TCONS_00062315 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062315
Unique NameTCONS_00062315
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length838

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062315 ID=TCONS_00062315|Name=TCONS_00062315|organism=Clytia hemisphaerica|type=transcript|length=838bp
tgctatttcttttctatctAGTTATCCACAgttctttacaaaaaacaaag
tattcaacttcgaaaacattttttattccataGTATATAAAAGCAGAACA
ATTAAATTGAAACATGGGTGTTTCACAGCAATAATTTAAGAACATCGTTT
TTTTTGTCGCAAAATGTCCGTCCGACATGTCCGTCCGACATAAAAAAATG
ACTTGCCTGTCCAATCCAATAACTTTGATTAATCCATGGCGATAATAACC
TAATTTCTTCCATCCTCTAAACAATATACGAATCTTGATAAATCCCAAAA
ATTGAGTCGGTGCATCTATTTTTGAGATAGCAATGCAAGATTTCATCAAA
AAGTAGAAAATCAGTGTTTCTATCGTGTCCGTCCgacatgaaaaacattt
ttgcaaaaaaaaaatattcatgtgctgatatttctgttttctttttactt
tcataaaatatagCACAAGGCAAAACTTTGGCCTTAGTTACAGGTCCTAG
GTCCTTTGAGTTCACTTTTAATAGGTTGGCAAAGTATCGATTTGTCCGTC
CGACATAAAAACTAGTTTCGTAACAGACCCAGAGGCAGCCAGAGGAACCT
TTTTCCTCAGATGAGCATaaaatttcctattgaaatgctaatggggatag
aaattctattgttccaaggttaaaaacccagtggggatatggttttggag
tgcaatttttacacATGGACTGAATAATGATGCCAAACGACAGTTCCCAA
AAAAGGAAgaagctcgattttcgaaaaaaaaattatgggaaaattttggt
caaaatgtgCCTAAAAACAGGGTCTTTCGGATTTTgtg
Run BLAST on NCBI

transcript from alignment at scaffold_362:571205..572042

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062315 ID=TCONS_00062315|Name=TCONS_00062315|organism=Clytia hemisphaerica|type=transcript|length=838bp|location=Sequence derived from alignment at scaffold_362:571205..572042 (Clytia hemisphaerica)
cacAAAATCCGAAAGACCCTGTTTTTAGGcacattttgaccaaaattttc
ccataatttttttttcgaaaatcgagcttcTTCCTTTTTTGGGAACTGTC
GTTTGGCATCATTATTCAGTCCATgtgtaaaaattgcactccaaaaccat
atccccactgggtttttaaccttggaacaatagaatttctatccccatta
gcatttcaataggaaattttATGCTCATCTGAGGAAAAAGGTTCCTCTGG
CTGCCTCTGGGTCTGTTACGAAACTAGTTTTTATGTCGGACGGACAAATC
GATACTTTGCCAACCTATTAAAAGTGAACTCAAAGGACCTAGGACCTGTA
ACTAAGGCCAAAGTTTTGCCTTGTGctatattttatgaaagtaaaaagaa
aacagaaatatcagcacatgaatattttttttttgcaaaaatgtttttca
tgtcGGACGGACACGATAGAAACACTGATTTTCTACTTTTTGATGAAATC
TTGCATTGCTATCTCAAAAATAGATGCACCGACTCAATTTTTGGGATTTA
TCAAGATTCGTATATTGTTTAGAGGATGGAAGAAATTAGGTTATTATCGC
CATGGATTAATCAAAGTTATTGGATTGGACAGGCAAGTCATTTTTTTATG
TCGGACGGACATGTCGGACGGACATTTTGCGACAAAAAAAACGATGTTCT
TAAATTATTGCTGTGAAACACCCATGTTTCAATTTAATTGTTCTGCTTTT
ATATACtatggaataaaaaatgttttcgaagttgaatactttgttttttg
taaagaacTGTGGATAACTagatagaaaagaaatagca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039053XLOC_039053Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062315-exon-scaffold_362-1491911889:571205..572042TCONS_00062315-exon-scaffold_362-1491911889:571205..572042Clytia hemisphaericaexon
TCONS_00062315-exon-scaffold_362-1510915933:571205..572042TCONS_00062315-exon-scaffold_362-1510915933:571205..572042Clytia hemisphaericaexon
TCONS_00062315-exon-scaffold_362-1575043694:571205..572042TCONS_00062315-exon-scaffold_362-1575043694:571205..572042Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_362supercontigscaffold_362:571205..572042 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.37979	0.946176	1.91588	1.69303	1.75742	1.38244	1.8854	1.6313	0.66905	0.948565	0.742875	0.714643	1.99031	1.44314	1.5455	2.6195	0.8898	1.34537	0.480159	1.25506	0.600528	0.800444	0.323355	0.411878	0.908368	0.650459	1.3156	0.745394	0.939735	0.831113
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062315 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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