TCONS_00062674 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062674
Unique NameTCONS_00062674
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1089

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062674 ID=TCONS_00062674|Name=TCONS_00062674|organism=Clytia hemisphaerica|type=transcript|length=1089bp
AACTTTTTTATACTAATAATATAAACTTGTTAAAGTCtggattttaaact
tttattatagCCTCTGCCCTGACCCTTCTTTGCAGAGACTACTAATTTGC
ATGCTAAATAATCACGAAGTCGTGCGTTGCTAATGGTGGCCGATAAACAA
ATCTGcacaaaaagatcaaaaatcatcaaaatagtTGGCAGACAGTGGCA
GCCCTCACACCCAACCATACGCCAGACTTTTTACTTCACCAACCAAGCAC
TGGAGGGTCTTCCActtcaaagaaaaaacaacatacTTGTTTGAAACTTG
ACCAAACCAAGAACAATGTCATCGTCACAGTCGAAAAAAGATGCTTTAGA
AAAACTGGATAAAGATTATGATCAAACCATACCGGGAAACAGTGCCAAAA
CATCTGATTATTATACAGTTAAAAACATTCCAGACAGATTCAACAAACCA
GATTCGTTTAAAGGGTATGCCAAAAAGCAAGCACATCCAATGTATATGAC
TAGCGCAATGGAATACGGTAATCGTGAGCCAAGTGTCCACGTCATGCCTC
AGACGTTTCATGCCAAAAGTCAGAAATTCACCGAGCATCTTGGACAATGT
GGAATGTATAAAAACTATTCATTGAACACTTCTCTAGATAAGAATCCAGT
CTCCTCTCAACTCGatggtttattttgaaattgtaaatattttgttttaa
atgtatttttttaggtttttaaaaatgaatAGTCAAAGAATGAAGTAATA
AAGATAATTAGATGCGTGTGGAGCTTGATTACAGAAACACCTGTAGATGA
tatgcaacatttcaagcatTTTGTTTAGGTTTAGGCTGAATTCTAAGAAT
TGACTCGTacatttgataaattttataataATTGATTGTAAATAAAGATA
AATCTCATCCTTAATGAAAATCGATCGTCTTTGCTATTCTAAAAGTCCTT
CTAAAATAGACTGTGGTTACCCATGGTCAGTTAAATTTTAATTACTTATT
agtacttttgatagaatttgcaTCAGCTAAATCGTATCATTCAGCCTCGT
TCTCAACTTAAAAGAATGAATAAAATCGAACCATTTACC
Run BLAST on NCBI

transcript from alignment at scaffold_371:277542..285930+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062674 ID=TCONS_00062674|Name=TCONS_00062674|organism=Clytia hemisphaerica|type=transcript|length=8389bp|location=Sequence derived from alignment at scaffold_371:277542..285930+ (Clytia hemisphaerica)
AACTTTTTTATACTAATAATATAAACTTGTTAAAGTCtggattttaaact
tttattatagCCTCTGCCCTGACCCTTCTTTGCAGAGACTACTAATTTGC
ATGCTAAATAATCACGAAGTCGTGCGTTGCTAATGGTGGCCGATAAACAA
ATCTGcacaaaaagatcaaaaatcatcaaaatagtTGGCAGACAGTGGCA
GCCCTCACACCCAACCATACGCCAGACTTTTTACTTCACCAACCAAGCAC
TGGAGGGTCTTCCActtcaaagaaaaaacaacatacTTGTTTGAAACTTG
ACCAAACCAAGAACAATGTCATCGTCACAGTCGAAAAAAGATGCTTTAGA
AAAACTGGTAAGAGCaatatttcttattacaaaacGTTGGAATGTTGGTA
TTTATGATATTAGATTTCTGTTAACTATGACTTTGAGAGCAATTTGGGAA
AATAGCCAAAagtttattttgacatttttttgaaatggcAAGACCAAGAG
CAGTAAAAAGTGATAGTCCAGCCAGCTTCTTGGTTCAGTTGATTGTCAAT
TACGTTTCGATTGATCTACGATTATGTTAGATAAGTTTGattgcaataga
ccttttttcaaagaggacgtcctgtttgaataattatgtagtccagctat
aaaaacaatgatagagccatgcataattactgtatcatgcatattgtaat
aattatgcatggttttatcattgtttttctgctggactacataattattc
aacagggtggcctctttgaaaaaagatctATAGAcctcctttttttaaag
aggcagccatgttgaatagaccttttttcaaagaggccaccctgttgaat
aattatgtagtccagcagaaaaacaatgataaaaccatgcataattaata
taatatgcatgatacagtaattatgcatggctctatcattgtttttatgg
ctggactacatgattattcaacaggacgtcctctttgaaaaaaaggtCTN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaacaatgat
acagccatgcataatttttaaaatatacatgatacagtaattatgcatgg
ctgtatcattgtttttatgctggagtacataaatattcaacatggctgcc
tctttaaaaaaaggtctattacagtAAATTGGCTCCTTTTTAAAGCTTAG
CGTGGGTAGCCACCAATCAGCCAATACGCCATATTGGGGGGTCTGACCGG
TGCCCACTACTACTGGTCTGGTTGGTCAGGGGTGGTATCTGAGGGTACAT
GCCTGCATGGAAAAGAAGATTAGAGCAAGCGCATAAAAGTGCCGTACAAG
AGTGAATATATAATTGAATCAATCAAGCATTATAGTAGAATACAATCAGA
CTTTCCATCCCGTGATTTGCAAAACAGAAatgcgcgcattattttgatga
tcTCTCACCATTTGGTCTCTGGAGATAAACAAACCCGTgccgaccttggc
ttctgtgcaggaggccagggttcgattcccactcacggcagttcacttgg
caagtgaacgttccttcgcccgggtcaacccatgccatgtgaggggaatt
gggtagtcagttcaaggtgctgacaggaCGCTCagtagtaagcgtctata
gttgcgagaataggcctctaaagcctcctgcaactcaaccaaatagaata
gaaatagaaattccaTATGGGAAGTTggttttttaagcttttcttaagtt
ctatcaatcaaaaccccctcaaattttaataaaccCCTACTATATCTACA
ATCCAATTCTCAAAAGAACTTCTTCAAAAATCGTTCAAAGCTGCTGTAAA
AATTGGTAAAGCGGGGGGTCCTGATAACATCACCGCTAAGGACCTATCTT
TAAACCCGGNTGTGGATGAGTTTTTGACTTTGACCCAGAGCATTTATTCT
CACTGAATACTTCGTTATCAGGTAGCTAGTTAAATGGATGATAGAGACAG
CAAGCAGGATGATTATTTCGATGCTTTGGCATTATTCAATCCACTAGAGC
GTGAATGTATTCAAAATATAGAAAGTGAGGAAAATTTGATGGAAAGACTA
CAGGATCAGAAAGAAGCTGCCATTGAGCGGCTATGGTACACATTTCAAAG
TGCTGCATCGTCACTTGCACAGCTACATAAAGGCAAGAAGAAAAcatatt
gtttatattttttgagtgAATTTCAGCTTTCTGAAAGAATGAATGGATTT
GGAACCCTCTGTGATGCCTACACTGCCCGTACTGCCCGTATTATGTTTGT
ACGGGCTGTATGGGCGAGTCAACTTTATTTACAACCCGTACGTCCCATAC
ATTTGTACAGGCTGAATGGGCAAGTCAACCTAATTTACATCAAACCCTgt
attttcaaatataaaataaattgaCTACTATGCAGAATAGCCAAGCTTTT
TAAAAATCCAAAGATATGAATTGCATAGCTTAATTACCAAAAAATAGTGC
TTTGGGACACTGggattttctggaatggcccactGCGATTTTCagagtaa
tgtttaaaaatcagGGAAATCCTTAATTAATGTTTGTAACACTGTAAGTG
CTGTTCAGTTTCCTTAACTTTAAGGGACCCCATTTTCTGGCTCAATAAAA
CCTTTATCAGTCAGTTGTTTAAGagaaaaactgcaattattgctcttttc
ggaaattattgccgaaaacggcaattttttaacaatgaaatgctgaatca
gcagaaaaataaaaaagtaaacaaaatgccttttttgcaaataaaaattg
actttattattgaacacgtggtatttgacacccttgcgataagtaggccc
actgtgcctcatttagttttgttttcaactggtctTTGTTGGCAGTgtat
tgagcaacgaaaaattgaaaaatcacttttaaaaatccgaaaaacctttt
tctcagtgcaattttactattttcaaacaccactgacatctttgcccttt
aAAAAGGACAAcatattttgctgattcagcatttcatcgttgaaaaaatt
gcctttttatGGCAATAATTGcagaaaagagcaataattgcagtttatat
cttaaacacccgactgtttATGTGTACAATTTgaacgcaaaaaaaatttt
caatcaaggttgcttaaaattggaaaatttgggaaatgtttgattttaga
tccctcaaaatctCGCCATATCCCATGCAAGATACCTCAAAATCGGAAAC
AGAATAATTCTTGATTAGGAAGGAGTAGTTAGTTTTATTGCTCTGTATCG
GATAAagaaaaaatactatctttaaagatctttaatTTTTCTTCACAAGC
AAAATTGGATATTATTTCAATCCAATTAAAGATCGCTGTGGGATCAGAAA
ctgtcaaaaaccagctttttccaattttcatttagtCACAGGAACGAACA
CGTACCTTCaaatttcccagaaaaaaatGTGTGCTCCACCGTTACGTATA
TAAAAATGTGTTTGGGGGTAAACCAAACTGTAAACTATCTGTAATgcttg
gtctctggaggtaaacaaataGCTGTTTTTGCCTGTGTTCCCTTAGGGGA
GCTGTTTTTTAGCCAATTAATAAAACCCcctgaaattttaaaatgttctt
tctatacatgatattgtaataccaccctgaaaagtttttgccaatttttg
ctatcaaaagttagaagctggAAACCCCCTTTCCCTAATCTCTTGCAGGC
AAAAACGCTttcgtttacctcccaaacaattttattcaGGGAAGTTTGAA
TTACAGGAAAGATGTATTTGAATGGCatatcctgggtaatattcgattgt
gtttgacaatcgaatcgtAATCGTTCAACTGCGTTTGATTGTGCTCAATT
GATTTGGCGTTTGATTTGTTAAATTGACACTGTCTGGTCTATAGTGCATC
TAGAAATCATCAACAGGACCGACAGGACCTATCCAAATTATTTACCTGAA
GTTCCTGGTACATTTTTTATCCCCAGATGACGTCGTACAGGCCCAAGCTA
actaaaaaattttcatgagAAAACATGACCACATCATATACCAAATGAAG
GGTCTTTAAACATAGATTAAGGAAAGGTCATTAACCATAGCTGAGAGTTT
CTCTATAAGAAGTTATGAAGGTTTCTTTAACGTCTGCTACCTCTCTTTTT
ACCTGgtccgagaaatggcatttttaaggccaaaaatcgacgttttggac
gtttttcgatgacgtcagcattttcctaggagcattttcagaaGAAATCA
TTCCCATGATgactagatctcgagatattttggtttagatattgaaaatt
atcaatattttttgctgagtcagcagtttttcaccATATTTACCCACCTT
ACTAAAATGAATTATCTCAAGGTCTAGACACTAAAAcataacaaaccata
ccatttttggaaaCTACAAActcagggctatccagccgtgggaatgattt
ttctgaaaatgctcctaggaaaatgctgacgtcatcaaaaaacgtccaaa
acgtcaaattttggccttaaaaatgccatttctctgcaccaggtggtcga
aacttaacaaataaccccattttctttatctacttttcacactGAATCCA
TTGGTAGCaacagatatttgattttcagacctcGAAAAAACTTGATAAGT
TCTAGATCGATTTACTAAAAAttgattcactcgaaaacttaaggagattc
gaagggcaaatttttttgtcgattctgcaccctattaggagcataatatc
aaaaatttgccctgatctaaggggtgccctacaaagtgacacaattcact
acctcggccgctggtctagtTGACAATTTTATAAAgtgtgtatttttttt
aaaagaaggtGGAATACACCGTGTAAAGTTATTGCTCTAATAGTTTTTTC
TGTAAGATTTAAATAATTTCACTTTTAGGATAAAGATTATGATCAAACCA
TACCGGGAAACAGTGCCAAAACATCTGATTATTATACAGTTAAAAACATT
CCAGACAGATTCAACAAACCAGGTAtagcaatttttttctttttttttcc
cttaaccctttccgtgccgatgtcgtatatatccgacatgcaaattttca
ctgtacttgccaatgtcggatatatccgacatcaaagttttttacctaat
tgccgaggcctttaaaaaagagggagctctattgccgagaaatcagcttt
taggaaaatggctttcttatttgccaatgtcgtatatatccgacataaaa
aaatccaaatagtAATAGTGACAGTATATATTAAGTGCTCAAAAGATTTA
TTTCAGGTTTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTTAGTCTatcataaaatatatataaaacaaatgtcaaatacaaatg
tcaaacattggcaaataggaataaaatatccttgtcgtatatatacgaca
tgcggCAACAGGAGTTAAAATttgcatgtcgtatatatacgacatcggca
aatcaggttactaaaaaaaattacccctcggCAAATGGATTGAGGTACAA
AAACAAGGTAACGGCACGCAAAGGGTtaagaaaacctttttttttctctt
aaatattctttttcccttaaaaaaatgtttttgttaacTTTGTTAAATgt
attttctgtttgaattttacatttttgctaaaataactcttgaaatattt
catgagATTGCAGGTAAAAACTGTTTTCAGGTGTattattttttggcaaa
aatttggcaTCTTCGAGGCTATTTTCAGCTTATTTCAATTCACGGCTCAc
tgcaaaacttttcaaaacgcTGACTAAGAAAATAAATCCCAAAAGTTTGT
TAAATTAATCTGATTGGAGCATTAATACATTGATTTAGACTGAAGGTATA
TTATTTCTTGAGGTACAGTAGGGAATATTTTGTGTCACaaggtttttttt
aaatgaaataagTGAACTACTTTCAAACTCTTTTCTTACAGAGTTACTGC
CAAACATAGGGAATCCTGTCTTTACTTGTCCTATAACTGTCCAAGCTACT
AATGAAAAGAGTATTGAAAATAAAGCAGACCAGGAAGGTCAGTGAATTAT
TCAATACTTTTTGATAGAAGAAatccttttcattttctgaaagTCTCTAA
TTGGGTAATCTGGGGTATAGGCTCTGCAAAGaatgaattgatttttttat
taagaAGGTGGTTAATTTTCCGAAAGTATCATTTTGAAGCtgttataata
ataataacattattcttttcattttgatctcaaatattttgaacaATTCA
AAATAAACTAAGTATGAATTCAACATCATTTCACTTTATAATAAATGCCA
GTCGGGTACAAAAGAATGGTGATGCTCTGTCCTAGGAATATTGGTTTTTC
ATTAATCCTCTCGAAATCTGTCGAAATCTTAACAGaaaattttgtatgtt
tttttcTCATCAGATTCGTTTAAAGGGTATGCCAAAAAGCAAGCACATCC
AATGTATATGACTAGCGCAATGGAATACGGGTATGTGGCTTATAATTCTT
AGGTTTTGTTCTTGTCTAAATCTGATATTTTACTTATATATCACAATATA
TCTAAAATGTATTGTCAAAGTTAGATAAATCTCTGTATTTTTCAAACCCT
GTAAAGTTTTCTTAAGATTGGCGTACCCAAGTGTTTACATCACCGTTTAT
AGCATGTTTTGATAGTAAACTTTACTGTGTGTATTTGAATACGAATTTTA
CCAGTGGTCTCTTTTGCAATGAAGTAAACCTTAAGGCCGTACTCCACTtt
cgaaatgggcgacagtttttttcttaaccttttttacctgaagaaaaaat
tacgtcataaaaaagtttcgcgcgaacaaaaaaaagttgaaggaagttct
acttttttcatccgttacgtcaatttctaccaatggaattgcttcatttt
tcaaccgaccaatgaccttacaaaaacgtcaaaaagttttcgctcatgtc
gcgcgaaaggggagaccggcctttagtaTATTTGTACCATTTGACTCGTA
AGTTTATTTCTTTATTAATCCAATTTTAGTAATCGTGAGCCAAGTGTCCA
CGTCATGCCTCAGACGTTTCATGCCAAAAGTCAGAAATTCACCGAGCATC
TTGGACAATGTGGAATGTATAAAAACTATTCATTGAACACTTCTCTAGAT
AAGAATCCAGTCTCCTCTCAACTCGatggtttattttgaaattgtaaata
ttttgttttaaatgtatttttttaggtttttaaaaatgaatAGTCAAAGA
ATGAAGTAATAAAGATAATTAGATGCGTGTGGAGCTTGATTACAGAAACA
CCTGTAGATATTATATCGTCGCTGTAGAATAAAAAGGAGTTATGTCCATT
TTTGCTGTTTTGAGATAATCGCATTTTAAGTATTTCAATACTTGCAGTGG
AAGATTGAAGCACCTTTAAAGAGGCTATAGAGGTTTTTCTGTAAATTAAG
CCTATCCTTGGcaatataataattttttttcagtggatTATTGTTGCTAT
CTGGCCCTTGCAGGggccaactttttttttgttttccaaaATGGACATAA
GGCTCAATAAAAAGCCAAACTATTCAATTTTCTCACTACACAGTAAGGAA
AATTGTGAACAAAAAAAGACCTATGTCCAAATTTCATTGTGATTATTGTC
ATTGTGATTGGACATAACTCTTTCTTTTATTACATAGTCCATTCAATTAT
GGACATAAAGAAAATTTATCTCAagagcaaaaaaatattataaaaaaatg
aacaaaatttcttaaaatttattGCCTGGGGGAGccagaaaataataaaa
acaaaaaattcaaaaattggaCATAAGTCTTTTTTATTGTACAGCGACGA
tatgcaacatttcaagcatTTTGTTTAGGTTTAGGCTGAATTCTAAGAAT
TGACTCGTacatttgataaattttataataATTGATTGTAAATAAAGATA
AATCTCATCCTTAATGAAAATCGATCGTCTTTGCTATTCTAAAAGTCCTT
CTAAAATAGACTGTGGTTACCCATGGTCAGTTAAATTTTAATTACTTATT
agtacttttgatagaatttgcaTCAGCTAAATCGTATCATTCAGCCTCGT
TCTCAACTTAAAAGAATGAATAAAATCGAACCATTTACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039284XLOC_039284Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062674-exon-scaffold_371-1491911889:277542..277898TCONS_00062674-exon-scaffold_371-1491911889:277542..277898Clytia hemisphaericaexon
TCONS_00062674-exon-scaffold_371-1510915933:277542..277898TCONS_00062674-exon-scaffold_371-1510915933:277542..277898Clytia hemisphaericaexon
TCONS_00062674-exon-scaffold_371-1575043694:277542..277898TCONS_00062674-exon-scaffold_371-1575043694:277542..277898Clytia hemisphaericaexon
TCONS_00062674-exon-scaffold_371-1491911889:282570..282663TCONS_00062674-exon-scaffold_371-1491911889:282570..282663Clytia hemisphaericaexon
TCONS_00062674-exon-scaffold_371-1510915933:282570..282663TCONS_00062674-exon-scaffold_371-1510915933:282570..282663Clytia hemisphaericaexon
TCONS_00062674-exon-scaffold_371-1575043694:282570..282663TCONS_00062674-exon-scaffold_371-1575043694:282570..282663Clytia hemisphaericaexon
TCONS_00062674-exon-scaffold_371-1491911889:284205..284271TCONS_00062674-exon-scaffold_371-1491911889:284205..284271Clytia hemisphaericaexon
TCONS_00062674-exon-scaffold_371-1510915933:284205..284271TCONS_00062674-exon-scaffold_371-1510915933:284205..284271Clytia hemisphaericaexon
TCONS_00062674-exon-scaffold_371-1575043694:284205..284271TCONS_00062674-exon-scaffold_371-1575043694:284205..284271Clytia hemisphaericaexon
TCONS_00062674-exon-scaffold_371-1491911889:284821..285100TCONS_00062674-exon-scaffold_371-1491911889:284821..285100Clytia hemisphaericaexon
TCONS_00062674-exon-scaffold_371-1510915933:284821..285100TCONS_00062674-exon-scaffold_371-1510915933:284821..285100Clytia hemisphaericaexon
TCONS_00062674-exon-scaffold_371-1575043694:284821..285100TCONS_00062674-exon-scaffold_371-1575043694:284821..285100Clytia hemisphaericaexon
TCONS_00062674-exon-scaffold_371-1491911889:285640..285930TCONS_00062674-exon-scaffold_371-1491911889:285640..285930Clytia hemisphaericaexon
TCONS_00062674-exon-scaffold_371-1510915933:285640..285930TCONS_00062674-exon-scaffold_371-1510915933:285640..285930Clytia hemisphaericaexon
TCONS_00062674-exon-scaffold_371-1575043694:285640..285930TCONS_00062674-exon-scaffold_371-1575043694:285640..285930Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_371supercontigscaffold_371:277542..285930 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.2712	15.7803	43.8811	51.4303	243.607	170.394	77.737	79.8122	44.5554	58.1614	40.4721	32.2584	3.52655	2.54578	3.3521	3.92757	4.36691	5.33475	4.0467	5.1091	5.85497	7.08597	5.37191	6.83844	46.7186	38.6506	45.9634	57.426	4.7402	5.00412
Blast
[Close]
BLAST of TCONS_00062674 vs. Swiss-Prot (Human)
Match: CI116 (UPF0691 protein C9orf116 OS=Homo sapiens GN=C9orf116 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.634e-19
Identity = 39/87 (44.83%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:  397 KTSDYYTVK-NIPDRFNKPDSFKGYAKKQAHPMYMTSAMEYGNREPSVHVMPQTFHAKSQKFTEHLGQCGMYKNYSLNTSLDKNPVS 654
            +TSDYY V  ++P RFN P  F+GY  ++A  +Y TS   YG+R P+VH MP+ F+  S KF++ L   GM++N +LN  L+K+ V+
Sbjct:   23 RTSDYYRVSADLPGRFNNPGWFRGYRTQKAVSVYRTSNQAYGSRAPTVHEMPKVFYPNSNKFSQQLAAGGMFRNNTLNVYLEKSIVT 109
The following BLAST results are available for this feature:
BLAST of TCONS_00062674 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CI1169.634e-1944.83UPF0691 protein C9orf116 OS=Homo sapiens GN=C9orf1... [more]
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