TCONS_00061984 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061984
Unique NameTCONS_00061984
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1454

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061984 ID=TCONS_00061984|Name=TCONS_00061984|organism=Clytia hemisphaerica|type=transcript|length=1454bp
TGTAATAAACGACAAATCTTTTGTTTAAATAATCGCTGCTTACGAAAGAC
AGTATAAAAAGCTGTACTGACAATTTAGTCGAGTTAGTAATCAAATTACA
CGCGATAGAGAAAGGACGTAAAAGCCTTCACGCAAGCTTTCGACTGTACT
AAACAGAGCAATTTTAATATATGAATAAAGCCAAGAGATTTCGAGAAAAA
TGGTTGTTAAAATGAGGTCTAATATGAACGAGATATTCGTACAAGCTTTG
TACACGGAGGATATGCCACTACTCAGAACGATCGTTGAGGGGCTGAAATA
TGTTAGGGTGAACCATTTAAACAGTATGCTGGTCGCTAAAGCCGAGTTAG
GTGGCTTCACACCATTTGAATTCGCTTGTTTACATGGCAACGCTACATTA
GCTTCAATGTTGATCGATACTGGCAAAATAGACATTAACAGAATTGGACA
ATGTGGCTGGACACCTCTCCACGCCGCATCGTACAGCGGAGATGTGAACA
CTGTTAGAGTACTGGTTAACTCGTGCGCGGACTGTTTTGCTCGAGATGAA
AACAATAACCTACCTTTAGATTTATGCAAAGATGAGAAAACGAGGAGTCT
ACTGTTGAGTGTTATGCGACGAAAGAACttgacaaaatttaatgaaatta
taAGTGAACACGAGGAAAGGCTTTCTAAAAAACAAGGACATCAACATCAG
CAAAGAAGCAAATCGTGTTTCGCAAATGTCTCAGCCATCAAAATGAACGA
ACTTAAAACGCAGTTGATCGAACGTAAACAATCGTTATGGGAATTTAACA
CGGAAGGCAACAAAAACATTGAGAATCAACTAAGACGATGGAAAACTTGC
TCTGATTTGACCATGGAGGTTGAGAATCTTCTGGAAATGACCTGTTAAAA
AGTGCTGATGTGTTCAGAAACTAAATCCATGAGATGTTTCTTAATCAAGA
TAGCTCAATCAGCATTATTTAATATCATTAAAATTGATATCATTAAATGA
tattgtaaaaagtttttacaGAAATATTACATGTGGTCTACAAACACAGA
tgcaaagagaaaatatttgatATAAAAATCAAACAGCCCACACAGTCGGT
TGATAAGGGAATGTTTATTTAAAATATGACCTTTAGTACACACTGTCTCG
TGACTTTTCAAAATAATCCCAGTGGGGTACATTTTGACCTAGCGTATAAC
CCCTTCCTACAATACTACTAACGAATTCCAAATCGGAATGATTTTCTTTA
GGTTAGTTCACATTGTATATTATGTAAATATGGTCAAAAAATGatgtaaa
aatgtaaatttttctgaaatataTCATACCAAATTGTAAATATTAAGATA
TTATTATCAAATTTAAGGCTTAGAAATTACTTTTATACCATAAATTATCT
ATAGTTTTAATGTTAATGAAAATTTGTATTTAGTATTACTAAGGTATAAA
TAAT
Run BLAST on NCBI

protein sequence of TCONS_00061984-protein

>TCONS_00061984-protein ID=TCONS_00061984-protein|Name=TCONS_00061984-protein|organism=Clytia hemisphaerica|type=polypeptide|length=232bp
MVVKMRSNMNEIFVQALYTEDMPLLRTIVEGLKYVRVNHLNSMLVAKAEL
GGFTPFEFACLHGNATLASMLIDTGKIDINRIGQCGWTPLHAASYSGDVN
TVRVLVNSCADCFARDENNNLPLDLCKDEKTRSLLLSVMRRKNLTKFNEI
ISEHEERLSKKQGHQHQQRSKSCFANVSAIKMNELKTQLIERKQSLWEFN
TEGNKNIENQLRRWKTCSDLTMEVENLLEMTC
Run BLAST on NCBI

transcript from alignment at scaffold_361:359711..361218-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061984 ID=TCONS_00061984|Name=TCONS_00061984|organism=Clytia hemisphaerica|type=transcript|length=1508bp|location=Sequence derived from alignment at scaffold_361:359711..361218- (Clytia hemisphaerica)
TGTAATAAACGACAAATCTTTTGTTTAAATAATCGCTGCTTACGAAAGAC
AGTATAAAAAGCTGTACTGACAATTTAGTCGAGTTAGTAATCAAATTACA
CGCGATAGAGAAAGGACGTAAAAGCCTTCACGCAAGCTTTCGACTGTACT
AAACAGAGCAATTTTAATATATGAATAAAGCCAAGAGATTTCGAGAAAAA
TGGTTGTTAAAATGAGGTCTAATATGAACGAGATATTCGTACAAGCTTTG
TACACGGAGGATATGCCACTACTCAGAACGATCGTTGAGGGGCTGAAATA
TGTTAGGGTGAACCATTTAAACAGTATGCTGGTCGCTAAAGCCGAGTTAG
GTGGCTTCACACCATTTGAATTCGCTTGTTTACATGGCAACGCTACATTA
GCTTCAATGTTGATCGATACTGGCAAAATAGACATTAACAGAATTGGACA
ATGTGGCTGGACACCTCTCCACGCCGCATCGTACAGCGGAGATGTGAACA
CTGTTAGAGTACTGGTTAACTCGTGCGCGGACTGTTTTGCTCGAGATGAA
AACAATAACCTACCTTTAGATTTATGCAAAGATGAGAAAACGAGGAGTCT
ACTGTTGAGTGTTATGCGACGAAAGAACTTGACAAAATTTAATGAAATTA
TAAGTGAACACGAGGAAAGGCTTTCTAAAAAACAAGGACATCAACATCAG
CAAAGAAGCAAATCGTGTTTCGCAAATGTCTCAGCCATCAAAATGAACGA
ACTTAAAACGCAGTTGATCGAACGTAAACAATCGTTATGGGAATTTAACA
CGGAAGGCAACAAAAACATTGAGAATCAACTAAGACGATGGAAAACTTGC
TCTGATTTGACCATGGAGGTTGAGAATCTTCTGGAAATGACCTGTTAAAA
AGTGCTGATGTGTTCAGAAACTAAATCCATGAGATGTTTCTTAATCAAGA
TAGCTCAATCAGCATTATTTAATATCATTAAAATTGATATCATTAAATGA
TATTGTAAAAAGTTTTTACAGAAATATTACATGTGGTCTACAAACACAGA
TGCAAAGAGAAAATATTTGATATAAAAATCAAACAGCCCACACAGTCGGT
TGATAAGGGAATGTTTATTTAAAATATGACCTTTAGTACACACTGTCTCG
TGACTTTTCAAAATAATCCCAGTGGGGTACATTTTGACCTAGCGTATAAC
CCCTTCCTACAATACTACTAACGAATTCCAAATCGGAATGATTTTCTTTA
GGTTAGTTCACATTGTATATTATGTAAATATGGTCAAAAAATGATGTAAA
AATGTAAATTTTTCTGAAATATATCATACCAAATTGTAAATATTAAGATA
TTATTATCAAATTTAAGGCTTAGAAATTNCGAATTGTAAATATTAACAAA
GATATTATTATTAAATTTAAGGCTTAGAAATTACTTTTATACCATAAATT
ATCTATAGTTTTAATGTTAATGAAAATTTGTATTTAGTATTACTAAGGTA
TAAATAAT

Coding sequence (CDS) from alignment at scaffold_361:359711..361218-

>TCONS_00061984 ID=TCONS_00061984|Name=TCONS_00061984|organism=Clytia hemisphaerica|type=CDS|length=699bp|location=Sequence derived from alignment at scaffold_361:359711..361218- (Clytia hemisphaerica)
ATGGTTGTTAAAATGAGGTCTAATATGAACGAGATATTCGTACAAGCTTT
GTACACGGAGGATATGCCACTACTCAGAACGATCGTTGAGGGGCTGAAAT
ATGTTAGGGTGAACCATTTAAACAGTATGCTGGTCGCTAAAGCCGAGTTA
GGTGGCTTCACACCATTTGAATTCGCTTGTTTACATGGCAACGCTACATT
AGCTTCAATGTTGATCGATACTGGCAAAATAGACATTAACAGAATTGGAC
AATGTGGCTGGACACCTCTCCACGCCGCATCGTACAGCGGAGATGTGAAC
ACTGTTAGAGTACTGGTTAACTCGTGCGCGGACTGTTTTGCTCGAGATGA
AAACAATAACCTACCTTTAGATTTATGCAAAGATGAGAAAACGAGGAGTC
TACTGTTGAGTGTTATGCGACGAAAGAACTTGACAAAATTTAATGAAATT
ATAAGTGAACACGAGGAAAGGCTTTCTAAAAAACAAGGACATCAACATCA
GCAAAGAAGCAAATCGTGTTTCGCAAATGTCTCAGCCATCAAAATGAACG
AACTTAAAACGCAGTTGATCGAACGTAAACAATCGTTATGGGAATTTAAC
ACGGAAGGCAACAAAAACATTGAGAATCAACTAAGACGATGGAAAACTTG
CTCTGATTTGACCATGGAGGTTGAGAATCTTCTGGAAATGACCTGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038854XLOC_038854Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061984-proteinTCONS_00061984-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061984-exon-scaffold_361-1575043694:359852..361218TCONS_00061984-exon-scaffold_361-1575043694:359852..361218Clytia hemisphaericaexon
TCONS_00061984-exon-scaffold_361-1575043694:359711..359797TCONS_00061984-exon-scaffold_361-1575043694:359711..359797Clytia hemisphaericaexon
TCONS_00061984-exon-scaffold_361-1510915933:359852..361218TCONS_00061984-exon-scaffold_361-1510915933:359852..361218Clytia hemisphaericaexon
TCONS_00061984-exon-scaffold_361-1510915933:359711..359797TCONS_00061984-exon-scaffold_361-1510915933:359711..359797Clytia hemisphaericaexon
TCONS_00061984-exon-scaffold_361-1491911889:359852..361218TCONS_00061984-exon-scaffold_361-1491911889:359852..361218Clytia hemisphaericaexon
TCONS_00061984-exon-scaffold_361-1491911889:359711..359797TCONS_00061984-exon-scaffold_361-1491911889:359711..359797Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:359711..361218 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.230572	0.0303669	0.805999	1.13185	1.17665	1.75491	2.39625	1.32848	17.5495	11.0021	2.66988	3.75079	10.204	14.0327	35.2903	37.5944	11.4064	12.619	4.57424	6.20827	7.4958	13.5981	4.61072	4.21177	1.01211	0.676714
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061984 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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