TCONS_00062494 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062494
Unique NameTCONS_00062494
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length236

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062494 ID=TCONS_00062494|Name=TCONS_00062494|organism=Clytia hemisphaerica|type=transcript|length=236bp
TGTTCATTATGTATTATCATAGTTACTCATCAAAATCCGACGCCACTCGA
AAATATTGAAGAACAATATCGATGTTTGCCGCCGGTGGTAATTGAAAATT
CGAAATTGAAAAGcccaaaatcgaaaattgaatatttgaaGGGAAGTAAA
GAGACCTGGGATTCGATTgtatcaaagaaaagaaaattaaaccTCCAATT
GGATGTTCAGAAAAGTTGGGATTGTACACCAAGTAA
Run BLAST on NCBI

transcript from alignment at scaffold_366:383..941+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062494 ID=TCONS_00062494|Name=TCONS_00062494|organism=Clytia hemisphaerica|type=transcript|length=559bp|location=Sequence derived from alignment at scaffold_366:383..941+ (Clytia hemisphaerica)
TGTTCATTATGTATTATCATAGTTACTCATCAAAATCCGACGCCACTCGA
AAATATTGAAGAACAATATCGATGTTTGCCGCCGGTGGTAATTGAAAATT
CGAAATTGAAAAGcccaaaatcgaaaattgaatatttgaaGGTAGTGATA
TTATTTATAGTATTGATATTGACAAAAATATGACAGAAAGGTCAGGCGTC
AACTCAATCTTTCTCAGATAAAGTCGAAACAAAAGTCTTGAAAAACGAAT
TTATGGCAAGGGACGTACTAAAATTCATAGGTTTGCCTCAAACCGCCAAT
TTTaattccaaaattaaaatatgTATTAGCCACACTTAATCTTATGGTGA
ACAAAACAATTATTAGATATTTATAAGATAATTTTTGTAgattgtagatt
tttcagagatctttttctctttttacttTTCTCGTCGACATTTTGCTCAT
TACATTTATTACAGGGAAGTAAAGAGACCTGGGATTCGATTgtatcaaag
aaaagaaaattaaaccTCCAATTGGATGTTCAGAAAAGTTGGGATTGTAC
ACCAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039159XLOC_039159Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062494-exon-scaffold_366-1491911889:383..523TCONS_00062494-exon-scaffold_366-1491911889:383..523Clytia hemisphaericaexon
TCONS_00062494-exon-scaffold_366-1510915933:383..523TCONS_00062494-exon-scaffold_366-1510915933:383..523Clytia hemisphaericaexon
TCONS_00062494-exon-scaffold_366-1575043694:383..523TCONS_00062494-exon-scaffold_366-1575043694:383..523Clytia hemisphaericaexon
TCONS_00062494-exon-scaffold_366-1491911889:847..941TCONS_00062494-exon-scaffold_366-1491911889:847..941Clytia hemisphaericaexon
TCONS_00062494-exon-scaffold_366-1510915933:847..941TCONS_00062494-exon-scaffold_366-1510915933:847..941Clytia hemisphaericaexon
TCONS_00062494-exon-scaffold_366-1575043694:847..941TCONS_00062494-exon-scaffold_366-1575043694:847..941Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_366supercontigscaffold_366:383..941 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	24.5788	27.6004	28.3655	20.7825	12.1253	17.0217	11.6623	12.1384	5.74178	5.9629	0	0	0	0	0	0	0	0	0	0	6.17951	12.8685	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062494 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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