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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006132 ID=TCONS_00006132|Name=TCONS_00006132|organism=Clytia hemisphaerica|type=transcript|length=3774bp TAATAGTGAAACTGAAAAGACGAacgagaaaatcaaaaatcgtaAAGTCA CTCGTTTCGAGCCGGCGATTTACGAGAATTTGGATGAAGAGGATGAAGAA GGCGTAAATGCGACAGCTAATGTTCGTTTCGCTGAAGATGTTGTCGATAA CAGTGATATATCCTTAGATTCGAAAAGTAGCTGCCGCAAAAAATCAGTTT TCAGAAGACCGTCTGAGATAGACAGTTTATCGGAAAGTGAACCCGTCGTA TCATCAATATCATCGGACTCAGAAACAGATTCGCCATCAGCGCCGAAAGA CCCAATTTATGATAATATACAGCCTATTACTAAAATGGAATCAGAGGTGT CAAAATTTAAACCAAAGCCTACCCCTCCAGGCGGTCCGCGACGTTTGCAC CATAACAATTCATCTATTGATCATTCACTTAATCAAATGAAAGGCCGAAA CGCAATCAAACTACCCTCGTTGTACTCTTCACCATCCAAGGAGGTAGCCC TGCCACCAGTACCAAAGCCTGTCACCAGATCCCGATCTCCTGCAACCACC GGGGAGGCTGCTCGTACACCACCACCACCGATAGCAGCTAGTAGATCTCC CCCTCCGGTAGGAAGGAAGCCTCCTCCTGTAGGGAGGAAACCCACAGCTG CTACTAAGAAGCCTACACAAGGTACTCCAGCGGATACCTCCAACTTGAAA CCAGCAGATAATCTATACCTTAACATCACTGTACCTTCTTCTACACGTCT ACAAACTGGTTCCCCTGATGAACTAGCTTCGAAACGTTCATCCGCAGTTA TGAGAAAATACCCTTATCCGAGGGAAGCAGACCCTGCTATGGACGACTCT AACCAGCAGCCAGCACCACTTCCACCAATTCAAACGGAGCAGTCTGGATT TGCGAGACATCCACCTAGGAGGCAACCTCCTACCCCACCTACGGAGCCGA AGAAGCCTCCTAATAAGTACGTTGATAGTCCTCGACCTTCTTACGAAAAG CTGGAACCCCAACCACCTGAAGCTGAATCTAAAAAGAAACCTACATCAAC GGTGTTAGACATGGAGCAGGGTCCAGCTAACCTCCAATCTCCTTCCTTGC CACCTCGATTGGGAGTGGGATCCCAACATAGACCAAGTCCTAGACCAAGC CATATGGGACCATCACTAACCACAAGTGATGCCAGTACTATCGTTCACAG CCAGCAATCAACACCAGAATCGAGTGATGAATCATTTTACAAAGCCTTTG GTGGTGGTTCAAACCTACCAACAGGTGAACAACTACAGGACAATCTCTTA TTCTGCATGACTGAGAAACCATTCACAATTGAAGAGAAAATCCAGATGAT GGGGACTGGATCTAGTATCGGACAACAAGTCTTTCACCAGGGAGGCTCTG ATGAATCAAATAACTCGTTTAGTTCCTCTGGATCCGGTTCTGAAAACGAT TTCCCGAAAAATTTACGACACTTGAAACGTTattccgccattttgaaatc ttCATCCAGATATCCAAATCCTTCCAGATTATATGGTAACGATCAAGCTA TCCCTCAACATCAATCAACAATCCCAGCTAACCAGTCCAGTTACGGTCAA GCTATCCCTCAACATCAATCAACAATCCCAGCTAACCAGTCCAGTTACGG TCAAGCTATTCCTCAACACCAATCTAGAATCCCTGCTAATCAATCNCAAC AATCCCAGCTAACCAGTCCAGTTACGGTCAAGCTATCCCTCAACACCAAT CAACAATCCCAGCTAACCAGTCCAGTTACGGTCAAGCTATCCCTCAACAC CAATCAACAATCCCAGCTAACCAGTCCAGTTACGGTCAAGCTATTCCTCA ACACCAATCTAAAATCCCTGCTAATCAATCGGGATACGGTCGCCGTGCCT CTAAGAGCGCTGATAAATACAAAGACGTTCAAAGTCGCGTTGATCAGCGA CGTGTGGAGATTCAAGAAGCGATGCAGGTTCATCGTAGAATCTCAATCGT TCCGTCTGGATTAAGTCACGAAGAAGGTGTCCCTCAAGAAATGTCACGAG TTATTCCACCTCAAATCTCAATTAATGATGGCCGGCAACCGGCAATCAAT CCAGAGATCTCAGTGACCAAATACGGTCAGAGTCAAGAATCACCTATGAT ACAACCACAAATATCAGTGACTCGCTCAGGACGCCAGTATAAAGAACCGG TTACACAACCTGGGATCCCTAAAGAAGGTTCATTAACTATACCTATAGAC TCGTCACTTATCGGCGCTAATGAAAGACAAAGGCCACCTCATGGACCAAC AGGTCCAATGAAGCAACGCCGGGTTTCACATGTTATCCCAAAAGAAGGCT CATTAACTATACCTATGGAATCGTCACTTATCGGAACTGATGAAAGACAT AGGCCACCCCTTGGACCAACAGGTCCAATAAAGCAACGCCGGGTATCACA TGTTATCCCAAAAGAGGGTTCATTAACTATACCTATGGACTCGTCACTTA TCGGCGCTGATGAAAGACATAGGCCACCCCTAGGACCAACTGGTCCAATG AAGCAACGCCGGGTATCATATGCTATCCCACAAGAGGACTCATTGGCTAT CCCTGTGGACCAGTCATTGATAGGTGATGAAAGACGGATGCCAGTGCCGA TGCCGTATCGTAATAGAGCACTGTCTAGCTCACGAGATGTTGAAAAGAGT GGCTTAAGTGCTTGGAAAGCTGCCAATTTTGCTATTCGATACACACATCG ATCTAAAGCTCGTAAAGGACGAAGTAATAACCCGTATGGTACTCGTAGAA ATAGTTACAGACCAACTCCTAAACCAGCCCCACGTGACCCTCTTACTGTT AATTTGAATGCTGAAATGCAAGGAGTCATGACGCGCAGACAATCTCGTGC TGCAGCTGTGAGACGTTTAAGTCAGATTCAACAGCAATACCCTCAAGGGA ATACAGGACCCATGACCGAGCTGCAGAAGATCCAAAGAGAGGTCTCACAA GCTATCGCCGCCCAACAGTCCACACTCCGTGACCCGACACAAATGCAGGC CTCCCGACTGGGATACGGCCACGTTCAGCCACAATTATCTACTAGATTAG CACCGGTAGAAGCTGAGCCTATTCAACAACAAATATCTACAAGACTTTCA CCGGCCGTGCAAGCTGACCAAGATCTCGCAGCGTTAACCGAATACCGACG CAAGTCCGTCACTGAAAAAGACACACAATTCCAAAACGCCAAACGGCGTC TCTTCACAGAGGCGTCTAATTTCCAAGCGCCCGTACCTCCTACTGCTCCG CCCCGTGGTATTAGCGCCCTTAAAGATGATGTTAAGTCGCATATTCAGAG TGTAACAGCGCGCAATCGGGAATTGATCGGAAAACAAGTATCAATGGCCG AACAACCTGCACCACCACAAAGACGGAAATTATCAGAGTCTTTTAAGCAC AAAAAGGAAGGCGTCAACAACTTAATAAACCGATTTAACGTTACAATCGA GGAAGAGGGTAGCCGCCCACCAGCACCGCCACCAAAGTCAAAAAAACCCG TCCCTCCACCCGCCACTACTCGTAAACCTCAAATACCAACCAAAGTGAGA CCACCGCCTAAACCATTGGCTCCAAAACCGGCCCCATCGACCGCGCCGAA ACCAGGGCCTAAACCACGACCACAACCACGACCACGTTGAATGACCCttt aaattttgtgttttgattatattttattttactattcacttttgtaactt ttttattaattattctTTTGTTGT Run BLAST on NCBI transcript from alignment at sc0000063:361602..368047+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006132 ID=TCONS_00006132|Name=TCONS_00006132|organism=Clytia hemisphaerica|type=transcript|length=6446bp|location=Sequence derived from alignment at sc0000063:361602..368047+ (Clytia hemisphaerica) TAATAGTGAAACTGAAAAGACGAacgagaaaatcaaaaatcgtaAAGTCA
CTCGTAAGTATTCCTTGTGTCTTTTCCTCGACTGCATTCAATAGTCTATT
AAATTAAGTCCAGCAATGAAGACCAAGCATGAATGTGGTTTTAGAAAAGT
AAACCTTTAGGAtaaggctcttccagaaaatctttctacatgggggtgga
agatatattggatattttgtccggggatagtgaaaaatctgcaaaatttg
ctttgttttAGGGGCAACCTTGCTCTGATTaagggtgattttgaatgtcc
gggggtcaactgatgcttgtccgggggtgagATCCGTTGTCCGGTGGACA
AAATTCACTATATCTGGGGGTAAATTTCTTCCatcccccatattcaattt
ttttctggataaTATGTTGTTGAAGCACCATCTTACAACTCTTCAAAGAG
CTTTTGATATAAGGATGGAAGGAAAAACTTcataaaatgtaaaatgcagT
GAAATAGATAGAATCACAAAGTGTAAAAGAAGATCCGAAAAAATTCGAgc
gaaatatcaagaaaaatgaaaaactaagTTAGTTCGTTATTTCATGATCA
AATATAAAAtcaaagttctgtttcataatGGTCAATAGACTTGCACGATA
TGTTGCTATAAAATATTCACAGGACTAAAGTTTAcgaaaaaaggtcaaaa
tttggaaaaattggtccACTAAGATACATAAACAGATACAGATACATTAT
ACATCTTACTACTTAGGTTTCGAGCCGGCGATTTACGAGAATTTGGATGA
AGAGGATGAAGAAGGCGTAAATGCGACAGCTAATGTTCGTTTCGCTGAAG
ATGTTGTCGATAACAGTGATATATCCTTAGATTCGAAAAGTAGCTGCCGC
AAAAAATCAGGTAGGGGATCTTAGACGCATTACGGCATTAATTCGACCCT
TTTGTAATAGACAGGCTATGCTATCTACATTTTCTTAATCCTTGCACACa
aggttgtttcaacgttcacctaacgttcacgacgtctatataacgttaga
ttaacgttgaaacaacgttttgtgccagctgggtatcaAGTGCCAACTGT
ACTCTAGAtatcgatattttacgtggataacCCTGTATAGAGGAGACCAA
TCTAATTTGTTCATCTACGAGCCCCACCGAccctaattttgctaaaatca
aaaaaacattattgattttccactacaatatattttccACACTAGgcaag
accaatttaatttgttgttatacgggcccgaccgaccctaattttgctaa
aattaaaaaaataataatattgaatttccactataATATATTTtccacac
tagttatttgtaagaattaaatttgaataaagctgaaaattaattcaaga
aattgaagaatttaaaaaatcgagCATTCCATatactaaaattttattat
gatcttcatcggaGATaaataaaagtgaatttttgatccagatatttttt
gcaaatacctaaccaaccctgataaaagaaaaaaattattcttattttac
cgaccgaccgaccgatcgacccatatttttctaaccaTCTGCCCGtcgaa
caacaaattaaattggtctcaccTAATGTAACattttagacagtctttta
aTTTTTGTCATCCTCGGACGATCTATCTGTGAACTAAACGGAACATGGAA
GATTTAGGACCTTTGGTCTACcaaacgaagttaaagtcaattttgctatc
attttggtcattttattataatttcaaTGACGACAACTCCATACTAGTCT
ATTTATTTCGTAGATATTTTGTGATCTTATTTTGTAGATAGCGCATTTCC
actaaaaactatttttatttattNACAACTCCATACTAGTCTATTTATTT
CGTAGATATTTTGTGATCTTATTTTGTAGATAGCGCATTTCCactaaaaa
ctatttttatttattcatcaAATGTATAGTTTTCAGAAGACCGTCTGAGA
TAGACAGTTTATCGGAAAGTGAACCCGTCGTATCATCAATATCATCGGAC
TCAGAAACAGATTCGCCATCAGCGCCGAAAGACCCAATTTATGATAATAT
ACAGCCTATTACTAAAATGGAATCAGAGGTGTCAAAATTTAAACCAAAGC
CTACCCCTCCAGGCGGTCCGCGACGTTTGCACCATAACAATTCATCTATT
GATCATTCACTTAATCAAATGAAAGGCCGAAACGCAATCAAACTACCCTC
GTTGTACTCTTCACCATCCAAGGAGGTAGCCCTGCCACCAGTACCAAAGC
CTGTCACCAGATCCCGATCTCCTGCAACCACCGGGGAGGCTGCTCGTACA
CCACCACCACCGATAGCAGCTAGTAGATCTCCCCCTCCGGTAGGAAGGAA
GCCTCCTCCTGTAGGGAGGAAACCCACAGCTGCTACTAAGAAGCCTACAC
AAGGTACTCCAGCGGATACCTCCAACTTGAAACCAGCAGATAATCTATAC
CTTAACATCACTGTACCTTCTTCTACACGTCTACAAACTGGTTCCCCTGA
TGAACTAGCTTCGAAACGTTCATCCGCAGTTATGAGAAAATACCCTTATC
CGAGGGAAGCAGACCCTGCTATGGACGACTCTAACCAGCAGCCAGCACCA
CTTCCACCAATTCAAACGGAGCAGTCTGGATTTGCGAGACATCCACCTAG
GAGGCAACCTCCTACCCCACCTACGGAGCCGAAGAAGCCTCCTAATAAGT
ACGTTGATAGTCCTCGACCTTCTTACGAAAAGCTGGAACCCCAACCACCT
GAAGCTGAATCTAAAAAGAAACCTACATCAACGGTGTTAGACATGGAGCA
GGGTCCAGCTAACCTCCAATCTCCTTCCTTGCCACCTCGATTGGGAGTGG
GATCCCAACATAGACCAAGTCCTAGACCAAGCCATATGGGACCATCACTA
ACCACAAGTGATGCCAGTACTATCGTTCACAGCCAGCAATCAACACCAGA
ATCGAGTGATGAATCATTTTACAAAGCCTTTGGTGGTGGTTCAAACCTAC
CAACAGGTGAACAACTACAGGACAATCTCTTATTCTGCATGACTGAGAAA
CCATTCACAATTGAAGAGAAAATCCAGATGATGGGGACTGGATCTAGTAT
CGGACAACAAGTCTTTCACCAGGGAGGCTCTGATGAATCAAATAACTCGT
TTAGTTCCTCTGGATCCGGTTCTGAAAACGATTTCCCGAAAAATTTACGA
CACTTGAAACGTTattccgccattttgaaatcttCATCCAGATATCCAAA
TCCTTCCAGATTATATGGTAACGATCAAGCTATCCCTCAACATCAATCAA
CAATCCCAGCTAACCAGTCCAGTTACGGTCAAGCTATCCCTCAACATCAA
TCAACAATCCCAGCTAACCAGTCCAGTTACGGTCAAGCTATTCCTCAACA
CCAATCTAGAATCCCTGCTAATCAATCNCAACAATCCCAGCTAACCAGTC
CAGTTACGGTCAAGCTATCCCTCAACACCAATCAACAATCCCAGCTAACC
AGTCCAGTTACGGTCAAGCTATCCCTCAACACCAATCAACAATCCCAGCT
AACCAGTCCAGTTACGGTCAAGCTATTCCTCAACACCAATCTAAAATCCC
TGCTAATCAATCGGGATACGGTCGCCGTGCCTCTAAGAGCGCTGATAAAT
ACAAAGACGTTCAAAGTCGCGTTGATCAGCGACGTGTGGAGATTCAAGAA
GCGATGCAGGTTCATCGTAGAATCTCAATCGTTCCGTCTGGATTAAGTCA
CGAAGAAGGTGTCCCTCAAGAAATGTCACGAGTTATTCCACCTCAAATCT
CAATTAATGATGGCCGGCAACCGGCAATCAATCCAGAGATCTCAGTGACC
AAATACGGTCAGAGTCAAGAATCACCTATGATACAACCACAAATATCAGT
GACTCGCTCAGGACGCCAGTATAAAGAACCGGTTACACAACCTGGGATCC
CTAAAGAAGGTTCATTAACTATACCTATAGACTCGTCACTTATCGGCGCT
AATGAAAGACAAAGGCCACCTCATGGACCAACAGGTCCAATGAAGCAACG
CCGGGTTTCACATGTTATCCCAAAAGAAGGCTCATTAACTATACCTATGG
AATCGTCACTTATCGGAACTGATGAAAGACATAGGCCACCCCTTGGACCA
ACAGGTCCAATAAAGCAACGCCGGGTATCACATGTTATCCCAAAAGAGGG
TTCATTAACTATACCTATGGACTCGTCACTTATCGGCGCTGATGAAAGAC
ATAGGCCACCCCTAGGACCAACTGGTCCAATGAAGCAACGCCGGGTATCA
TATGCTATCCCACAAGAGGACTCATTGGCTATCCCTGTGGACCAGTCATT
GATAGGTGATGAAAGACGGATGCCAGTGCCGATGCCGTATCGTAATAGAG
CACTGTCTAGCTCACGAGATGTTGAAAAGAGTGGCTTAAGTGCTTGGAAA
GCTGCCAATTTTGCTATTCGATACACACATCGATCTAAAGCTCGTAAAGG
ACGAAGTAATAACCCGTATGGTACTCGTAGAAATAGTTACAGACCAACTC
CTAAACCAGCCCCACGTGACCCTCTTACTGTTAATTTGAATGCTGAAATG
CAAGGAGTCATGACGCGCAGACAATCTCGTGCTGCAGCTGTGAGACGTTT
AAGTCAGATTCAACAGCAATACCCTCAAGGGAATACAGGACCCATGACCG
AGCTGCAGAAGATCCAAAGAGAGGTCTCACAAGCTATCGCCGCCCAACAG
TCCACACTCCGTGACCCGACACAAATGCAGGCCTCCCGACTGGGATACGG
CCACGTTCAGCCACAATTATCTACTAGATTAGCACCGGTAGAAGCTGAGC
CTATTCAACAACAAATATCTACAAGACTTTCACCGGCCGTGCAAGCTGAC
CAAGATCTCGCAGCGTTAACCGAATACCGACGCAAGTCCGTCACTGAAAA
AGACACACAATTCCAAAACGCCAAACGGCGTCTCTTCACAGAGGCGTCTA
ATTTCCAAGCGCCCGTACCTCCTACTGCTCCGCCCCGTGGTATTAGCGCC
CTTAAAGATGATGTTAAGTCGCATATTCAGAGTGTAACAGCGCGCAATCG
GGAATTGATCGGAAAACAAGTATCAATGGCCGAACAACCTGCACCACCAC
AAAGACGGAAATTATCAGAGTCTTTTAAGGTAAGAATCATTTTTTGGcct
ttattttatttcatggGAAACTAAGTCTTCTAACTTGTATCCTGAAATGG
TaagatacacatttttttataagaacatcaacaaTTTTCGACTCTTCGGA
CTCTTTTAAGGTAAGGCTTCTTCTTTTGCTTCTGCacgtattttataaga
acaaactatataagaacataagacttcaatgacaaaaatgttaagaacaa
gttaagaacacccgaTTTCTGGATTAATCGGTTAATAGATACAATAACTC
ACAAAACTgtgaaaatgagaacatttttaggcaaaacactctaaggcttc
aaaaatttttgaattttcttatataaaaaaggtaTATTTTACTTTCATCG
GTAAAAAGTCTGTTAAATAAAATACATCATTCGTATTTTTTAATGTTACC
TTATGCCCCGGGGAGGGGCAAAATGACCGACGGTTATGTGCGggccctaa
gggtaccttttccaagatgtttaaaatgcactgtaagggtcggaaataCT
AAAGATGCACTGTAACGGTAGAAATTCcagaaaattcatgaaaaatctag
attttttgcccaaaaatgctattttaaccatttttttgTACGGAAAGGat
tgaaaatttggggaaaaatgcactctaagggtatgattttcaccgatttt
tgctgcactgtaagggtgcaattttaaaagcaaatttttggcccgcacat
accgtcagtctgCAAACCAAGTGCCCCCCCCTACCCCTTGGCcttctgct
gaatcaacatttTTGTTTACTTGCAGTTGAATTTGACTTCATAGAGTCTA
ATTGCAAACAAACAAGTCTTTTTAAAATGAGAAcgtactttaattttttt
ttccttcattCTCTTATAGCACAAAAAGGAAGGCGTCAACAACTTAATAA
ACCGATTTAACGTTACAATCGAGGAAGAGGGTAGCCGCCCACCAGCACCG
CCACCAAAGTCAAAAAAACCCGTCCCTCCACCCGCCACTACTCGTAAACC
TCAAATACCAACCAAAGTGAGACCACCGCCTAAACCATTGGCTCCAAAAC
CGGCCCCATCGACCGCGCCGAAACCAGGGCCTAAACCACGACCACAACCA
CGACCACGTTGAATGACCCtttaaattttgtgttttgattatattttatt
ttactattcacttttgtaacttttttattaattattctTTTGTTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00006132-exon-sc0000063-1491911889:361602..361654 | TCONS_00006132-exon-sc0000063-1491911889:361602..361654 | Clytia hemisphaerica | exon |
TCONS_00006132-exon-sc0000063-1510915933:361602..361654 | TCONS_00006132-exon-sc0000063-1510915933:361602..361654 | Clytia hemisphaerica | exon |
TCONS_00006132-exon-sc0000063-1575043694:361602..361654 | TCONS_00006132-exon-sc0000063-1575043694:361602..361654 | Clytia hemisphaerica | exon |
TCONS_00006132-exon-sc0000063-1491911889:362368..362511 | TCONS_00006132-exon-sc0000063-1491911889:362368..362511 | Clytia hemisphaerica | exon |
TCONS_00006132-exon-sc0000063-1510915933:362368..362511 | TCONS_00006132-exon-sc0000063-1510915933:362368..362511 | Clytia hemisphaerica | exon |
TCONS_00006132-exon-sc0000063-1575043694:362368..362511 | TCONS_00006132-exon-sc0000063-1575043694:362368..362511 | Clytia hemisphaerica | exon |
TCONS_00006132-exon-sc0000063-1491911889:363581..366830 | TCONS_00006132-exon-sc0000063-1491911889:363581..366830 | Clytia hemisphaerica | exon |
TCONS_00006132-exon-sc0000063-1510915933:363581..366830 | TCONS_00006132-exon-sc0000063-1510915933:363581..366830 | Clytia hemisphaerica | exon |
TCONS_00006132-exon-sc0000063-1575043694:363581..366830 | TCONS_00006132-exon-sc0000063-1575043694:363581..366830 | Clytia hemisphaerica | exon |
TCONS_00006132-exon-sc0000063-1491911889:367721..368047 | TCONS_00006132-exon-sc0000063-1491911889:367721..368047 | Clytia hemisphaerica | exon |
TCONS_00006132-exon-sc0000063-1510915933:367721..368047 | TCONS_00006132-exon-sc0000063-1510915933:367721..368047 | Clytia hemisphaerica | exon |
TCONS_00006132-exon-sc0000063-1575043694:367721..368047 | TCONS_00006132-exon-sc0000063-1575043694:367721..368047 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000063 | supercontig | sc0000063:361602..368047 + |
Blast
The following BLAST results are available for this feature:
|