaaaattttcgggtttccatttttccatccctttttctt
aataaatatCATCACTTAATTCTCTAAAATCTCCTTTTCCAGAGTGGATA
CAACCAACAGAGACCTGCATACCAGCAGCAACAACAAGGCTATCAGCAAC
AGAATCCTTACGGTCAACAACATTATGGTCAACAGCAACATGGTCAACAG
CAACAGCATCAACAATacaatcaacaacaacaacagcaacatggTGGATA
TCCTCCACAGAGAGCTCCAGGTGGATATCAAGCACAGCAGGGACCTCCTC
CTGGCATTGACCCTACTCTATGGGGATGGTTTCAGGTGATTTATTGATCT
TTTTGTCAGTTAAGTTAATTATTCAATGATAATGATCCACATATATTCAT
AATTCATGTAAGAAAGTTATATCAGGATTTCAATCCTTAAAGCCAATTTA
TCCATATAATGAAGTTGTTTGCTGATTGAAAATAGAAAGTATTAATTTAT
CTATCAAAAATGTAGAACATTCCTTTTAGTTCTTAGAAAGCAGACATTCT
ATTGTCTCTAAAATCAAATGATATAATACCCTCTTTTTAATAGGGGGATG
TCATATTTTTGGAGGCTATCAAGATTTGCCTAAATAACTAAGGAGGTCAA
ATAAGAAAGAGGGTTCAGAAATTTTGGTCAACTTAATCATATAAAATTGT
CACAAtctgctttaaaatgaaaatataataccatcaaaacacaaaattgT
ATCATGTTAATAAAATTGCTAGTTATACTTTTATATTGTGAAATTGTTGG
CTCAAGACCATATACTTTTTGTACTTCTTTGATCACTTTGGTAGCACATA
GAACAAGTTTCCTTTGAAacagattttctgtaaaaaaagtgTTTAGCATA
AAACTCTCTAGAGGTTtggtttaacttttttaatttttctagtcatagaa
aatgtcatttaatttttaaaacattctttttcatgaaaaaatttagGCAG
TTGACCAAGATGGATCAGGTTCCATAACAGCGGAAGAACTTCAaaaagcg
ttattaaataaTAATTGGTCACACTTCAATGCAGAAACGTGTCGATTGAT
GATAGGAATGTTTGACAAAAATAGGTAGGTTTGATGTGCAAATGCTAAAA
ACTCTTTTCTTGGCTAAGAACTGGTGTGCTTGCCTCATTGTCACTATTAT
ATTAATTTTGCTGAAGCCAAGAAAGTTTTATAGCTTAGTCACCTTCCATA
GGAAAATAACTATAAAACTCTTTAATAACATTCACCTTTGCCCTGAAGCT
TCATCTGTCCAGGTAAATTTTTGTCTCAGTCAggcttgaaaatgaagaca
GTGTGTCTATTCAAAAGGTAGCAAACTTCAAGAGCTTcctccaatttttt
aaatgttagTAGATTATTTAAAAATACTCTTCTCTTTGCAAGAATGGAAT
GCTCATTCAGCAATCCCTTTAACATTGATTTCACGTAAGATTGGCATACA
TACCTAAAATGATGAATCTTCTTCCAAGCTGAAAGAAATTCAATGTAAGG
CTATTTTTTGTTTGTGTCTTTCAGATCTGGAACTATTGATATTTACGAGT
TTGCAGCATTATGGAAATATGTTCAAGACTGGAAACAATGCTTTGATGGG
TTTGTCTTTCTTTCCACATactgttttttttccaaataaaagGCATATTT
TTCTTAGTTTATTAATACTTAGTTCTGACTCAACATCAATCGTCTttaga
tttttgtatttttctgacGTCACAAATTTTCTTGGCTTGTCTTTGCTGAT
TTCTCATCATTTGTTTGAAAGATGACTATTTGTGATGCCTTtctaatttt
atcaaacaaatgtTAAAACTTTACGCATTGAAAATGGCTACCACTACCTG
AATTTTGAGACCTTACTAAATTTATaaacaccaaaaaaaaaatatccaac
ACAAAATTACAACCAAAATGAATCAAGAAAAATCACTGAGCtataataaa
tattaaaaatgcaCGGAACTCAAATAATAATTAGTTGTTGAagaaagtga
aatatttttattgataaTTTATTGTTATAACTACTACATGATTTATATTG
GAATTTATTTGCCCATAATGTAACCAATTGCCTGAATTCTTAACAGAAAT
AATAGATCAttctaaaaaattttaagatacACTTTCATTTCAATAGGTTT
GACCGTGACAGATCAGGTTCAATTGATGAGCAAGAACTTGCACAAGCTTT
CACGTCTTTTGGATATCGACTGTTAGTATAGAAATAGTTTACGTTCATAA
ACTACTCTGAATGGCTTTCTTTAATACTTTGCTTTAGATGTTTATTACCA
AGTAAGATCTTAATCACTTTATCAAATCTGTTACAAAGTCaataaaaatg
gtattttcCTGCAGATGATGAAAATAATTCCAAAGAAATAACCTAAATGA
CCAAGGATAACCATAGATAACATTACAATTTCAATGTGGTGCATTACAtt
cattgttttattattttcatagaACACCACAGTTTTGTCAGTTGTGCGTA
CGTGTATTTGATCGGCACAATGTCAGGACaatgaaatttgatgatttCAT
TCAGTGTTNTATTTGATCGACACAATGTCAGGACAATGAAGTTTGATGAT
TTCATTCAGTGTTGTGTTATGCTGAAAACTTTAACAGATGCATTCCGTAA
ACATGATACAAATCAAAATGGTGTCATACAAATCAATTATGAACAGGTTT
GTTTATGGCTTGACAGATCTTGTATCTTGAACAACTGAATTATAATGTTT
TTAACCTGCTTGTATTACATTACCTAACTAGCCAAAAAGATTTCAGTCTt
atcatggaggtaataaaaatatagatggggATACCACTCCcactattcta
ttgtattgtatcgttgatagcaaactgttgctttgttgctttgggaaaaa
gccattaattttgcttttgcTCTTGGGAAtacttgaaaatttgaataaaa
tcacgctacttttttaatttgttgttcattgtgtgatgacagttttgttg
ataaaacataagaaaactttgcaagaataagcacagaacctgacagaaca
tcgaatttgaaatgttcgCTGCTCAGGGAATGAGCAATCTTTCAACgata
ttctatcaaaattttgaggcagctgctattttagatctaaagatatttat
agGAAAGAACCTTCCACTAATAACAAAGAATTCGctaaatttgaagaagt
ttacctctcgaaagtttcccgataaaataaaaacttcttttaaaactata
aagaaattattactcgaaaaaaattcGCATTTTACCTTAAAATACAAGGT
TTTGTTGGAcagaataactttactttagttcttataatctatatcttgac
tgatttttgctatcaaggattggtaatcaaaggaggccaatttgaaagaa
atttctgaaGAGTTTAATGACTTCTCTggctattacagaaaagttattac
tccatctaacttttattacctctatggTCTTATAATACTTCACAGCCAAT
TTTCTGGGAGTCGGGGACACATCTCTTTTACTATTGTCAAAACTAAGACC
CCAGTTTCCATTTCTCCTATATGATATTGCtattaaaagttttcttatga
atatttttttaatcttatattatatacttttttcttttgcagTTCTTAGA
GATGGTATTGGATAACACATTGAGTGGGAtctaaacaattttcaaaaaag
gaggAATTTCTTTGAGAAGTTGTTGTGTGGTGCAAGGTTGTCAACTAAAA
CACTAGGATGACTGGTTGATTAAATTGGGGCTTTCAGCTTTAGATATGTC
ATATGCatatacatatttttaaaagaatttaccATGAAATTTGTATCAAT
GAGTCGTAGTATTTATAAGTTTAAactttttgtataatttttgttATCAT
CTTTCCCTTGTTTGCATTCATAATGCCTTGTTCAAATTTAAATCTTTATT
TGATAAAGATTGTCGTataatatttgaattttttttaaagtgactAACAA
CAAAAGCTTGACAAAATCTCTGTATGTCTGTTTTCTTTGTTTAATTTATG
AATGATTTTTTACTACTTCTTCTTATTATTGATATGATAAATTATTATAA
CCATGCGGGTGATGAGGGGAAATATATCAGTTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039344XLOC_039344Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062795-exon-scaffold_372-1491911889:222959..223343TCONS_00062795-exon-scaffold_372-1491911889:222959..223343Clytia hemisphaericaexon
TCONS_00062795-exon-scaffold_372-1510915933:222959..223343TCONS_00062795-exon-scaffold_372-1510915933:222959..223343Clytia hemisphaericaexon
TCONS_00062795-exon-scaffold_372-1575043694:222959..223343TCONS_00062795-exon-scaffold_372-1575043694:222959..223343Clytia hemisphaericaexon
TCONS_00062795-exon-scaffold_372-1491911889:224005..224132TCONS_00062795-exon-scaffold_372-1491911889:224005..224132Clytia hemisphaericaexon
TCONS_00062795-exon-scaffold_372-1510915933:224005..224132TCONS_00062795-exon-scaffold_372-1510915933:224005..224132Clytia hemisphaericaexon
TCONS_00062795-exon-scaffold_372-1575043694:224005..224132TCONS_00062795-exon-scaffold_372-1575043694:224005..224132Clytia hemisphaericaexon
TCONS_00062795-exon-scaffold_372-1491911889:224583..224657TCONS_00062795-exon-scaffold_372-1491911889:224583..224657Clytia hemisphaericaexon
TCONS_00062795-exon-scaffold_372-1510915933:224583..224657TCONS_00062795-exon-scaffold_372-1510915933:224583..224657Clytia hemisphaericaexon
TCONS_00062795-exon-scaffold_372-1575043694:224583..224657TCONS_00062795-exon-scaffold_372-1575043694:224583..224657Clytia hemisphaericaexon
TCONS_00062795-exon-scaffold_372-1491911889:225205..225279TCONS_00062795-exon-scaffold_372-1491911889:225205..225279Clytia hemisphaericaexon
TCONS_00062795-exon-scaffold_372-1510915933:225205..225279TCONS_00062795-exon-scaffold_372-1510915933:225205..225279Clytia hemisphaericaexon
TCONS_00062795-exon-scaffold_372-1575043694:225205..225279TCONS_00062795-exon-scaffold_372-1575043694:225205..225279Clytia hemisphaericaexon
TCONS_00062795-exon-scaffold_372-1491911889:225531..225754TCONS_00062795-exon-scaffold_372-1491911889:225531..225754Clytia hemisphaericaexon
TCONS_00062795-exon-scaffold_372-1510915933:225531..225754TCONS_00062795-exon-scaffold_372-1510915933:225531..225754Clytia hemisphaericaexon
TCONS_00062795-exon-scaffold_372-1575043694:225531..225754TCONS_00062795-exon-scaffold_372-1575043694:225531..225754Clytia hemisphaericaexon
TCONS_00062795-exon-scaffold_372-1491911889:226701..227193TCONS_00062795-exon-scaffold_372-1491911889:226701..227193Clytia hemisphaericaexon
TCONS_00062795-exon-scaffold_372-1510915933:226701..227193TCONS_00062795-exon-scaffold_372-1510915933:226701..227193Clytia hemisphaericaexon
TCONS_00062795-exon-scaffold_372-1575043694:226701..227193TCONS_00062795-exon-scaffold_372-1575043694:226701..227193Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_372supercontigscaffold_372:222959..227193 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
55.2011	60.0931	33.9264	30.4062	98.7517	66.4443	78.8379	87.3359	105.212	111.537	112.742	76.7556	69.0122	55.2852	51.3012	53.3555	40.2338	41.8445	33.0115	39.9027	35.5615	33.8197	38.7328	40.6142	68.1147	73.4192	49.7687	42.0305	41.6642	35.2202
Blast
[Close]
BLAST of TCONS_00062795 vs. Swiss-Prot (Human)
Match: PEF1 (Peflin OS=Homo sapiens GN=PEF1 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.312e-41
Identity = 72/131 (54.96%), Postives = 90/131 (68.70%), Query Frame = 2 
Query:  356 IDPTLWGWFQAVDQDGSGSITAEELQKALLNNNWSHFNAETCRLMIGMFDKNRSGTIDIYEFAALWKYVQDWKQCFDGFDRDRSGSIDEQELAQAFTSFGYRLTPQFCQLCV-RVFDRHNVRTMKFDDFIQ 745
            +DP  + WFQ+VD D SG I+ +EL++AL+N NWS FN ETC +MI MFDK +SG ID+Y F+ALWK++Q WK  F  +DRDRSGSI   EL QA +  GY L+PQF QL V R   R     M+ D FIQ
Sbjct:  115 VDPEAYSWFQSVDSDHSGYISMKELKQALVNCNWSSFNDETCLMMINMFDKTKSGRIDVYGFSALWKFIQQWKNLFQQYDRDRSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRSANPAMQLDRFIQ 245
The following BLAST results are available for this feature:
BLAST of TCONS_00062795 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PEF11.312e-4154.96Peflin OS=Homo sapiens GN=PEF1 PE=1 SV=1[more]
back to top