TCONS_00062118 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062118
Unique NameTCONS_00062118
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length239

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062118 ID=TCONS_00062118|Name=TCONS_00062118|organism=Clytia hemisphaerica|type=transcript|length=239bp
tgaagatataaTTACACATGTACAGTCCGGATACCACGATACGTCAATTT
TCTATTCCAGCACTTCCACTACGTAGGATATCTTACTGCAGCCTCGTCAC
TCACAAAAATTTTGTAAgccatctttgtttttgaaCGTGTTTACATTGAC
TTGTCTCGATTGCTCAAACCAAAATAAGAGTTCTTGgaaccaaaaagaaa
aagagacaaaaacACGTTCAGAGCTGGGGCtatgaagtt
Run BLAST on NCBI

transcript from alignment at scaffold_361:937748..937986

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062118 ID=TCONS_00062118|Name=TCONS_00062118|organism=Clytia hemisphaerica|type=transcript|length=239bp|location=Sequence derived from alignment at scaffold_361:937748..937986 (Clytia hemisphaerica)
aacttcataGCCCCAGCTCTGAACGTgtttttgtctctttttctttttgg
ttcCAAGAACTCTTATTTTGGTTTGAGCAATCGAGACAAGTCAATGTAAA
CACGttcaaaaacaaagatggcTTACAAAATTTTTGTGAGTGACGAGGCT
GCAGTAAGATATCCTACGTAGTGGAAGTGCTGGAATAGAAAATTGACGTA
TCGTGGTATCCGGACTGTACATGTGTAAttatatcttca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038941XLOC_038941Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062118-exon-scaffold_361-1491911889:937748..937986TCONS_00062118-exon-scaffold_361-1491911889:937748..937986Clytia hemisphaericaexon
TCONS_00062118-exon-scaffold_361-1510915933:937748..937986TCONS_00062118-exon-scaffold_361-1510915933:937748..937986Clytia hemisphaericaexon
TCONS_00062118-exon-scaffold_361-1575043694:937748..937986TCONS_00062118-exon-scaffold_361-1575043694:937748..937986Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:937748..937986 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.82808	3.56533	4.13968	6.07505	3.6979	0.974042	1.17514	4.40061	3.85121	4.77035	2.77813	2.43498	1.2158	0.631308	0.519021	2.78495	0.686165	2.10989	0	0	2.65123	3.87953	0	1.9056	2.94409	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062118 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top