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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061939 ID=TCONS_00061939|Name=TCONS_00061939|organism=Clytia hemisphaerica|type=transcript|length=2710bp
CTCTTTTGATCCTTCGTAggtttatttaatttgaagtTATGatcttaagg
ctttcttaatcTTTCGCTCCTGTGGTCAATATTGCGGGATGAGAAAGTCG
TCTTTGACGTATGaaaccttcatttttttgtaatgaagagtttttaaaag
atatttgaaTATAAATGATGAATCGAGGCAAGTAAACTGTGGTGATAGTA
TGGAGAGATAATTAGTAATATTTATATTGTCTGTATATTAGCCGATGTAC
CCCCTGGTATGTCACTTTGTTTGTTTATTGTCTGTCCGTGTGTTGACATG
aaccacttttcaaactccagcggctcgtccccgtcggtcgtcaaAGTCAG
TGCCCTCCCTCCCTGGTGATGATTCCAAAATTTACCGCGATTTTGGTGTA
CAAATGGGTTTATTTCCGTTAAGGCTAGGGCAgaccgatccaacatttca
tccaacatgccttttttctgatgttggatGGAATGTCTGGACCGGTTTGt
gtcaattaaaatttttggaaaagattaaaattcaaaaaaagaaaaaaaac
gggTTGGAtggtgttggatgaagtttgatcgccatTAAACATTTCATCCA
ATATTTGTGGCGAGATCAAAGAAGCTCTCTCATTGAGTTGTGTAATTCTT
CGTGTTGGATTGGTTTTGGTGGtacttttttcattattttttgaataaag
ttATGAAATGTTTgactggtttgccctggccCTTATCGAACCAATTTCAT
GACTCCGAAGCACTGCATAGATTTTGTAAAGTAACCAAGATACTGAATTG
TAAATTCCGGCTGTAAAAAAAGTTATGTAACTTGAATAAGACACGATAAT
CCTGAACAAATCAGAATTCTTGCCATCAATCAAACCTGGAGAAGTACCTT
GCCGATCTGTTTCTCTTGTTTTGACGTAAAGAGGAATTGATTTCCTCCtt
ctttcaaaatgtgaaatagttggaaacaaaaaatcttgttttttcaCTAT
TCATTCTCTATCCTTTTTGTTTCTGGTTAGTTTTCCATTTCAAAGTGAAA
ATCAGTTAATTATCCCCACTACAATTTTTGAAATGCGATGCAATAGTCTA
CCACAGGAGTCACTTGGGTCATGCGTTTTGCATCAGAAATGAGGGGCATC
GTGAACTTATAAtcgactggacgtctatcttctattgtgtctttgaagcg
agcttcgttaccgcctgtatttcaaaattggtataaaaattgaccttttt
ctttatcagtatttcatgctctttcgaatgaaacaaacaattttcaattt
tgacgactatttattttggttgccatagtaaccaatgacgtcagtttcca
tggcaacgggaGCAagagattcctctctagccttTCCATAGGCTGTGCGC
ATCCCTAGAATAGGTTATGATATAGGAGATGCGTAtcatgtataaaattc
ccgtcccaAAATTGTTGAACACCCGTCTGTTACAGAGTTACCTTAAATTT
GGGGTAACTTGTTTCAATCTTcagaaatccaatgattgtattaacctcta
gccattcaaatttttaattaaaattgaatgaaatttgaaaatctcaaaaa
caaaaagacgCCCCCgtgacgggaattttatacacgatacgcagCCATAG
GGGCTaaaaaacatatcagaggggatgtatGTAGCCTAGCCTTCCCGACG
CATGCCCTTTTTTATCAAATCCATGTATCATTATGCTTATGTGTAGTTCG
TCTAGTAAGATATAAGACAATGGACCCAGCGGTCAAACCATCCGCAACTT
GTGTTTGAAGTTGAAGCTGAAACAGGAGGTACCAATCACGGTTTGTTCGT
TCGACCTCCAGTGATGAAGAAACCAATCATTATCCTCGGTGCTGACGTCA
CTCATTCAGCGCCCAGCGAGTCCAAGAAGCCTTCCATTGAAGCTATGGTG
GGATCGTGCAACCCCGAAGCATCGGAATATTTCTGTGAAGTTCGCGTTCA
AAAAACAAGTCAAGGTAATGGAGGAGATCGAAAAGACAGAGGAGATGATC
AAAAGTCTCCTTTAACGATTCCACGAGAAGACGCGCGTCAAACCGTTGAA
GATCATCTATTATCGAGACGGTTTCAGTGAAGGACAGTTCGTTCAAGTCA
TCTTCTTCATTGCACAGGAACGTTGCAACACACGATTGTTCCCTTCAGAC
CCAAAAGATAGTTTCGGCAAAGCGAGGAACGTACCTTCTGAAACAGTCAT
CGATCACTCATCCCACCAAACCTGACGTCTTCTTGGCATCTCATGAGGGA
CTCCAGGGTACCGCCAAACCAACGCACTACCATTTGCTTTGGGACGATAG
CAACTTCTCCAATGACGAACTTCAAAGTTTGACCTAGAACCTATGTCATC
TTTGCTCTCACTGTGAACGAAGCGTTAGTTACCCAACACCAACATATTAT
GCGCATTTGGCCACCGCCCGTGCTCGCGAACATCACAATGCTATGTTGCT
TCGCAACCGAAATCGTATTAACTTTATTCCAAAGGAGGActtgagaaaaa
tcaaaaaatgcaCTAAATCTAATAAGAAAgccaattttattttatcttaa
atttttttatcaatttcacGAGTTTGACTTTCTCAATCATAAAATATAGG
AGCAGTCTCGACCATTTTCAGTCCCCAAAATTTGCGGAGCATAATCGTTT
TGAATCGACA Run BLAST on NCBI transcript from alignment at scaffold_361:1452931..1456470+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061939 ID=TCONS_00061939|Name=TCONS_00061939|organism=Clytia hemisphaerica|type=transcript|length=3540bp|location=Sequence derived from alignment at scaffold_361:1452931..1456470+ (Clytia hemisphaerica)
CTCTTTTGATCCTTCGTAggtttatttaatttgaagtTATGatcttaagg
ctttcttaatcTTTCGCTCCTGTGGTCAATATTGCGGGATGAGAAAGTCG
TCTTTGACGTATGaaaccttcatttttttgtaatgaagagtttttaaaag
atatttgaaTATAAATGATGAATCGAGGCAAGTAAACTGTGGTGATAGTA
TGGAGAGATAATTAGTAATATTTATATTGTCTGTATATTAGCCGATGTAC
CCCCTGGTATGTCACTTTGTTTGTTTATTGTCTGTCCGTGTGTTGACATG
aaccacttttcaaactccagcggctcgtccccgtcggtcgtcaaAGTCAG
TGCCCTCCCTCCCTGGTGATGATTCCAAAATTTACCGCGATTTTGGTGTA
CAAATGGGTTTATTTCCGTTAAGGCTAGGGCAgaccgatccaacatttca
tccaacatgccttttttctgatgttggatGGAATGTCTGGACCGGTTTGt
gtcaattaaaatttttggaaaagattaaaattcaaaaaaagaaaaaaaac
gggTTGGAtggtgttggatgaagtttgatcgccatTAAACATTTCATCCA
ATATTTGTGGCGAGATCAAAGAAGCTCTCTCATTGAGTTGTGTAATTCTT
CGTGTTGGATTGGTTTTGGTGGtacttttttcattattttttgaataaag
ttATGAAATGTTTgactggtttgccctggccCTTATCGAACCAATTTCAT
GACTCCGAAGCACTGCATAGATTTTGTAAAGTAACCAAGATACTGAATTG
TAAATTCCGGCTGTAAAAAAAGTTATGTAACTTGAATAAGGTAAGTTATG
TATGTTGAACATAATAGgttcaaaagatttttcaattaaACGGTGGTGTA
TCGAAGGAGTATCACAGATAATCTTGCTTTGTAATCCAAATCACAGCTGT
ATGGTGATTTTTTATTAAGTGATGCAATCACATCTATGGTGATTTTTCAT
TAAGTGATGCAacataattatctttttaatgaTTCACTCTGAATTCTGAG
AAATGCAGACAAACTATTTTGTGTAATTAAACCATCATAGTCGATAATAG
ATTGGATCATGGAGGTATAAGAAAAATAGGAGTCTAATTTGTCGGtgatt
ggtcgttaaagtcttttgatttcttttatgaaatgtatcaaaagaaattc
taagctcgcccgttgaagtaagagttttttttagtagaactcaagtttgc
tctgaataTTTTAACTATCAGTATTGAAAAAAGCCAATAAGATTTTACCA
ATTGACTAAAGAGCTCACTAAAAATGCACGATTATGAGCATGAAAATCTC
CTTATATTTTTGGACGTAGGGTGTAGGGCGAGGATGGTTGTAAAAACATA
catctcctgtttttctttgtaCCTCCATGATTGGATGTTATTATGCTATT
CCTTCCAGAAGTCTGTAAAGGAACTTCTCAATAGATGACAGTAATTAAAT
CGCTTCTTTCAGTTTCCTTTTCGTTTGTTTTCAATGTAGACACGATAATC
CTGAACAAATCAGAATTCTTGCCATCAATCAAACCTGGAGAAGTACCTTG
CCGATCTGTTTCTCTTGTTTTGACGTAAAGAGGAATTGATTTCCTCCttc
tttcaaaatgtgaaatagttggaaacaaaaaatcttgttttttcaCTATT
CATTCTCTATCCTTTTTGTTTCTGGTTAGTTTTCCATTTCAAAGTGAAAA
TCAGTTAATTATCCCCACTACAATTTTTGAAATGCGATGCAATAGTCTAC
CACAGGAGTCACTTGGGTCATGCGTTTTGCATCAGAAATGAGGGGCATCG
TGAACTTATAAtcgactggacgtctatcttctattgtgtctttgaagcga
gcttcgttaccgcctgtatttcaaaattggtataaaaattgacctttttc
tttatcagtatttcatgctctttcgaatgaaacaaacaattttcaatttt
gacgactatttattttggttgccatagtaaccaatgacgtcagtttccat
ggcaacgggaGCAagagattcctctctagccttTCCATAGGCTGTGCGCA
TCCCTAGAATAGGTTATGATATAGGAGATGCGTAtcatgtataaaattcc
cgtcccaAAATTGTTGAACACCCGTCTGTTACAGAGTTACCTTAAATTTG
GGGTAACTTGTTTCAATCTTcagaaatccaatgattgtattaacctctag
ccattcaaatttttaattaaaattgaatgaaatttgaaaatctcaaaaac
aaaaagacgCCCCCgtgacgggaattttatacacgatacgcagCCATAGG
GGCTaaaaaacatatcagaggggatgtatGTAGCCTAGCCTTCCCGACGC
ATGCCCTTTTTTATCAAATCCATGTATCATTATGCTTATGTGTAGTTCGT
CTAGTAAGATATAAGACAATGGACCCAGCGGTCAAACCATCCGCAACTTG
TGTTTGAAGTTGAAGCTGAAACAGGAGGTACCAATCACGGTTTGTTCGTT
CGACCTCCAGTGATGAAGAAACCAATCATTATCCTCGGTGCTGACGTCAC
TCATTCAGCGCCCAGCGAGTCCAAGAAGCCTTCCATTGAAGCTATGGTGG
GATCGTGCAACCCCGAAGCATCGGAATATTTCTGTGAAGTTCGCGTTCAA
AAAACAAGTCAAGGTAATGGAGGAGATCGAAAAGACAGAGGAGATGATCA
AAAGTCTCCTTTAACGATTCCACGAGAAGACGCGCGTCAAACCGTTGAAG
ATCATCTATTATCGAGACGGTTTCAGTGAAGGACAGTTCGTTCAAGTCAT
CTTCTTCATTGCACAGGAACGTTGCAACACACGATTGTTCCCTTCAGACC
CAAAAGATAGTTTCGGCAAAGCGAGGAACGTACCTTCTGAAACAGTCATC
GATCACTCATCCCACCAAACCTGACGTCTTCTTGGCATCTCATGAGGGAC
TCCAGGTAGGACCttcattattttctttataGTTTGTTTGTAAGCATTAT
GATTGATCTCCAACCATccaaggtttttttttcatttgaaagacATTTTT
CGCAGATCGGCATTTTCTTTCTATTTGTATTTTAAGGGTACCGCCAAACC
AACGCACTACCATTTGCTTTGGGACGATAGCAACTTCTCCAATGACGAAC
TTCAAAGTTTGACCTAGAACCTATGTCATCTTTGCTCTCACTGTGAACGA
AGCGTTAGTTACCCAACACCAACATATTATGCGCATTTGGCCACCGCCCG
TGCTCGCGAACATCACAATGCTATGTTGCTTCGCAACCGAAATCGTATTA
ACTTTATTCCAAAGGAGGActtgagaaaaatcaaaaaatgcaCTAAATCT
AATAAGAAAgccaattttattttatcttaaatttttttatcaatttcacG
AGTTTGACTTTCTCAATCATAAAATATAGGAGCAGTCTCGACCATTTTCA
GTCCCCAAAATTTGCGGAGCATAATCGTTTTGAATCGACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061939-exon-scaffold_361-1491911889:1452931..1453770 | TCONS_00061939-exon-scaffold_361-1491911889:1452931..1453770 | Clytia hemisphaerica | exon |
| TCONS_00061939-exon-scaffold_361-1510915933:1452931..1453770 | TCONS_00061939-exon-scaffold_361-1510915933:1452931..1453770 | Clytia hemisphaerica | exon |
| TCONS_00061939-exon-scaffold_361-1575043694:1452931..1453770 | TCONS_00061939-exon-scaffold_361-1575043694:1452931..1453770 | Clytia hemisphaerica | exon |
| TCONS_00061939-exon-scaffold_361-1491911889:1454470..1455935 | TCONS_00061939-exon-scaffold_361-1491911889:1454470..1455935 | Clytia hemisphaerica | exon |
| TCONS_00061939-exon-scaffold_361-1510915933:1454470..1455935 | TCONS_00061939-exon-scaffold_361-1510915933:1454470..1455935 | Clytia hemisphaerica | exon |
| TCONS_00061939-exon-scaffold_361-1575043694:1454470..1455935 | TCONS_00061939-exon-scaffold_361-1575043694:1454470..1455935 | Clytia hemisphaerica | exon |
| TCONS_00061939-exon-scaffold_361-1491911889:1456067..1456470 | TCONS_00061939-exon-scaffold_361-1491911889:1456067..1456470 | Clytia hemisphaerica | exon |
| TCONS_00061939-exon-scaffold_361-1510915933:1456067..1456470 | TCONS_00061939-exon-scaffold_361-1510915933:1456067..1456470 | Clytia hemisphaerica | exon |
| TCONS_00061939-exon-scaffold_361-1575043694:1456067..1456470 | TCONS_00061939-exon-scaffold_361-1575043694:1456067..1456470 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:1452931..1456470 + |
Blast
BLAST of TCONS_00061939 vs. Swiss-Prot (Human)
Match: AGO2 (Protein argonaute-2 OS=Homo sapiens GN=AGO2 PE=1 SV=3) HSP 1 Score: 108.612 bits (270), Expect = 5.514e-49 Identity = 48/79 (60.76%), Postives = 58/79 (73.42%), Query Frame = 3
Query: 2247 SSITHPTKPDVFLASHEGLQGTAKPTHYHLLWDDSNFSNDELQSLT*NLCHLCSHCERSVSYPTPTYYAHLATARAREH 2483
+ ITHPT+ D +L SH G+QGT++P+HYH+LWDD+ FS+DELQ LT LCH C RSVS P P YYAHL RAR H
Sbjct: 738 TKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYH 816 HSP 2 Score: 63.929 bits (154), Expect = 5.514e-49 Identity = 34/91 (37.36%), Postives = 50/91 (54.95%), Query Frame = 2
Query: 2051 KSLL*RFHEKTRVKPLKIIYYRDGFSEGQFVQVI-----------------------FFIAQERCNTRLFPSDPKDSFGKARNVPSETVID 2254
+ LL +F++ TR KP +II+YRDG SEGQF QV+ F + Q+R +TRLF +D + GK+ N+P+ T +D
Sbjct: 647 RELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVD 737 HSP 3 Score: 63.1586 bits (152), Expect = 5.514e-49 Identity = 32/71 (45.07%), Postives = 44/71 (61.97%), Query Frame = 1
Query: 1798 LVFEVEAETGGTNHGLF--VRPPVMKKPIIILGADVTHSAPSESKKPSIEAMVGSCNPEASEYFCEVRVQK 2004
L ++ + GG N+ L RPPV ++P+I LGADVTH + KKPSI A+VGS + + Y VRVQ+
Sbjct: 563 LCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQ 633
The following BLAST results are available for this feature:
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