TCONS_00006161 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006161
Unique NameTCONS_00006161
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1218

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006161 ID=TCONS_00006161|Name=TCONS_00006161|organism=Clytia hemisphaerica|type=transcript|length=1218bp
AATCAGGCTTTGTTGACAAATCACTTGttaaCGATGAAGCTAGCAACCAT
GCAGAAGACATGTCTcgTGCAAGAAGCCTACATAATCTTTTTGGgAATGA
TACTTCAGCAGAAGAAATTGCGGATTATTACAAAAGGAAATATGCGGACT
CTGAAAGAGAATATGAAGGAGATTACTCTGGCGATTATGAAGCCCCTGCA
GAAATCGAACAACAAAGTTTACTACCAGATGTCAAAGACCCCAACTTGTG
GATGGTCAGATGTCGTATGGGGGAAGAAAAACAAGTAGTGTTTATGTTGA
TGAGGAAATACATCTCCCTTTCATCAGGAGAAACTCCTTTACAAATCAAA
TCAGCGATTGCAGTTGAGGGGCTAAAAGGATACATTTATGTCGAAGCATT
CAAACAGAGTCACGTCAAGCAGGCTATTGAAGGTTTCGGAGCACTTCGTA
TTGGTATTTGGACACAACAGATGGTACCCATCAACGAAATGCCAGATGTG
TTGAAGGTCGTCAAAGATTTGGTGCAAATCAAAGCTAAAAGTTGGGTTCG
CATCAAACGTGGTATTTATAAGGATGATATTGCTCAGGTTGACTATGTGA
ATACAGCAAGGAATCAGGTGACGTTGAAAATCATCCCGAGGATAGACTAC
AGCATGATGCGTGGTGACATGCGCTCGCTCAGCGACGAAGCAGAAAAACG
TAAACGAAAAAGAAGACCTCCACAAAAACTCTTCGACAGAGATGCTATCA
AGAATATCGGTGGAGATTTATCAATGGATGGTGACTTTTACCTCTTCGAA
TACAATCGATATCGCCAAGGATTTTTGTACAAAACCATGGTAATGTCAGC
CATCATGTCGGAAGGTGTTAAACCAAGTCTCAGCGAATTGGAAAAATTTG
AGACATCCATTGATGATGCTGAGCTTGAATTGGGACGTGAACGAGGTCGC
GAGGAGGCCTCTCACTCCTTTGCAGCAGGAGACATGGTGAGAGTGTCCGA
AGGTGAATTGATCAACCTCAAAGGGAAAGTCATGACCATTGATGGCAATA
CAATCCTCATCCTTCCAAAGCATGAAGACTTAAAGGATCCATTAGAGTTT
CCAGCGCACGAGTTGGAGAAGTACTTCAAAGAAGGAGACCACGTTAAAGT
CATCAAAGGAAAGTACGAAGGAGATACCGGATTGATCGTTCgagtggaag
aaaatgtcatcGTACTTT
Run BLAST on NCBI

transcript from alignment at sc0000063:292186..301415-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006161 ID=TCONS_00006161|Name=TCONS_00006161|organism=Clytia hemisphaerica|type=transcript|length=9230bp|location=Sequence derived from alignment at sc0000063:292186..301415- (Clytia hemisphaerica)
AATCAGGCTTTGTTGACAAATCACTTGGTAAGTAATATCTGCTTTTTAAC
CAAGCATCGGGCCTTTCATTCATCACTGTCCATTGGTGTTGTAGGTCCAT
AGAATCAGGCTTTGTTGACAAATCACTTGGTAAATATCTGCTTTTTGACC
AAGCATCGGGCCTTTCATTAGCATGTTGCTGTCCATGGTGATGTATGTAC
ATGCCACTGTCTGCGGTACTGTATATCCCCTTTTGAAGAATCAATGCTTT
TTTAATTCAAGTTCGTTTCGGAAGAAACGCCCGTTGTACCTAATACAAAC
AAACAATCGACTATTGCTATGTTGCCAGTCCTTCATGCGATTCGGNTGAG
CCGCCTGACTGTGAACCCCTTAAAATTAATCTAAAGACCTCAAGACCTCA
AAGTCCTGGGTTACTAGGCTATCTAAGTAAAATATTGACTCAATCTATCT
AATTTGACCTCTGTACTGCTCACAAAATCACTTGAGTTTTAACCCATTCC
ATTTATTTCATTGATTAGAATTTTGGCTATGAATTTTTCTCTCTTCTTTC
TTTCAGATGTTGATGATGATTACGAGGACGAAGAAGATGAAGGGGAATCA
GGCTTTGTCGACAAATCACTTGGTAAGTAATATCTGCTTTTTGACCAAGC
ATCAGGCCTTTCATTCATCACTGTCCATGGTGTTGTAGGTCCATAGAATC
AGGCTTTGTTGACAAATCACTTGGTAAGTAATATCTGCTTTTTGACCAAG
CATCAGGCCTTTCATTCATCACTGTCCATGGTGTTGTAGGTCCTTAGAAT
CAGGCTTTGTTGACAAATCACTTGGTAATAATATCTGCTTTTTGACCAAG
CATCGGGCCTTTCATTCATCACTGTCCATGGTGTTGTAGGTCCATAGAAT
CAGGCTTTGTTGACAAATCACTTGGTAAATATCTGCTTTTTGACCAAGCA
TCGGGCCTTTCATTAGCATGTTGCTGTCCATGGTGATGTATGTACATGCC
ACTGTCTGCGGTACTGTATGTCCCCTTTTGAAGAATCAATGCTTTTTCAA
TTCAAGTTCGTTTCGGAAGAAACGCCCGTTGTACCTAATACAAACAAACA
ATCGACTATTGCTATGTTGCCAGTCCTTCATGCGATTCGGCTTCTTGTTA
TATTGTTAAGTTGTATAAACTTTCAACTTATCTGTTCGTACATCCTGCTG
CTACTTAATCTGCCATTTAAAATGCTGTTTTCAAAATTCCACTCCGTTAA
TGGTAAAATTTTAAAGGTACAGGGCGTTTGTGTGTGTCCTCATATATTTT
TTTGATTTTACTTGTGACCCTGCCCCCCCCCCTGAGATGTAATCATTGTA
CTAGTCATAACACTGTGCGTTTTAAAATGGCTTGATAATAAAAAAGAAGT
ATGCTATGCACAAGTAAAATGCAATGTTGCAACTCTTCCAGAAATCTGTC
TCGTTGAGATTCTTCACTATGAGTTTGTCTTTGGAAGAAAAAATGTCTGA
TTTTATGGAAATTCTTTCTAGATTAACCAGAAATTGCTGCAACACTGAAA
ATAAACTTATTCTAATATTTTGTTTTAGTTAACGATGAAGCTAGCAACCA
TGCAGAAGACATGTCTGTAAGTCGATAATTTTTGATAATATGGTAGCAGA
GCTATGGGACGAAAGAATTTATCTCTAAAAACTGGAATAGACAAATATTA
TGCATTTTTGAATTGTGCAGTAGGCTTCCCTCCCCAGAGCTGTGGCTACC
ACATTGAAACAGTTTTTCTAACACAATGACTACCGTCAATGGCTACTAAT
CTACCCTTTTTTTATCGAGGTACTTAAGGGACTACTGCATAAAAAATTAA
ACTTGATCCATGAATAGCTATGATGAAAAACATTTGAAAAATTCAAGCCA
ATGTTTGTTGTCAACAGTGATTCTATCTTGACCCTTTTGGATAATTCAAA
GAAATTTTCTTCTTTTTTAGCGTGCAAGAAGCCTACATAATCTTTTTGGG
TGAGTGGTAATTATTTTTAAAAAAGTGAAGTAAAATCTTTTTTTCTTTTC
AAGCGACAAAATGGTTATTTACTTTGAATACTTTCCATCTTTTACTGTTT
TCAAAAGAAAGCAATAATCTGTAATAATTATATACTACGCTTTATAATTT
TCGTTTCTTTTCTTTTTTCTCAGGAATGATACTTCAGCAGAAGAAATTGC
GGATTATTACAAAAGGAAATATGCGGACTCTGAAAGGTAATTTTCTACAA
AACTTAACTGAAGGCCGGTCTCTTCAACTTCCTTCAACCTTTTTTTTTGT
TTGCGCGAAACTTTTTTATGACATAATCTTTTTTTCAGGCAAAAAAGGTT
AAGAAAAAAACTGTCACCCATTTCGCGTGAAAGTTGAGACCGGCCTTGAA
GTGGAACATATAGGAGAAGCGTGGATTTTTAATGAACTCGTTTGGTTTCT
GATGGGGTCTCTTCAGACCACTAGGTTGTCTCTCCTCAAAATACTAGATA
GTTTTGTACTAAGTAACCCTATAGTAACTTTCTATAATTTGTATCTTTAA
AAGCATAATGGGTATGGAGAATATTAGGGAGAATACAATTGAGTATCTAT
AACCCCGAACCTCTTCAAGTCGAATGTCTCAAATAAGTTATGTGGCTTCT
TTTGCTACCAAACCCTTGTAAAGAGACCCAATTGTATTATCACAGAATAT
TTGCGACTGCAGTCAAGTTTTCTTTTGCCCAGGGTAGAGTAAGGGACCAC
CCTTTTCCCTGGATTTCTCCACTTATCCTTGACCCATCTCTATAGTCGCT
AAGCATTAAGCAGAGAGTCATCAACTATTAATTTGGATTGGGGTTCTTGA
TACTCGCAACCTTGCGCATGGTAGCCGGATGCTCTAAGTAGTAAGTCTGC
GACCCCAAGGCTTCTCTTTCGATAGCTATCTACCCAAAGGTAGGGGAGGG
CGCCTCTCTTTTTTCCTGGATTTCTCCACTTACACCCATGATCCTTCTCT
TAATTGCTGAGCATCAAGCAGCGAGGTATCAAGTACCATTTAGGAAATCT
TTGGTATGACACGGCTGGGAGTTGAACCTACAACCTTGCGCACCGTAGCC
GGGTGCTCTACCACTGCACTACGGTCGCTCTACCTTCCTGCCGCCCTTAC
GACGTATTGTTATACTTTTCTAACATGCAAATTTTTTATATTTTGTTTAG
AGAATATGAAGGAGATTACTCTGGCGATTATGAAGCCCCTGCAGAAATCG
AACAACAAAGTTTACTACCAGATGTCAAGTAAGTTTGTTGAGATAATAGA
TTTATAAAGCCCGAAGGGCTTGAAGTCGTGCTTTGGCTGAAAAGTGTGCC
GAGGTTAGATAGGAAATCCTACCAAGGTCACGTGACATTACAATAGAATT
TCAGCGCTTGACCAATCAGAAGCTTCTTGGGTTTTCGAAAACAATAGCAA
CAATATCTTTTCCGATATTCAATTTTTTTGTCTGCAATGGCTTAAAGCAC
GACATCGGAAGTCGGAATAACAGAGTTTTTTGCCAGATTCATGTCAAGTA
AGTTTGCATTGCCTGNATTGGGGTTCTTGATACTCGCAACCTTGCGCATG
GTAGCCGGATGCTCTAAGTAGTAAGTCTGCGACCCCAAGGCTTCTCTTTC
GATAGCTATCTACCCAAAGGTAGGGGAGGGCGCCTCTCTTTTTTCCTGGA
TTTCTCCACTTACACCCATGATCCTTCTCTTAATTGCTGAGCATCAAGCA
GCGAGGTATCAAGTACCATTTAGGAAATCTTTGGTATGACACGGCTGGGA
GTTGAACCTACAACCTTGCGCACCGTAGCCGGGTGCTCTACCACTGCACT
ACGGTCGCTCTACCTTCCTGCCGCCCTTACGACGTATTGTTATACTTTTC
TAACATGCAAATTTTTTATATTTTGTTTAGAGAATATGAAGGAGATTACT
CTGGCGATTATGAAGCCCCTGCAGAAATCGAACAACAAAGTTTACTACCA
GATGTCAAGTAAGTTTGTTGAGATAATAGATTTATAAAGCCCGAAGGGCT
TGAAGTCGTGCTTTGGCTGAAAAGTGTGCCAAGGTTAGATAGGAAATCCT
ACCAAGGTCACGTGACATTACAATAGAATTTGAGCGCTTGACCAATCAGG
CGATCTTGGGTTTTCGAAAACAATAGCAACAATATCTTTTCCGATATTCA
ATTTTTTTGTCTGCAATGGCTTAAAGCACGACATCGGAAGTCGGAATAAC
AGAGTTTTTTGCCAGATTCATGTCAAGTAAGTTTGCATTGCCTGCTGTAA
GTTTTTAAAATGTAATGCTTGGTAAATCTGCAGTATATCAAGTTTGGGGT
ATAATGTGCTATAAGTTTGGAACGAGAATTTTTTTATCAGATATCAAAAG
CTCCCATTCTTGAGATGCCATTGTTCTAAGCTTCACCATTGGAACAAAGG
ATGTCAGCGATTTCTGTGCTCACTTCGTTTCTGATTTTCTGAAGTCTCGA
TACTGAAAGGTTGCTTTAGTAAGCTCTATCAATTCCTATAAAAATGATTT
CATTTTTATTTTTGCCACAGAGACCCCAACTTGTGGATGGTCAGATGTCG
TATGGGGGAAGAAAAACAAGTAGTGTTTATGTTGATGAGGAAATACATCT
CCCTTTCATCAGGAGAAACTGTGAGTGATTACCATTTGACGCCACTCTGC
CACCGCCAACGCCCCCAAAAAAACCTCTTCTTTTCATCCAGTATCCGATC
ACTATAATAAAGACTGGAATTCATGATATGCACCACTGGAATGACTTCAC
GAAATTATGCAACTTTTCTGTTTTTGTTCCACCCAATACGTCACTTTTTC
TATTGTTTAAGTGAGGTATTGGGTGGAAAATTTTCAAAGTTCTCAGAAGA
CTCTCCAGTGGTGCATATATCATGAATTCTCATATTTTTAGTCAAGTCAC
GAGTAATTTACGGTTAATGCATCAGCACTTGTGCCCTGGGAACAAAGGGA
ATATTTTATCGACCACACCCTGTCTCGACTCGAGGAAAATTCTTTCCAAT
AAAAAATATCTACATTTTTCGATTTTGCCCCTTCATATAGGGATCACTAT
ACTGATTTGATTCTTGCTCTAACCTTCTAGCCTTTACAAATCAAATCAGC
GATTGCAGTTGAGGGGCTAAAAGGATACATTTATGTCGAAGCATTCAAAC
AGAGTCACGTCAAGCAGGTTTGGGAAATTTACTTGGCACTTACATTATTG
GAACTAATTTTCGCGGAATTAATTTTAGCGTTTTTTAAACCGGCGAAAAA
CAATTTTTTTTCAATTTTATCGAAAAAATTGAAAAATCCCTTGAAAAATG
AAAGAAACTTGTCCAAAAGAGGGCAAAACCGCGAAAATTAAAATCCGCAA
AAATTAGTTCCAATAAGGTATTTTCATGCTTGAAAATGATTCTCTGGAAT
TTTTTTAGCCTTTGCTATTATCCCTACTATCCAACAGGAAATAGAATTGC
TAAACAAACTCTTATTGATTAAAATGACCTAACATATTCATGATATGCAC
CATTGCAATGTCTTCTGACATTACATCATGGACCTAGCAGCAGATTGGTT
GTAAGTGACGTAAAATTAATCAATACGTCACTTTCAACCAATCAGCTGTT
GGGTCCGTGATGCATTTCATGAATTATCAGTAATTAGAGAATGATAATGA
TTTTAGAAGTTAATCAGTATGTGTTAATGTGGTGCTTATCACCCTCCGTT
CTTTACTCTTCACCAGGCTATTGAAGGTTTCGGAGCACTTCGTATTGGTA
TTTGGACACAACAGATGGTACCCATCAACGAAATGCCAGATGTGTTGAAG
GTCGTCAAAGATTTGGTGCAAATCAAAGCTAAAAGTTGGGTTCGCATCAA
ACGTGGTATTTATAAGGATGATATTGCTCAGGTATGAGAAAATGTTCTGT
ATAGGTATCACGGATATCTTATATAAAGATATATCCTATATTGTATATCT
ATATAAGACGATGTAGCTCCATCTAGTGTTTTCTTTATTATGTGCGATAT
TGTGCAGGGTCTAAAATTCTTAAGAGGCTTCCACCGAAAATATCTCAAAC
GTGGCCTGTAACTGCTATGAAAGACTACGCAATGGCTCTGTTAATAACTT
TTCTTCTGAACTGTAATTAGAACATTTATTACATCTAATTCTAGGTTGAC
TATGTGAATACAGCAAGGAATCAGGTGAGAAACAGTCTTAGTAAAAATAA
GCTCTCTAGCGTAAATCGAACGTTTGCTTCCATAATGGCGGAAGTTACGT
AACTACTTAATAAAACCTGAAAACCTACATACGTCATATATCGGAAGCTT
TTGTCTGTGCTTTTCTTTGTCTTGTCTGACTATGCACAATGATTTGATAT
GTATGATAGGACCTACTTGGAATCGGAAGACTCAGTATCATACTTGTCTA
TCCTTTATCAATTACCAAATATAACTATATTATTTCATGGTTTTAGGTGA
CGTTGAAAATCATCCCGAGGATAGACTACAGCATGATGCGTGGTGACATG
CGCTCGCTCAGCGTAAGTATGGATTCCCACCTTCACCCCGCCCAAAAAAA
AAAATCCAAAATAAAAAGCTTATGGTTGGTTGATTCATTTTTTCTAATTT
TTTGTAAGCTCTTGAATGTGACAGACACCGATTTTCTTAAAAAGATTAGT
CCCATTAAAACAAATTTCACTAGTTTCAAAATTAAGAAATTTTTCATTTT
CTCTATAGGACGAAGCAGAAAAACGTAAACGAAAAAGAAGACCTCCACAA
AAACTCTTCGACAGAGATGCTATCAAGTAATGAAATTTATTTTGGTGTAG
TAATGTCATATATAAAGTCCATTCTCTTTAAGTATGTACCCTGCTAGCAT
GTGGAAACCACTCCGATGGAGAAAGTCTAATTACACTGCTATAGTTTCTA
CATTATGGCGGCGATAAAGCGAATGTAATAAAAGCGAAAAAATACCTTTA
CTTGTCCACGAAAAAGAAAAAAAACTTGTATGTATAGTATAGTCAAGTAT
TGTTCCCTATTAATCCCAGCTTCCTAAAAATGACTTAGCCTCAGGAAAAA
TTTTCACCCTGCGACAAGATTTTCGAAATGTAAAAGAAAGGACTGTGGTT
TTGGATGGTAGCCTTGGGGGACACTCAAGGTAAATGACCTACCGTACGTG
CAGTCCTTATGAGCTGCAGCTTCTCAAAGTGCACTGTAAGGGTCTAATTC
AGCAAAGATGAGAAAGAGTGCACTCTAAGGGTGTGAAATTTCGAAAATCT
GACCAAATAAGTGTTAAAAAATAGNAGAGTGCACTCTAAGGGTGTAAAAT
AGCGAATATCTGGCCAAATAAGTGGTAAAAAAATAAGTGGTTTCAAATCG
TACATTGGAGATTCGACTCTAACTTCTGGCCAAACCTATTGTTCCAGACA
ATTGTATGTTTCATATTTTTTTAACAGGAATATCGGTGGAGATTTATCAA
TGGATGGTGACTTTTACCTCTTCGAATACAATCGATATCGCCAAGGATTT
TTGTACAAAACCATGGTAATGTCAGCCATCATGTCGGAAGGTGTTAAACC
AAGTCTCAGCGAATTGGAAAAATTTGAGACATCCATTGATGATGCTGAGC
TTGAATGTGAGTTTATAGACCTTATCGGAGTTTTTGATTTTTCTAAAAAA
GCGATGCATTGTGGGATTGTCTCGAGTGTATCACAATAGAATTCCCTCGA
GGAACTCCTAAGAGATTTCTATTGTAATACACTCGAAACAATCCCACAAT
GCATCGCTTTTTTAGAAAAATCCAAAACTCTGATAAGATCTATTTTCGCT
TATCTCCCCCCTTTATTTTAAACAGTGATCGAGGTCTTTCCGTCTAAATG
AAATACTCTGGAGAACCTAATAAGCGCCCCCTCCTTCCTTCGTTAAAATT
AATTTTTCGAAAATTTTCCACCCAGGACATTCTTATTCCAAGCCCCGCTT
TTTTATCTCCCTAATATTTAATTATCTCCTTCACTGAAAATTGCCATCCT
GAATGGCATGGAACTTTGAGTATGAAATTAAATTAAAACGTTTTCTTTAC
TCAAACTAGTAATTATCTCATTAATATTTTTTCCAGTGGAACGTGAACGA
GGTCGCGAGGAGGCATCTTACTCATTTACGTCAGGAGGACAAATGACTAC
GAATTACATTTTTTATCTCCCTAATATCTAATTATCTCTTTAATATTTCT
TCCAGTGGGACGTGAACGAGGTCGCGAGGAGGCCTCTCACTCCTTTGCAG
CAGGAGACATGGTGAGAGTGTCCGAAGGTGAATTGATCAACCTCAAAGGG
AAAGTCATGACCATTGATGGCAATACAATCCTCATCCTTCCAAAGCATGA
AGACTTAAAGGTATGATGGTTTGGTGGAAGANATACAATCCTCATCCTTC
CAAAGCATGAAGATTTAAAGGTACGATGGTTTGGTGGAAGAGTTTTACTG
GGCTACAGTATTCTATGAATTAACTCTTATTATTCACAATGTACAAAGTT
CTTCTCAGACGGACTTCCGTCTCAATGAAGTATATATTTAAAGACTTTTC
CGTCTCATATTCTGCATAATGCACCAAAATTTCAAGAATACGCGCCACTT
TGTTGTTTAAAATCCATTGTTCGTCTTTGAGTACCTTGCTTTGAGTACTG
TTGGAAAGTTTTTTCGTATTTTTCATTGTCTGAATTAACTCTATTTTTGA
TGACTGACTTTCTGTCCTACCTATTAAAGTTGTTAGAGTAGGCAAAAAAC
ATGCAGAAGGTTGTCTGTTGAATTCTTTGCTTGGCAAAGAGATTGAATCA
GTCATTCTTATAGGCTATTTCACAGTCGCAAAGCGTAATGGGTAATCAGG
ACCACTGCACGCTAAGACGACTTACTATTGTTATTGGTCCAAAGTTTTGA
AAGATTTTGAAGATTTTTACGTCTAGCCAACAGAAAGCCGTTTTGGAGGT
GCATTCAGTCCTAATTACCCATGACCCATTTCGACTGTAAAATGGCCTAT
TGGCATCAAAAGAGGGCAACGTATTGACTTATAATTCTCTTTTTTAGGAT
CCATTAGAGTTTCCAGCGCACGAGTTGGAGAAGTACTTCAAAGAAGGAGA
CCACGTTAAAGTCATCAAAGGAAAGTACGAAGGAGATACCGGATTGATCG
TTCGAGTGGAAGAAAATGTCATCGTACTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003511XLOC_003511Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006161-exon-sc0000063-1575043694:301389..301415TCONS_00006161-exon-sc0000063-1575043694:301389..301415Clytia hemisphaericaexon
TCONS_00006161-exon-sc0000063-1575043694:299800..299837TCONS_00006161-exon-sc0000063-1575043694:299800..299837Clytia hemisphaericaexon
TCONS_00006161-exon-sc0000063-1575043694:299417..299445TCONS_00006161-exon-sc0000063-1575043694:299417..299445Clytia hemisphaericaexon
TCONS_00006161-exon-sc0000063-1575043694:299180..299242TCONS_00006161-exon-sc0000063-1575043694:299180..299242Clytia hemisphaericaexon
TCONS_00006161-exon-sc0000063-1575043694:297408..297485TCONS_00006161-exon-sc0000063-1575043694:297408..297485Clytia hemisphaericaexon
TCONS_00006161-exon-sc0000063-1575043694:296746..296845TCONS_00006161-exon-sc0000063-1575043694:296746..296845Clytia hemisphaericaexon
TCONS_00006161-exon-sc0000063-1575043694:296199..296285TCONS_00006161-exon-sc0000063-1575043694:296199..296285Clytia hemisphaericaexon
TCONS_00006161-exon-sc0000063-1575043694:295485..295649TCONS_00006161-exon-sc0000063-1575043694:295485..295649Clytia hemisphaericaexon
TCONS_00006161-exon-sc0000063-1575043694:295192..295221TCONS_00006161-exon-sc0000063-1575043694:295192..295221Clytia hemisphaericaexon
TCONS_00006161-exon-sc0000063-1575043694:294854..294919TCONS_00006161-exon-sc0000063-1575043694:294854..294919Clytia hemisphaericaexon
TCONS_00006161-exon-sc0000063-1575043694:294590..294657TCONS_00006161-exon-sc0000063-1575043694:294590..294657Clytia hemisphaericaexon
TCONS_00006161-exon-sc0000063-1575043694:293760..293938TCONS_00006161-exon-sc0000063-1575043694:293760..293938Clytia hemisphaericaexon
TCONS_00006161-exon-sc0000063-1575043694:293006..293160TCONS_00006161-exon-sc0000063-1575043694:293006..293160Clytia hemisphaericaexon
TCONS_00006161-exon-sc0000063-1575043694:292186..292318TCONS_00006161-exon-sc0000063-1575043694:292186..292318Clytia hemisphaericaexon
TCONS_00006161-exon-sc0000063-1510915933:301389..301415TCONS_00006161-exon-sc0000063-1510915933:301389..301415Clytia hemisphaericaexon
TCONS_00006161-exon-sc0000063-1510915933:299800..299837TCONS_00006161-exon-sc0000063-1510915933:299800..299837Clytia hemisphaericaexon
TCONS_00006161-exon-sc0000063-1510915933:299417..299445TCONS_00006161-exon-sc0000063-1510915933:299417..299445Clytia hemisphaericaexon
TCONS_00006161-exon-sc0000063-1510915933:299180..299242TCONS_00006161-exon-sc0000063-1510915933:299180..299242Clytia hemisphaericaexon
TCONS_00006161-exon-sc0000063-1510915933:297408..297485TCONS_00006161-exon-sc0000063-1510915933:297408..297485Clytia hemisphaericaexon
TCONS_00006161-exon-sc0000063-1510915933:296746..296845TCONS_00006161-exon-sc0000063-1510915933:296746..296845Clytia hemisphaericaexon
TCONS_00006161-exon-sc0000063-1510915933:296199..296285TCONS_00006161-exon-sc0000063-1510915933:296199..296285Clytia hemisphaericaexon
TCONS_00006161-exon-sc0000063-1510915933:295485..295649TCONS_00006161-exon-sc0000063-1510915933:295485..295649Clytia hemisphaericaexon
TCONS_00006161-exon-sc0000063-1510915933:295192..295221TCONS_00006161-exon-sc0000063-1510915933:295192..295221Clytia hemisphaericaexon
TCONS_00006161-exon-sc0000063-1510915933:294854..294919TCONS_00006161-exon-sc0000063-1510915933:294854..294919Clytia hemisphaericaexon
TCONS_00006161-exon-sc0000063-1510915933:294590..294657TCONS_00006161-exon-sc0000063-1510915933:294590..294657Clytia hemisphaericaexon
TCONS_00006161-exon-sc0000063-1510915933:293760..293938TCONS_00006161-exon-sc0000063-1510915933:293760..293938Clytia hemisphaericaexon
TCONS_00006161-exon-sc0000063-1510915933:293006..293160TCONS_00006161-exon-sc0000063-1510915933:293006..293160Clytia hemisphaericaexon
TCONS_00006161-exon-sc0000063-1510915933:292186..292318TCONS_00006161-exon-sc0000063-1510915933:292186..292318Clytia hemisphaericaexon
TCONS_00006161-exon-sc0000063-1491911889:301389..301415TCONS_00006161-exon-sc0000063-1491911889:301389..301415Clytia hemisphaericaexon
TCONS_00006161-exon-sc0000063-1491911889:299800..299837TCONS_00006161-exon-sc0000063-1491911889:299800..299837Clytia hemisphaericaexon
TCONS_00006161-exon-sc0000063-1491911889:299417..299445TCONS_00006161-exon-sc0000063-1491911889:299417..299445Clytia hemisphaericaexon
TCONS_00006161-exon-sc0000063-1491911889:299180..299242TCONS_00006161-exon-sc0000063-1491911889:299180..299242Clytia hemisphaericaexon
TCONS_00006161-exon-sc0000063-1491911889:297408..297485TCONS_00006161-exon-sc0000063-1491911889:297408..297485Clytia hemisphaericaexon
TCONS_00006161-exon-sc0000063-1491911889:296746..296845TCONS_00006161-exon-sc0000063-1491911889:296746..296845Clytia hemisphaericaexon
TCONS_00006161-exon-sc0000063-1491911889:296199..296285TCONS_00006161-exon-sc0000063-1491911889:296199..296285Clytia hemisphaericaexon
TCONS_00006161-exon-sc0000063-1491911889:295485..295649TCONS_00006161-exon-sc0000063-1491911889:295485..295649Clytia hemisphaericaexon
TCONS_00006161-exon-sc0000063-1491911889:295192..295221TCONS_00006161-exon-sc0000063-1491911889:295192..295221Clytia hemisphaericaexon
TCONS_00006161-exon-sc0000063-1491911889:294854..294919TCONS_00006161-exon-sc0000063-1491911889:294854..294919Clytia hemisphaericaexon
TCONS_00006161-exon-sc0000063-1491911889:294590..294657TCONS_00006161-exon-sc0000063-1491911889:294590..294657Clytia hemisphaericaexon
TCONS_00006161-exon-sc0000063-1491911889:293760..293938TCONS_00006161-exon-sc0000063-1491911889:293760..293938Clytia hemisphaericaexon
TCONS_00006161-exon-sc0000063-1491911889:293006..293160TCONS_00006161-exon-sc0000063-1491911889:293006..293160Clytia hemisphaericaexon
TCONS_00006161-exon-sc0000063-1491911889:292186..292318TCONS_00006161-exon-sc0000063-1491911889:292186..292318Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000063supercontigsc0000063:292186..301415 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.31905	3.89943	1.48653	0.244004	14.2701	13.604	9.74594	11.1861	8.76583	10.136	8.78606	7.72738	7.64535	8.14138	6.47382	9.68675	8.04905	8.34531	2.81722	3.62531	4.52805	4.17796	1.94787	3.42152	6.57427	6.09453	2.58178	0.953951	2.38569	3.69566
Blast
[Close]
BLAST of TCONS_00006161 vs. Swiss-Prot (Human)
Match: SPT5H (Transcription elongation factor SPT5 OS=Homo sapiens GN=SUPT5H PE=1 SV=1)

HSP 1 Score: 444.121 bits (1141), Expect = 3.450e-145
Identity = 234/389 (60.15%), Postives = 294/389 (75.58%), Query Frame = 3 
Query:   54 EDMSRARSLHNLFGNDTSAEEIADYYKRKYADSEREYEGDYSGDYEAPAEIEQQSLLPDVKDPNLWMVRCRMGEEKQVVFMLMRKYISLSSGETPLQIKSAIAVEGLKGYIYVEAFKQSHVKQAIEGFGALRIGIWTQQMVPINEMPDVLKVVKDLVQIKAKSWVRIKRGIYKDDIAQVDYVNTARNQVTLKIIPRIDYSMMRGDMRSLSDEAEXXXXXXXXXXXLFDRDAIKNIGGDLSMDGDFYLFEYNRY-RQGFLYKTMVMSAIMSEGVKPSLSELEKFETSIDDAXXXXXXXXXXXXASHSFAAGDMVRVSEGELINLKGKVMTIDGNTILILPKHEDLKDPLEFPAHELEKYFKEGDHVKVIKGKYEGDTGLIVRVEENVIVL 1217
            ED S AR L NL+  D   EE+ +YY +KYA S    E  Y G  E   +I QQ LLP VKDPNLW V+C++GEE+     LMRK+I+    +TPLQIKS +A E +KGYIYVEA+KQ+HVKQAIEG G LR+G W QQMVPI EM DVLKVVK++  +K KSWVR+KRGIYKDDIAQVDYV  ++N ++LK+IPRIDY  ++  M SL D   KRK+ +RPPQ+LFD + I+++GGD++ DGDF +FE NRY R+GFL+K+  MSA+++EGVKP+LSELEKFE   +  +LE+  E   +E  H+F  GD V V EGELINL+GK++++DGN I I+PKHEDLKD LEFPA EL KYFK GDHVKVI G++EGDTGLIVRVEEN ++L
Sbjct:  117 EDRSGARRLQNLW-RDQREEELGEYYMKKYAKSSVG-ETVYGGSDELSDDITQQQLLPGVKDPNLWTVKCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNLRLGYWNQQMVPIKEMTDVLKVVKEVANLKPKSWVRLKRGIYKDDIAQVDYVEPSQNTISLKMIPRIDYDRIKARM-SLKDWFAKRKKFKRPPQRLFDAEKIRSLGGDVASDGDFLIFEGNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTESTGKEREHNFQPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVIL 502
The following BLAST results are available for this feature:
BLAST of TCONS_00006161 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPT5H3.450e-14560.15Transcription elongation factor SPT5 OS=Homo sapie... [more]
back to top